Eva M. Top - Publications

Affiliations: 
University of Idaho, Moscow, ID, United States 
Area:
Bioinformatics Biology, Microbiology Biology

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Botts RT, Apffel BA, Walters CJ, Davidson KE, Echols RS, Geiger MR, Guzman VL, Haase VS, Montana MA, La Chat CA, Mielke JA, Mullen KL, Virtue CC, Brown CJ, Top EM, et al. Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland. Frontiers in Microbiology. 8: 1922. PMID 29067005 DOI: 10.3389/fmicb.2017.01922  0.36
2017 Loftie-Eaton W, Bashford K, Quinn H, Dong K, Millstein J, Hunter S, Thomason MK, Merrikh H, Ponciano JM, Top EM. Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nature Ecology & Evolution. 1: 1354-1363. PMID 29046540 DOI: 10.1038/s41559-017-0243-2  0.44
2017 Ridenhour BJ, Metzger GA, France M, Gliniewicz K, Millstein J, Forney LJ, Top EM. Persistence of antibiotic resistance plasmids in bacterial biofilms. Evolutionary Applications. 10: 640-647. PMID 28616070 DOI: 10.1111/eva.12480  0.4
2017 Thomas CM, Thomson NR, Cerdeño-Tárraga AM, Brown CJ, Top EM, Frost LS. Annotation of plasmid genes. Plasmid. PMID 28365184 DOI: 10.1016/j.plasmid.2017.03.006  0.36
2016 Li H, Xu Z, Yang S, Li X, Top EM, Wang R, Zhang Y, Cai J, Yao F, Han X, Jiang Y. Responses of Soil Bacterial Communities to Nitrogen Deposition and Precipitation Increment Are Closely Linked with Aboveground Community Variation. Microbial Ecology. PMID 26838999 DOI: 10.1007/s00248-016-0730-z  0.44
2015 Borgogna TR, Borgogna JL, Mielke JA, Brown CJ, Top EM, Botts RT, Cummings DE. High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands. Microbial Drug Resistance (Larchmont, N.Y.). PMID 26670020 DOI: 10.1089/mdr.2015.0197  0.44
2015 Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance. Molecular Biology and Evolution. PMID 26668183 DOI: 10.1093/molbev/msv339  0.44
2015 Li X, Wang Y, Brown CJ, Yao F, Jiang Y, Top EM, Li H. Diversification of Broad Host Range Plasmids Correlates with the Presence of Antibiotic Resistance Genes. Fems Microbiology Ecology. PMID 26635412 DOI: 10.1093/femsec/fiv151  0.44
2015 Smalla K, Jechalke S, Top EM. Plasmid Detection, Characterization, and Ecology. Microbiology Spectrum. 3: PLAS-0038-2014. PMID 26104560 DOI: 10.1128/microbiolspec.PLAS-0038-2014  0.44
2014 Li X, Top EM, Wang Y, Brown CJ, Yao F, Yang S, Jiang Y, Li H. The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family. Frontiers in Microbiology. 5: 777. PMID 25628616 DOI: 10.3389/fmicb.2014.00777  0.44
2014 Loftie-Eaton W, Tucker A, Norton A, Top EM. Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence. Applied and Environmental Microbiology. 80: 5439-46. PMID 24973062 DOI: 10.1128/AEM.00793-14  0.44
2014 Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM. Draft Genome Sequence of Pseudomonas moraviensis R28-S. Genome Announcements. 2. PMID 24558233 DOI: 10.1128/genomeA.00035-14  0.44
2013 Brown CJ, Sen D, Yano H, Bauer ML, Rogers LM, Van der Auwera GA, Top EM. Diverse broad-host-range plasmids from freshwater carry few accessory genes. Applied and Environmental Microbiology. 79: 7684-95. PMID 24096417 DOI: 10.1128/AEM.02252-13  0.44
2013 Yano H, Rogers LM, Knox MG, Heuer H, Smalla K, Brown CJ, Top EM. Host range diversification within the IncP-1 plasmid group. Microbiology (Reading, England). 159: 2303-15. PMID 24002747 DOI: 10.1099/mic.0.068387-0  0.44
2013 Oliveira CS, Moura A, Henriques I, Brown CJ, Rogers LM, Top EM, Correia A. Comparative genomics of IncP-1ε plasmids from water environments reveals diverse and unique accessory genetic elements. Plasmid. 70: 412-9. PMID 23831558 DOI: 10.1016/j.plasmid.2013.06.002  0.44
2013 Król JE, Wojtowicz AJ, Rogers LM, Heuer H, Smalla K, Krone SM, Top EM. Invasion of E. coli biofilms by antibiotic resistance plasmids. Plasmid. 70: 110-9. PMID 23558148 DOI: 10.1016/j.plasmid.2013.03.003  0.44
2013 Sen D, Brown CJ, Top EM, Sullivan J. Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees. Molecular Biology and Evolution. 30: 154-66. PMID 22936717 DOI: 10.1093/molbev/mss210  0.36
2012 Van Meervenne E, Van Coillie E, Kerckhof FM, Devlieghere F, Herman L, De Gelder LS, Top EM, Boon N. Strain-specific transfer of antibiotic resistance from an environmental plasmid to foodborne pathogens. Journal of Biomedicine & Biotechnology. 2012: 834598. PMID 22791963 DOI: 10.1155/2012/834598  0.44
2012 Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM. The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. Mbio. 3: e00077-12. PMID 22761390 DOI: 10.1128/mBio.00077-12  0.44
2012 Stolze Y, Eikmeyer F, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. Microbiology (Reading, England). 158: 2060-72. PMID 22653947 DOI: 10.1099/mic.0.059220-0  0.44
2012 Eikmeyer F, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CJ, Top EM, Pühler A, Schlüter A. The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid. 68: 13-24. PMID 22326849 DOI: 10.1016/j.plasmid.2012.01.011  0.44
2012 Yano H, Deckert GE, Rogers LM, Top EM. Roles of long and short replication initiation proteins in the fate of IncP-1 plasmids. Journal of Bacteriology. 194: 1533-43. PMID 22228734 DOI: 10.1128/JB.06395-11  0.44
2012 Zhong X, Droesch J, Fox R, Top EM, Krone SM. On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations. Journal of Theoretical Biology. 294: 144-52. PMID 22085738 DOI: 10.1016/j.jtbi.2011.10.034  0.44
2011 Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top EM. Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes. Applied and Environmental Microbiology. 77: 7975-83. PMID 21948829 DOI: 10.1128/AEM.05439-11  0.44
2011 Król JE, Nguyen HD, Rogers LM, Beyenal H, Krone SM, Top EM. Increased transfer of a multidrug resistance plasmid in Escherichia coli biofilms at the air-liquid interface. Applied and Environmental Microbiology. 77: 5079-88. PMID 21642400 DOI: 10.1128/AEM.00090-11  0.44
2011 Subbiah M, Top EM, Shah DH, Call DR. Selection pressure required for long-term persistence of blaCMY-2-positive IncA/C plasmids. Applied and Environmental Microbiology. 77: 4486-93. PMID 21602382 DOI: 10.1128/AEM.02788-10  0.44
2011 Szczepanowski R, Eikmeyer F, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A. Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology. 155: 95-103. PMID 21115076 DOI: 10.1016/j.jbiotec.2010.11.018  0.44
2010 Suzuki H, Yano H, Brown CJ, Top EM. Predicting plasmid promiscuity based on genomic signature. Journal of Bacteriology. 192: 6045-55. PMID 20851899 DOI: 10.1128/JB.00277-10  0.36
2010 Sota M, Yano H, Hughes JM, Daughdrill GW, Abdo Z, Forney LJ, Top EM. Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. The Isme Journal. 4: 1568-80. PMID 20520653 DOI: 10.1038/ismej.2010.72  0.44
2010 Król JE, Rogers LM, Krone SM, Top EM. Dual reporter system for in situ detection of plasmid transfer under aerobic and anaerobic conditions. Applied and Environmental Microbiology. 76: 4553-6. PMID 20453134 DOI: 10.1128/AEM.00226-10  0.44
2010 Sen D, Yano H, Suzuki H, Król JE, Rogers L, Brown CJ, Top EM. Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone. Plasmid. 63: 98-107. PMID 20018208 DOI: 10.1016/j.plasmid.2009.11.005  0.36
2010 Zhong X, Krol JE, Top EM, Krone SM. Accounting for mating pair formation in plasmid population dynamics. Journal of Theoretical Biology. 262: 711-9. PMID 19835890 DOI: 10.1016/j.jtbi.2009.10.013  0.44
2009 Van der Auwera GA, Król JE, Suzuki H, Foster B, Van Houdt R, Brown CJ, Mergeay M, Top EM. Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids. Antonie Van Leeuwenhoek. 96: 193-204. PMID 19259779 DOI: 10.1007/s10482-009-9316-9  0.44
2009 Heuer H, Kopmann C, Binh CT, Top EM, Smalla K. Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environmental Microbiology. 11: 937-49. PMID 19055690 DOI: 10.1111/j.1462-2920.2008.01819.x  0.44
2008 Suzuki H, Sota M, Brown CJ, Top EM. Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. Nucleic Acids Research. 36: e147. PMID 18953039 DOI: 10.1093/nar/gkn753  0.44
2008 Suzuki H, Brown CJ, Forney LJ, Top EM. Comparison of correspondence analysis methods for synonymous codon usage in bacteria. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 15: 357-65. PMID 18940873 DOI: 10.1093/dnares/dsn028  0.44
2008 Fox RE, Zhong X, Krone SM, Top EM. Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations. The Isme Journal. 2: 1024-39. PMID 18528415 DOI: 10.1038/ismej.2008.53  0.44
2008 De Gelder L, Williams JJ, Ponciano JM, Sota M, Top EM. Adaptive plasmid evolution results in host-range expansion of a broad-host-range plasmid. Genetics. 178: 2179-90. PMID 18430943 DOI: 10.1534/genetics.107.084475  0.44
2007 Krone SM, Lu R, Fox R, Suzuki H, Top EM. Modelling the spatial dynamics of plasmid transfer and persistence. Microbiology (Reading, England). 153: 2803-16. PMID 17660444 DOI: 10.1099/mic.0.2006/004531-0  0.44
2007 Schlüter A, Szczepanowski R, Pühler A, Top EM. Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. Fems Microbiology Reviews. 31: 449-77. PMID 17553065 DOI: 10.1111/j.1574-6976.2007.00074.x  0.44
2007 Sota M, Tsuda M, Yano H, Suzuki H, Forney LJ, Top EM. Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids. Journal of Bacteriology. 189: 3091-8. PMID 17277066 DOI: 10.1128/JB.01906-06  0.44
2007 De Gelder L, Ponciano JM, Joyce P, Top EM. Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiology (Reading, England). 153: 452-63. PMID 17259616 DOI: 10.1099/mic.0.2006/001784-0  0.44
2007 Ponciano JM, De Gelder L, Top EM, Joyce P. The population biology of bacterial plasmids: a hidden Markov model approach. Genetics. 176: 957-68. PMID 17151258 DOI: 10.1534/genetics.106.061937  0.44
2006 Kamachi K, Sota M, Tamai Y, Nagata N, Konda T, Inoue T, Top EM, Arakawa Y. Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements. Microbiology (Reading, England). 152: 3477-84. PMID 17159199 DOI: 10.1099/mic.0.29056-0  0.44
2006 Sota M, Yano H, Ono A, Miyazaki R, Ishii H, Genka H, Top EM, Tsuda M. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. Journal of Bacteriology. 188: 4057-67. PMID 16707697 DOI: 10.1128/JB.00185-06  0.44
2005 De Gelder L, Vandecasteele FP, Brown CJ, Forney LJ, Top EM. Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community. Applied and Environmental Microbiology. 71: 5309-17. PMID 16151119 DOI: 10.1128/AEM.71.9.5309-5317.2005  0.44
2005 Schlüter A, Heuer H, Szczepanowski R, Poler SM, Schneiker S, Pühler A, Top EM. Plasmid pB8 is closely related to the prototype IncP-1beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein. Plasmid. 54: 135-48. PMID 16122561 DOI: 10.1016/j.plasmid.2005.03.001  0.44
2005 Joyce P, Abdo Z, Ponciano JM, De Gelder L, Forney LJ, Top EM. Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. Journal of Mathematical Biology. 50: 645-62. PMID 15614551 DOI: 10.1007/s00285-004-0300-8  0.44
2004 De Gelder L, Ponciano JM, Abdo Z, Joyce P, Forney LJ, Top EM. Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution. Genetics. 168: 1131-44. PMID 15579675 DOI: 10.1534/genetics.104.033431  0.44
2003 Gstalder ME, Faelen M, Mine N, Top EM, Mergeay M, Couturier M. Replication functions of new broad host range plasmids isolated from polluted soils. Research in Microbiology. 154: 499-509. PMID 14499936 DOI: 10.1016/S0923-2508(03)00143-8  0.44
2002 Boon N, De Gelder L, Lievens H, Siciliano SD, Top EM, Verstraete W. Bioaugmenting bioreactors for the continuous removal of 3-chloroaniline by a slow release approach. Environmental Science & Technology. 36: 4698-704. PMID 12433184 DOI: 10.1021/es020076q  0.44
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