Jennifer B. Martiny - Publications

Biological Sciences - Ph.D. University of California, Irvine, Irvine, CA 
General Biology, Ecology Biology, Microbiology Biology

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chase AB, Weihe C, Martiny JBH. Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33906949 DOI: 10.1073/pnas.2101254118  0.01
2021 Oliver A, Chase AB, Weihe C, Orchanian SB, Riedel SF, Hendrickson CL, Lay M, Sewall JM, Martiny JBH, Whiteson K. High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids. Msystems. 6. PMID 33727392 DOI: 10.1128/mSystems.00115-21  0.01
2020 Walters KE, Martiny JBH. Alpha-, beta-, and gamma-diversity of bacteria varies across habitats. Plos One. 15: e0233872. PMID 32966309 DOI: 10.1371/journal.pone.0233872  1
2020 Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. Mbio. 11. PMID 32843557 DOI: 10.1128/Mbio.01851-20  1
2020 Malik AA, Swenson T, Weihe C, Morrison EW, Martiny JBH, Brodie EL, Northen TR, Allison SD. Drought and plant litter chemistry alter microbial gene expression and metabolite production. The Isme Journal. PMID 32444813 DOI: 10.1038/S41396-020-0683-6  1
2020 Sewall JM, Oliver A, Denaro K, Chase AB, Weihe C, Lay M, Martiny JBH, Whiteson K. Fiber Force: A Fiber Diet Intervention in an Advanced Course-Based Undergraduate Research Experience (CURE) Course. Journal of Microbiology & Biology Education. 21. PMID 32431776 DOI: 10.1128/Jmbe.V21I1.1991  1
2020 Prosser JI, Martiny JBH. Conceptual challenges in microbial community ecology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190241. PMID 32200750 DOI: 10.1098/rstb.2019.0241  0.12
2020 Isobe K, Bouskill NJ, Brodie EL, Sudderth EA, Martiny JBH. Phylogenetic conservation of soil bacterial responses to simulated global changes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190242. PMID 32200749 DOI: 10.1098/rstb.2019.0242  1
2020 Rodriguez CI, Martiny JBH. Evolutionary relationships among bifidobacteria and their hosts and environments. Bmc Genomics. 21: 26. PMID 31914919 DOI: 10.1186/s12864-019-6435-1  0.2
2020 Martiny JBH, Whiteson KL, Bohannan BJM, David LA, Hynson NA, McFall-Ngai M, Rawls JF, Schmidt TM, Abdo Z, Blaser MJ, Bordenstein S, Bréchot C, Bull CT, Dorrestein P, Eisen JA, et al. The emergence of microbiome centres. Nature Microbiology. 5: 2-3. PMID 31857734 DOI: 10.1038/S41564-019-0644-X  1
2019 Chase AB, Arevalo P, Brodie EL, Polz MF, Karaoz U, Martiny JBH. Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria. Mbio. 10. PMID 31662456 DOI: 10.1128/Mbio.02361-19  0.01
2019 Chase AB, Arevalo P, Brodie EL, Polz MF, Karaoz U, Martiny JBH. Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria. Mbio. 10. PMID 31662456 DOI: 10.1128/mBio.02361-19  1
2019 Khalili B, Weihe C, Kimball S, Schmidt KT, Martiny JBH. Optimization of a Method To Quantify Soil Bacterial Abundance by Flow Cytometry. Msphere. 4. PMID 31597718 DOI: 10.1128/mSphere.00435-19  1
2019 Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. The Isme Journal. PMID 31554911 DOI: 10.1038/S41396-019-0510-0  1
2019 Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, ... ... Martiny JBH, et al. Scientists' warning to humanity: microorganisms and climate change. Nature Reviews. Microbiology. PMID 31213707 DOI: 10.1038/S41579-019-0222-5  1
2019 Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH. Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nature Communications. 10: 2499. PMID 31175309 DOI: 10.1038/S41467-019-10390-Y  1
2019 Albright MBN, Chase AB, Martiny JBH. Experimental Evidence that Stochasticity Contributes to Bacterial Composition and Functioning in a Decomposer Community. Mbio. 10. PMID 30992354 DOI: 10.1128/Mbio.00568-19  1
2018 Wandro S, Oliver A, Gallagher T, Weihe C, England W, Martiny JBH, Whiteson K. Predictable Molecular Adaptation of Coevolving and Lytic Phage EfV12-phi1. Frontiers in Microbiology. 9: 3192. PMID 30766528 DOI: 10.3389/Fmicb.2018.03192  1
2018 Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH. Decomposition responses to climate depend on microbial community composition. Proceedings of the National Academy of Sciences of the United States of America. PMID 30397146 DOI: 10.1073/Pnas.1811269115  1
2018 Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH. Emergence of Soil Bacterial Ecotypes Along a Climate Gradient. Environmental Microbiology. PMID 30209883 DOI: 10.1111/1462-2920.14405  1
2018 Albright MBN, Timalsina B, Martiny JBH, Dunbar J. Comparative Genomics of Nitrogen Cycling Pathways in Bacteria and Archaea. Microbial Ecology. PMID 30105504 DOI: 10.1007/s00248-018-1239-4  1
2018 Glassman SI, Martiny JBH. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units. Msphere. 3. PMID 30021874 DOI: 10.1128/mSphere.00148-18  1
2018 Baker NR, Khalili B, Martiny JBH, Allison SD. Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology. PMID 29663355 DOI: 10.1002/Ecy.2345  1
2018 Martiny JBH, Walters KE. Towards a Natural History of Soil Bacterial Communities. Trends in Microbiology. PMID 29523393 DOI: 10.1016/J.Tim.2018.02.010  1
2018 Elalaoui K, Weihe C, Oliver A, Craver B, Lai HY, Brooks S, Kim D, Martiny J, Whiteson K, Fleischman A. Investigating the Role of the Gut Microbiome in the Inflammatory State of Myeloproliferative Neoplasms Blood. 132: 3051-3051. DOI: 10.1182/Blood-2018-99-109761  1
2018 Chase AB, Martiny JB. The importance of resolving biogeographic patterns of microbial microdiversity Microbiology Australia. 39: 5. DOI: 10.1071/Ma18003  0.01
2017 Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny JBH. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. Mbio. 8. PMID 29138307 DOI: 10.1128/Mbio.01809-17  1
2017 Albright MBN, Martiny JBH. Dispersal alters bacterial diversity and composition in a natural community. The Isme Journal. PMID 29053150 DOI: 10.1038/ismej.2017.161  1
2017 Dolan KL, Peña J, Allison SD, Martiny JB. Phylogenetic conservation of substrate use specialization in leaf litter bacteria. Plos One. 12: e0174472. PMID 28358894 DOI: 10.1371/Journal.Pone.0174472  1
2017 Balshor BJ, Garrambone MS, Austin P, Balazs KR, Weihe C, Martiny JB, Huxman TE, McCollum JR, Kimball S. The effect of soil inoculants on seed germination of native and invasive species Botany. 95: 469-480. DOI: 10.1139/Cjb-2016-0248  0.01
2016 Chase AB, Arevalo P, Polz MF, Berlemont R, Martiny JB. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. Frontiers in Microbiology. 7: 1874. PMID 27920771 DOI: 10.3389/Fmicb.2016.01874  1
2016 Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. The Isme Journal. PMID 27740610 DOI: 10.1038/Ismej.2016.122  1
2016 Marston MF, Martiny JB. Genomic diversification of marine cyanophages into stable ecotypes. Environmental Microbiology. PMID 27696643 DOI: 10.1111/1462-2920.13556  1
2016 Crummett LT, Puxty RJ, Weihe C, Marston MF, Martiny JB. The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 499: 219-229. PMID 27693926 DOI: 10.1016/j.virol.2016.09.016  1
2016 Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, et al. The Microbial Olympics 2016. Nature Microbiology. 1: 16122. PMID 27573121 DOI: 10.1038/Nmicrobiol.2016.122  1
2016 Evans S, Martiny JB, Allison SD. Effects of dispersal and selection on stochastic assembly in microbial communities. The Isme Journal. PMID 27494293 DOI: 10.1038/Ismej.2016.96  1
2016 Hanson CA, Marston MF, Martiny JB. Biogeographic Variation in Host Range Phenotypes and Taxonomic Composition of Marine Cyanophage Isolates. Frontiers in Microbiology. 7: 983. PMID 27446023 DOI: 10.3389/Fmicb.2016.00983  1
2016 Nelson MB, Martiny AC, Martiny JB. Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432978 DOI: 10.1073/Pnas.1601070113  1
2016 Martiny JB. History Leaves Its Mark on Soil Bacterial Diversity. Mbio. 7. PMID 27273826 DOI: 10.1128/mBio.00784-16  0.01
2016 Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. The Isme Journal. 10: 109-18. PMID 26046258 DOI: 10.1038/Ismej.2015.96  1
2015 Martiny JB, Jones SE, Lennon JT, Martiny AC. Microbiomes in light of traits: A phylogenetic perspective. Science (New York, N.Y.). 350: aac9323. PMID 26542581 DOI: 10.1126/Science.Aac9323  1
2015 Matulich KL, Martiny JB. Microbial composition alters the response of litter decomposition to environmental change. Ecology. 96: 154-63. PMID 26236900  1
2015 Nelson MB, Berlemont R, Martiny AC, Martiny JB. Nitrogen Cycling Potential of a Grassland Litter Microbial Community. Applied and Environmental Microbiology. 81: 7012-22. PMID 26231641 DOI: 10.1128/Aem.02222-15  1
2015 Vivanco L, Irvine IC, Martiny JB. Nonlinear responses in salt marsh functioning to increased nitrogen addition. Ecology. 96: 936-47. PMID 26230015 DOI: 10.1890/13-1983.1  1
2015 Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. The Isme Journal. 9: 2477-89. PMID 25978544 DOI: 10.1038/Ismej.2015.58  1
2015 Amend AS, Matulich KL, Martiny JB. Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities. Frontiers in Microbiology. 6: 109. PMID 25741330 DOI: 10.3389/Fmicb.2015.00109  1
2015 Martiny JBH. Dispersal and the Microbiome Microbe Magazine. 10: 191-196. DOI: 10.1128/MICROBE.10.191.1  0.01
2014 Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Frontiers in Microbiology. 5: 639. PMID 25505459 DOI: 10.3389/Fmicb.2014.00639  1
2014 Sjöstedt J, Martiny JB, Munk P, Riemann L. Abundance of broad bacterial taxa in the sargasso sea explained by environmental conditions but not water mass. Applied and Environmental Microbiology. 80: 2786-95. PMID 24561593 DOI: 10.1128/AEM.00099-14  1
2014 Martiny JB, Riemann L, Marston MF, Middelboe M. Antagonistic coevolution of marine planktonic viruses and their hosts. Annual Review of Marine Science. 6: 393-414. PMID 23987913 DOI: 10.1146/annurev-marine-010213-135108  1
2013 Hatosy SM, Martiny JB, Sachdeva R, Steele J, Fuhrman JA, Martiny AC. Beta diversity of marine bacteria depends on temporal scale. Ecology. 94: 1898-904. PMID 24279260 DOI: 10.1890/12-2125.1  1
2013 Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie EL. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Frontiers in Microbiology. 4: 282. PMID 24069019 DOI: 10.3389/Fmicb.2013.00282  1
2013 Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 94: 714-25. PMID 23687897 DOI: 10.1890/12-1243.1  1
2013 Marston MF, Taylor S, Sme N, Parsons RJ, Noyes TJ, Martiny JB. Marine cyanophages exhibit local and regional biogeography. Environmental Microbiology. 15: 1452-63. PMID 23279166 DOI: 10.1111/1462-2920.12062  1
2013 Reed HE, Martiny JB. Microbial composition affects the functioning of estuarine sediments. The Isme Journal. 7: 868-79. PMID 23235294 DOI: 10.1038/ismej.2012.154  1
2013 Irvine IC, Witter MS, Brigham CA, Martiny JBH. Relationships between Methylobacteria and Glyphosate with Native and Invasive Plant Species: Implications for Restoration Restoration Ecology. 21: 105-113. DOI: 10.1111/J.1526-100X.2011.00850.X  1
2012 Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. Fundamentals of microbial community resistance and resilience. Frontiers in Microbiology. 3: 417. PMID 23267351 DOI: 10.3389/Fmicb.2012.00417  1
2012 Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny JB. Beyond biogeographic patterns: processes shaping the microbial landscape. Nature Reviews. Microbiology. 10: 497-506. PMID 22580365 DOI: 10.1038/Nrmicro2795  1
2012 Irvine IC, Vivanco L, Bentley PN, Martiny JB. The effect of nitrogen enrichment on c(1)-cycling microorganisms and methane flux in salt marsh sediments. Frontiers in Microbiology. 3: 90. PMID 22470369 DOI: 10.3389/Fmicb.2012.00090  1
2012 Kuznetsov YG, Chang SC, Credaroli A, Martiny J, McPherson A. An atomic force microscopy investigation of cyanophage structure. Micron (Oxford, England : 1993). 43: 1336-42. PMID 22424715 DOI: 10.1016/J.Micron.2012.02.013  1
2012 Marston MF, Pierciey FJ, Shepard A, Gearin G, Qi J, Yandava C, Schuster SC, Henn MR, Martiny JB. Rapid diversification of coevolving marine Synechococcus and a virus. Proceedings of the National Academy of Sciences of the United States of America. 109: 4544-9. PMID 22388749 DOI: 10.1073/Pnas.1120310109  1
2012 Irvine IC, Brigham CA, Suding KN, Martiny JB. The abundance of pink-pigmented facultative methylotrophs in the root zone of plant species in invaded coastal sage scrub habitat. Plos One. 7: e31026. PMID 22383990 DOI: 10.1371/Journal.Pone.0031026  1
2012 Martiny JBH. book review: A case for microbial endemism Frontiers of Biogeography. 3. DOI: 10.21425/f5fbg12445  0.01
2011 Martiny AC, Martiny JB, Weihe C, Field A, Ellis JC. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Frontiers in Microbiology. 2: 238. PMID 22347872 DOI: 10.3389/Fmicb.2011.00238  1
2011 Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny JB, Sogin M, Boetius A, Ramette A. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. Plos One. 6: e24570. PMID 21931760 DOI: 10.1371/Journal.Pone.0024570  1
2011 Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences of the United States of America. 108: 7850-4. PMID 21518859 DOI: 10.1073/Pnas.1016308108  1
2011 Mohamed DJ, Martiny JB. Patterns of fungal diversity and composition along a salinity gradient. The Isme Journal. 5: 379-88. PMID 20882058 DOI: 10.1038/ismej.2010.137  1
2010 Kuznetsov YG, Martiny JB, McPherson A. Structural analysis of a Synechococcus myovirus S-CAM4 and infected cells by atomic force microscopy. The Journal of General Virology. 91: 3095-104. PMID 20739271 DOI: 10.1099/Vir.0.025254-0  1
2010 Lage MD, Reed HE, Weihe C, Crain CM, Martiny JB. Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments. The Isme Journal. 4: 933-44. PMID 20220792 DOI: 10.1038/Ismej.2010.10  1
2008 Allison SD, Martiny JB. Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 105: 11512-9. PMID 18695234 DOI: 10.1073/Pnas.0801925105  1
2008 Lennon JT, Martiny JB. Rapid evolution buffers ecosystem impacts of viruses in a microbial food web. Ecology Letters. 11: 1178-88. PMID 18647331 DOI: 10.1111/j.1461-0248.2008.01225.x  1
2008 Shaw AK, Halpern AL, Beeson K, Tran B, Venter JC, Martiny JB. It's all relative: ranking the diversity of aquatic bacterial communities. Environmental Microbiology. 10: 2200-10. PMID 18637951 DOI: 10.1111/J.1462-2920.2008.01626.X  1
2008 Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, ... ... Martiny J, et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology. 26: 541-7. PMID 18464787 DOI: 10.1038/Nbt1360  1
2008 Bradley DJ, Gilbert GS, Martiny JB. Pathogens promote plant diversity through a compensatory response. Ecology Letters. 11: 461-9. PMID 18312409 DOI: 10.1111/J.1461-0248.2008.01162.X  1
2007 Lennon JT, Khatana SA, Marston MF, Martiny JB. Is there a cost of virus resistance in marine cyanobacteria? The Isme Journal. 1: 300-12. PMID 18043641 DOI: 10.1038/ismej.2007.37  1
2007 Reed HE, Martiny JB. Testing the functional significance of microbial composition in natural communities. Fems Microbiology Ecology. 62: 161-70. PMID 17937673 DOI: 10.1111/j.1574-6941.2007.00386.x  1
2007 Stoddard LI, Martiny JB, Marston MF. Selection and characterization of cyanophage resistance in marine Synechococcus strains. Applied and Environmental Microbiology. 73: 5516-22. PMID 17630310 DOI: 10.1128/AEM.00356-07  1
2007 Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJ, Colwell RK, Fuhrman JA, Green JL, Kuske CR, Martiny JB, Muyzer G, OvreÃ¥s L, Reysenbach AL, Smith VH. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology. 88: 1345-53. PMID 17601127 DOI: 10.1890/06-0286  1
2006 Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, et al. Microbial biogeography: putting microorganisms on the map. Nature Reviews. Microbiology. 4: 102-12. PMID 16415926 DOI: 10.1038/Nrmicro1341  1
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