Joseph W. Spatafora - Related publications

Oregon State University, Corvallis, OR 
Systematic Biology, Molecular Biology, Evolution and Development Biology, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Achatz TJ, Martens JR, Kostadinova A, Pulis EE, Orlofske SA, Bell JA, Fecchio A, Oyarzún-Ruiz P, Syrota YY, Tkach VV. Molecular phylogeny of Diplostomum, Tylodelphys, Austrodiplostomum and Paralaria (Digenea: Diplostomidae) necessitates systematic changes and reveals a history of evolutionary host switching events. International Journal For Parasitology. PMID 34371018 DOI: 10.1016/j.ijpara.2021.06.002   
2021 Tian X, Guo J, Zhou X, Ma K, Ma Y, Shi T, Shi Y. Comparative and Evolutionary Analyses on the Complete Plastomes of Five Horticultural Plants. Frontiers in Plant Science. 12: 705874. PMID 34512691 DOI: 10.3389/fpls.2021.705874   
2021 Tao Y, Chen B, Kang M, Liu Y, Wang J. Genome-Wide Evidence for Complex Hybridization and Demographic History in a Group of From China. Frontiers in Genetics. 12: 717200. PMID 34527022 DOI: 10.3389/fgene.2021.717200   
2021 Carnovale CS, Fernández GP, Merino ML, Mora MS. Redefining the Distributional Boundaries and Phylogenetic Relationships for Ctenomids From Central Argentina. Frontiers in Genetics. 12: 698134. PMID 34422000 DOI: 10.3389/fgene.2021.698134   
2021 Gippner S, Travers SL, Scherz MD, Colston TJ, Lyra ML, Mohan AV, Multzsch M, Nielsen SV, Rancilhac L, Glaw F, Bauer AM, Vences M. A comprehensive phylogeny of dwarf geckos of the genus Lygodactylus, with insights into their systematics and morphological variation. Molecular Phylogenetics and Evolution. 107311. PMID 34530117 DOI: 10.1016/j.ympev.2021.107311   
2021 Kim H, Yang JH, Bustamante DE, Calderon MS, Mansilla A, Maggs CA, Hansen GI, Yoon HS. Organelle Genome Variation in the Red Algal Genus (Florideophyceae). Frontiers in Genetics. 12: 724734. PMID 34646303 DOI: 10.3389/fgene.2021.724734   
2021 Chen S, Yan H, Sha L, Chen N, Zhang H, Zhou Y, Fan X. Chloroplast Phylogenomic Analyses Resolve Multiple Origins of the Species (Poaceae: Triticeae) Independent Polyploidization Events. Frontiers in Plant Science. 12: 682040. PMID 34421940 DOI: 10.3389/fpls.2021.682040   
2021 Cosic A, Leitner E, Petternel C, Galler H, Reinthaler FF, Herzog-Obereder KA, Tatscher E, Raffl S, Feierl G, Högenauer C, Zechner EL, Kienesberger S. Variation in Accessory Genes Within the Species Complex Delineates Monophyletic Members and Simplifies Coherent Genotyping. Frontiers in Microbiology. 12: 692453. PMID 34276625 DOI: 10.3389/fmicb.2021.692453   
2021 Fan LF, Alvarenga RLM, Gibertoni TB, Wu F, Dai YC. Four new species in the complex (Tremellales, Basidiomycota). Mycokeys. 82: 33-56. PMID 34393591 DOI: 10.3897/mycokeys.82.63241   
2021 Cunha TJ, Reimer JD, Giribet G. Investigating Sources of Conflict in Deep Phylogenomics of Vetigastropod Snails. Systematic Biology. PMID 34469579 DOI: 10.1093/sysbio/syab071   
2021 Guan JY, Shen SQ, Zhang ZY, Xu XD, Storey KB, Yu DN, Zhang JY. Comparative Mitogenomes of Two Species (Microcoryphia: Machilidae) along with Phylogenetic Analyses of Microcoryphia. Insects. 12. PMID 34564235 DOI: 10.3390/insects12090795   
2021 Li R, Zhuang W, Wang C, El-Serehy H, Al-Farraj SA, Warren A, Hu X. Redescription and SSU rRNA gene-based phylogeny of an anaerobic ciliate, Kahl, 1931 (Ciliophora, Plagiopylea). International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34427553 DOI: 10.1099/ijsem.0.004936   
2021 Harvey VL, Keating JN, Buckley M. Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences. Royal Society Open Science. 8: 201955. PMID 34430038 DOI: 10.1098/rsos.201955   
2021 Hopley T, Webber BL, Raghu S, Morin L, Byrne M. Revealing the Introduction History and Phylogenetic Relationships of in Australia. Frontiers in Plant Science. 12: 651805. PMID 34394135 DOI: 10.3389/fpls.2021.651805   
2021 Galindo LJ, López-García P, Torruella G, Karpov S, Moreira D. Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. Nature Communications. 12: 4973. PMID 34404788 DOI: 10.1038/s41467-021-25308-w   
2021 Johnson KP, Weckstein JD, Virrueta Herrera S, Doña J. The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus. Molecular Phylogenetics and Evolution. 107297. PMID 34438049 DOI: 10.1016/j.ympev.2021.107297   
2021 Song W, Xu D, Chen X, Warren A, Shin MK, Song W, Li L. Overview of the Diversity, Phylogeny and Biogeography of Strombidiid Oligotrich Ciliates (Protista, Ciliophora), With a Brief Revision and a Key to the Known Genera. Frontiers in Microbiology. 12: 700940. PMID 34603227 DOI: 10.3389/fmicb.2021.700940   
2021 Atta CJ, Yuan H, Li C, Arcila D, Betancur-R R, Hughes LC, Ortí G, Tornabene L. Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei). Molecular Phylogenetics and Evolution. 166: 107315. PMID 34537325 DOI: 10.1016/j.ympev.2021.107315   
2021 Zhang Y, Qiao D, Shi W, Wu D, Cai M. sp. nov., isolated from subgingival plaque of periodontitis patient. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34431768 DOI: 10.1099/ijsem.0.004979   
2021 Wang Y, Cao Z, Ogilvie HA, Nakhleh L. Phylogenomic assessment of the role of hybridization and introgression in trait evolution. Plos Genetics. 17: e1009701. PMID 34407067 DOI: 10.1371/journal.pgen.1009701   
2021 Bentlage B, Collins AG. Tackling the phylogenetic conundrum of Hydroidolina (Cnidaria: Medusozoa: Hydrozoa) by assessing competing tree topologies with targeted high-throughput sequencing. Peerj. 9: e12104. PMID 34589302 DOI: 10.7717/peerj.12104   
2021 Trollip C, Carnegie AJ, Dinh Q, Kaur J, Smith D, Mann R, Rodoni B, Edwards J. Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov. Ima Fungus. 12: 24. PMID 34465398 DOI: 10.1186/s43008-021-00076-w   
2021 Qian H, Jin Y. Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages? Plant Diversity. 43: 255-263. PMID 34485767 DOI: 10.1016/j.pld.2020.11.005   
2021 Cannon CH. Is speciation an inexorable march to reproductive isolation? Molecular Ecology. PMID 34407243 DOI: 10.1111/mec.16129   
2021 Zhong S, Zhao L, Huang G, Liu Y, Huang L. The first complete mitochondrial genome of (Mitsukuri & Ohshima in Ohshima, 1912) (Dendrochirotida: Phyllophoridae). Mitochondrial Dna. Part B, Resources. 6: 2979-2980. PMID 34553066 DOI: 10.1080/23802359.2021.1976687   
2021 Rasplus JY, Rodriguez LJ, Sauné L, Peng YQ, Bain A, Kjellberg F, Harrison RD, Pereira RAS, Ubaidillah R, Tollon-Cordet C, Gautier M, Rossi JP, Cruaud A. Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae). Cladistics : the International Journal of the Willi Hennig Society. 37: 402-422. PMID 34478193 DOI: 10.1111/cla.12443   
2021 M Lyra G, Iha C, Grassa CJ, Cai L, Zhang H, Lane C, Blouin N, Oliveira MC, Marcos de Castro Nunes J, Davis CC. Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta). Molecular Phylogenetics and Evolution. 107294. PMID 34419587 DOI: 10.1016/j.ympev.2021.107294   
2021 He K, Chen X, Qiu YB, Liu Z, Wang WZ, Woodman N, Maldonado JE, Pan X. Mitogenome and phylogenetic analyses support rapid diversification among species groups of small-eared shrews genus (Mammalia: Eulipotyphla: Soricidae). Zoological Research. 42: 739-745. PMID 34636193 DOI: 10.24272/j.issn.2095-8137.2021.199   
2021 Crous PW, Lombard L, Sandoval-Denis M, Seifert KA, Schroers HJ, Chaverri P, Gené J, Guarro J, Hirooka Y, Bensch K, Kema GHJ, Lamprecht SC, Cai L, Rossman AY, Stadler M, et al. : more than a node or a foot-shaped basal cell. Studies in Mycology. 98: 100116. PMID 34466168 DOI: 10.1016/j.simyco.2021.100116   
2021 Zeng ZF, Rao R, Yu QG, Yue LL. The complete chloroplast genome of (Ranunculaceae). Mitochondrial Dna. Part B, Resources. 6: 2955-2956. PMID 34553056 DOI: 10.1080/23802359.2021.1972873   
2021 Gowri Shankar P, Swamy P, Williams RC, Ganesh SR, Moss M, Höglund J, Das I, Sahoo G, Vijayakumar SP, Shanker K, Wüster W, Dutta SK. King or royal family? Testing for species boundaries in the King Cobra, Ophiophagus hannah (Cantor, 1836), using morphology and multilocus DNA analyses. Molecular Phylogenetics and Evolution. 107300. PMID 34474153 DOI: 10.1016/j.ympev.2021.107300   
2021 Yardeni G, Viruel J, Paris M, Hess J, Groot Crego C, de La Harpe M, Rivera N, Barfuss MHJ, Till W, Guzmán-Jacob V, Krömer T, Lexer C, Paun O, Leroy T. Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations. Molecular Ecology Resources. PMID 34606683 DOI: 10.1111/1755-0998.13523   
2021 Nel WJ, de Beer ZW, Wingfield MJ, Poulsen M, Aanen DK, Wingfield BD, Duong TA. Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia. 1-19. PMID 34477494 DOI: 10.1080/00275514.2021.1950455   
2021 Silvério R Mauad AV, Vieira LDN, Antônio de Baura V, Balsanelli E, Maltempi de Souza E, Chase MW, de Camargo Smidt E. Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data. Plos One. 16: e0256126. PMID 34449781 DOI: 10.1371/journal.pone.0256126   
2021 Wang C, Jiang L, Qu Z, Al-Farraj SA, Warren A, Hu X. Taxonomy and Phylogeny of Three Species of Dysteria (Ciliophora, Phyllopharyngea) Including the Description of Dysteria ozakii nom. nov. Protist. 172: 125831. PMID 34592569 DOI: 10.1016/j.protis.2021.125831   
2021 Habib N, Rao MPN, Xiao M, Jan SA, Li WJ. Genome-based reclassification of and as later heterotypic synonyms of . International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34424833 DOI: 10.1099/ijsem.0.004927   
2021 Tihelka E, Cai C, Giacomelli M, Lozano-Fernandez J, Rota-Stabelli O, Huang D, Engel MS, Donoghue PCJ, Pisani D. The evolution of insect biodiversity. Current Biology : Cb. 31: R1299-R1311. PMID 34637741 DOI: 10.1016/j.cub.2021.08.057   
2021 Hauerová R, Hauer T, Kaštovský J, Komárek J, Lepšová-Skácelová O, Mareš J. Tenebriella gen. nov. - the dark twin of Oscillatoria. Molecular Phylogenetics and Evolution. 107293. PMID 34391914 DOI: 10.1016/j.ympev.2021.107293   
2021 Vilaça ST, Piccinno R, Rota-Stabelli O, Gabrielli M, Benazzo A, Matschiner M, Soares LS, Bolten AB, Bjorndal KA, Bertorelle G. Divergence and hybridization in sea turtles: Inferences from genome data show evidence of ancient gene flow between species. Molecular Ecology. PMID 34390061 DOI: 10.1111/mec.16113   
2021 Baker CM, Buckman-Young RS, Costa CS, Giribet G. Phylogenomic analysis of velvet worms (Onychophora) uncovers an evolutionary radiation in the Neotropics. Molecular Biology and Evolution. PMID 34427671 DOI: 10.1093/molbev/msab251   
2021 Larson DA, Vargas OM, Vicentini A, Dick CW. Admixture may be extensive among hyperdominant Amazon rainforest tree species. The New Phytologist. PMID 34389989 DOI: 10.1111/nph.17675   
2021 Yao G, Xue B, Liu K, Li Y, Huang J, Zhai J. Phylogenetic estimation and morphological evolution of Alsineae (Caryophyllaceae) shed new insight into the taxonomic status of the genus . Plant Diversity. 43: 299-307. PMID 34485772 DOI: 10.1016/j.pld.2020.11.001   
2021 Khan BM, Sabir M, Alyemeni MN, Kaushik P, Saeed M, Raza G, Khan KA, Habiba U. Genetic similarities and phylogenetic analysis of Muntjac (Muntiacus spp.) by comparing the nucleotide sequence of 16S rRNA and cytochrome B genome. Brazilian Journal of Biology = Revista Brasleira De Biologia. 83: e248153. PMID 34468532 DOI: 10.1590/1519-6984.248153   
2021 Li X, Chen T, Zhang X, Yang L, Pan X, Wang Y. The complete mitochondrial genome of (Diptera: Sarcophagidae). Mitochondrial Dna. Part B, Resources. 6: 2832-2834. PMID 34514144 DOI: 10.1080/23802359.2021.1923424   
2021 Mendes SL, Machado MP, Coelho MM, Sousa VC. Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. Heredity. PMID 34462578 DOI: 10.1038/s41437-021-00466-1   
2021 Bernot JP, Boxshall GA, Crandall KA. A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism. Peerj. 9: e12034. PMID 34466296 DOI: 10.7717/peerj.12034   
2021 Zhang ZY, Shao QY, Li X, Chen WH, Liang JD, Han YF, Huang JZ, Liang ZQ. Culturable Fungi from Urban Soils in China I: Description of 10 New Taxa. Microbiology Spectrum. e0086721. PMID 34612666 DOI: 10.1128/Spectrum.00867-21   
2021 Flores JR, Bippus AC, Suárez GM, Hyvönen J. Defying death: incorporating fossils into the phylogeny of the complex thalloid liverworts (Marchantiidae, Marchantiophyta) confirms high order clades but reveals discrepancies in family-level relationships. Cladistics : the International Journal of the Willi Hennig Society. 37: 231-247. PMID 34478198 DOI: 10.1111/cla.12442   
2021 Varsani A, Opriessnig T, Celer V, Maggi F, Okamoto H, Blomström AL, Cadar D, Harrach B, Biagini P, Kraberger S. Taxonomic update for mammalian anelloviruses (family Anelloviridae). Archives of Virology. 166: 2943-2953. PMID 34383165 DOI: 10.1007/s00705-021-05192-x   
2021 Parveen I, Techen N, Handy SM, Li J, Wu C, Chittiboyina AG, Khan IA. The Low Copy Nuclear Gene Region, Granule Bound Starch Synthase (GBSS1), as a Novel Mini-DNA Barcode for the Identification of Different Sage (Salvia) Species. Planta Medica. PMID 34544191 DOI: 10.1055/a-1618-6496