Ralph A. Dean - Publications

North Carolina State University, Raleigh, NC 
Bioinformatics Biology, Molecular Biology, Plant Culture Agriculture, Microbiology Biology

90 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wang M, Eyre AW, Thon MR, Oh Y, Dean RA. Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds. Frontiers in Microbiology. 11: 559728. PMID 33013792 DOI: 10.3389/Fmicb.2020.559728  0.56
2016 Parker J, Oh Y, Moazami Y, Pierce JG, Loziuk PL, Dean RA, Muddiman DC. Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein. Analytical Biochemistry. PMID 27562526 DOI: 10.1016/J.Ab.2016.08.017  0.92
2016 Zhang N, Luo J, Rossman AY, Aoki T, Chuma I, Crous PW, Dean R, de Vries RP, Donofrio N, Hyde KD, Lebrun MH, Talbot NJ, Tharreau D, Tosa Y, Valent B, et al. Generic names in Magnaporthales. Ima Fungus. 7: 155-9. PMID 27433445 DOI: 10.5598/imafungus.2016.07.01.09  0.2
2016 Sharpee W, Oh Y, Yi M, Franck W, Eyre A, Okagaki L, Valent B, Dean R. Identification and Characterization of Suppressors of Plant Cell Death (SPD) Genes from Magnaporthe oryzae. Molecular Plant Pathology. PMID 27301772 DOI: 10.1111/Mpp.12449  0.92
2016 Okagaki LH, Sailsbery JK, Eyre AW, Dean RA. Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi. Bmc Genomics. 17: 135. PMID 26911875 DOI: 10.1186/S12864-016-2491-Y  0.92
2016 Okagaki LH, Dean RA. The influence of funding sources on the scientific method. Molecular Plant Pathology. PMID 26840926 DOI: 10.1111/Mpp.12380  0.92
2015 Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, ... ... Dean RA, et al. Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi. G3 (Bethesda, Md.). PMID 26416668 DOI: 10.1534/G3.115.020057  0.92
2015 Franck WL, Gokce E, Randall SM, Oh Y, Eyre A, Muddiman DC, Dean RA. Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development. Journal of Proteome Research. 14: 2408-24. PMID 25926025 DOI: 10.1021/Pr501064Q  0.92
2015 Jeon J, Choi J, Lee GW, Park SY, Huh A, Dean RA, Lee YH. Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae. Scientific Reports. 5: 8567. PMID 25708804 DOI: 10.1038/Srep08567  0.92
2014 Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA. Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3. Fems Microbiology Letters. 352: 165-73. PMID 24461055 DOI: 10.1111/1574-6968.12387  0.92
2014 Dean RA, Lichens-Park A, Kole C. Preface Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens. v-viii. DOI: 10.1007/978-3-662-44056-8  0.92
2013 Franck WL, Gokce E, Oh Y, Muddiman DC, Dean RA. Temporal analysis of the magnaporthe oryzae proteome during conidial germination and cyclic AMP (cAMP)-mediated appressorium formation. Molecular & Cellular Proteomics : McP. 12: 2249-65. PMID 23665591 DOI: 10.1074/Mcp.M112.025874  0.92
2012 Gokce E, Franck WL, Oh Y, Dean RA, Muddiman DC. In-depth analysis of the Magnaporthe oryzae conidial proteome. Journal of Proteome Research. 11: 5827-35. PMID 23039028 DOI: 10.1021/Pr300604S  0.92
2012 Sailsbery JK, Dean RA. Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites. Bmc Evolutionary Biology. 12: 154. PMID 22920570 DOI: 10.1186/1471-2148-12-154  0.92
2012 Oh Y, Franck WL, Han SO, Shows A, Gokce E, Muddiman DC, Dean RA. Polyubiquitin is required for growth, development and pathogenicity in the rice blast fungus Magnaporthe oryzae. Plos One. 7: e42868. PMID 22900059 DOI: 10.1371/Journal.Pone.0042868  0.92
2012 Xue M, Yang J, Li Z, Hu S, Yao N, Dean RA, Zhao W, Shen M, Zhang H, Li C, Liu L, Cao L, Xu X, Xing Y, Hsiang T, et al. Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae. Plos Genetics. 8: e1002869. PMID 22876203 DOI: 10.1371/Journal.Pgen.1002869  0.92
2012 Sailsbery JK, Atchley WR, Dean RA. Phylogenetic analysis and classification of the fungal bHLH domain. Molecular Biology and Evolution. 29: 1301-18. PMID 22114358 DOI: 10.1093/Molbev/Msr288  0.92
2012 Nunes CC, Dean RA. Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies. Molecular Plant Pathology. 13: 519-29. PMID 22111693 DOI: 10.1111/J.1364-3703.2011.00766.X  0.92
2011 Gokce E, Shuford CM, Franck WL, Dean RA, Muddiman DC. Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows. Journal of the American Society For Mass Spectrometry. 22: 2199-208. PMID 21952779 DOI: 10.1007/S13361-011-0237-2  0.92
2011 Collier TS, Randall SM, Sarkar P, Rao BM, Dean RA, Muddiman DC. Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression. Rapid Communications in Mass Spectrometry : Rcm. 25: 2524-32. PMID 21818813 DOI: 10.1002/Rcm.5151  0.92
2011 Nunes CC, Gowda M, Sailsbery J, Xue M, Chen F, Brown DE, Oh Y, Mitchell TK, Dean RA. Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae. Bmc Genomics. 12: 288. PMID 21635781 DOI: 10.1186/1471-2164-12-288  0.92
2011 Li G, Zhou X, Kong L, Wang Y, Zhang H, Zhu H, Mitchell TK, Dean RA, Xu JR. MoSfl1 is important for virulence and heat tolerance in Magnaporthe oryzae. Plos One. 6: e19951. PMID 21625508 DOI: 10.1371/Journal.Pone.0019951  0.44
2011 Andrews GL, Dean RA, Hawkridge AM, Muddiman DC. Improving proteome coverage on a LTQ-Orbitrap using design of experiments. Journal of the American Society For Mass Spectrometry. 22: 773-83. PMID 21472614 DOI: 10.1007/S13361-011-0075-2  0.92
2011 Gokce E, Andrews GL, Dean RA, Muddiman DC. Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 879: 610-4. PMID 21342794 DOI: 10.1016/J.Jchromb.2011.01.032  0.92
2011 Nunes CC, Sailsbery JK, Dean RA. Characterization and application of small RNAs and RNA silencing mechanisms in fungi Fungal Biology Reviews. 25: 172-180. DOI: 10.1016/J.Fbr.2011.10.001  0.92
2010 Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, et al. Unifying themes in microbial associations with animal and plant hosts described using the gene ontology. Microbiology and Molecular Biology Reviews : Mmbr. 74: 479-503. PMID 21119014 DOI: 10.1128/Mmbr.00017-10  0.92
2010 Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC. Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics. Analytical Chemistry. 82: 8696-702. PMID 20845935 DOI: 10.1021/Ac101978B  0.92
2010 Gowda M, Nunes CC, Sailsbery J, Xue M, Chen F, Nelson CA, Brown DE, Oh Y, Meng S, Mitchell T, Hagedorn CH, Dean RA. Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae. Nucleic Acids Research. 38: 7558-69. PMID 20660015 DOI: 10.1093/Nar/Gkq583  0.92
2010 Kim S, Hu J, Oh Y, Park J, Choi J, Lee YH, Dean RA, Mitchell TK. Combining ChIP-chip and expression profiling to model the MoCRZ1 mediated circuit for Ca/calcineurin signaling in the rice blast fungus. Plos Pathogens. 6: e1000909. PMID 20502632 DOI: 10.1371/Journal.Ppat.1000909  0.44
2010 Yu J, Nierman WC, Bennett JW, Cleveland TE, Bhatnagar D, Campbell BC, Dean RA, Payne G. Genetics and Genomics of aspergillus Fla VUS Progress in Mycology. 51-73. DOI: 10.1007/978-90-481-3713-8_2  0.92
2009 Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA. Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae. Bmc Microbiology. 9: S8. PMID 19278556 DOI: 10.1186/1471-2180-9-S1-S8  0.92
2009 Meng S, Torto-Alalibo T, Chibucos MC, Tyler BM, Dean RA. Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms. Bmc Microbiology. 9: S7. PMID 19278555 DOI: 10.1186/1471-2180-9-S1-S7  0.92
2008 Brown DE, Powell AJ, Carbone I, Dean RA. GT-Miner: a graph-theoretic data miner, viewer, and model processor. Bioinformation. 3: 235-7. PMID 19255640 DOI: 10.6026/97320630003235  0.4
2008 Yu J, Payne GA, Nierman WC, Machida M, Bennett JW, Campbell BC, Robens JF, Bhatnagar D, Dean RA, Cleveland TE. Aspergillus flavus genomics as a tool for studying the mechanism of aflatoxin formation. Food Additives & Contaminants. Part a, Chemistry, Analysis, Control, Exposure & Risk Assessment. 25: 1152-7. PMID 19238624 DOI: 10.1080/02652030802213375  0.92
2008 Smith CA, Robertson D, Yates B, Nielsen DM, Brown D, Dean RA, Payne GA. The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus. Current Genetics. 54: 241-69. PMID 18813928 DOI: 10.1007/S00294-008-0215-9  0.92
2008 Oh Y, Donofrio N, Pan H, Coughlan S, Brown DE, Meng S, Mitchell T, Dean RA. Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae. Genome Biology. 9: R85. PMID 18492280 DOI: 10.1186/Gb-2008-9-5-R85  0.92
2008 Powell AJ, Conant GC, Brown DE, Carbone I, Dean RA. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. Bmc Genomics. 9: 147. PMID 18373860 DOI: 10.1186/1471-2164-9-147  0.92
2008 Altunay M, Byrd GT, Brown DE, Dean RA. An Interaction-based Access Control model (IBAC) for collaborative services 2008 International Symposium On Collaborative Technologies and Systems, Cts'08. 547-554. DOI: 10.1109/CTS.2008.4543977  0.92
2007 Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, et al. What can comparative genomics tell us about species concepts in the genus Aspergillus? Studies in Mycology. 59: 11-7. PMID 18490942 DOI: 10.3114/Sim.2007.59.02  0.92
2007 Adomas A, Heller G, Li G, Olson A, Chu TM, Osborne J, Craig D, van Zyl L, Wolfinger R, Sederoff R, Dean RA, Stenlid J, Finlay R, Asiegbu FO. Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion. Tree Physiology. 27: 1441-58. PMID 17669735 DOI: 10.1093/Treephys/27.10.1441  0.92
2007 Torto-Alalibo TA, Tripathy S, Smith BM, Arredondo FD, Zhou L, Li H, Chibucos MC, Qutob D, Gijzen M, Mao C, Sobral BW, Waugh ME, Mitchell TK, Dean RA, Tyler BM. Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection. Molecular Plant-Microbe Interactions : Mpmi. 20: 781-93. PMID 17601166 DOI: 10.1094/Mpmi-20-7-0781  0.92
2007 Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, et al. Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1035-49. PMID 17600737 DOI: 10.1016/J.Fgb.2007.05.001  0.92
2007 Jeong JS, Mitchell TK, Dean RA. The Magnaporthe grisea snodprot1 homolog, MSP1, is required for virulence. Fems Microbiology Letters. 273: 157-65. PMID 17590228 DOI: 10.1111/J.1574-6968.2007.00796.X  0.92
2007 Meng Y, Patel G, Heist M, Betts MF, Tucker SL, Galadima N, Donofrio NM, Brown D, Mitchell TK, Li L, Xu JR, Orbach M, Thon M, Dean RA, Farman ML. A systematic analysis of T-DNA insertion events in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1050-64. PMID 17544743 DOI: 10.1016/J.Fgb.2007.04.002  0.92
2007 Deng J, Carbone I, Dean RA. The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes. Bmc Evolutionary Biology. 7: 30. PMID 17324274 DOI: 10.1186/1471-2148-7-30  0.92
2007 Shi J, Sharma-Shivappa RR, Chinn M, Dean RA, Shivappa RB. Challenges in quantification of ligninolytic enzymes from Phanerochaete chrysosporium cultivation for pretreatment of cotton stalks Transactions of the Asabe. 50: 2347-2354.  0.92
2006 Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310  0.92
2006 Soderlund C, Haller K, Pampanwar V, Ebbole D, Farman M, Orbach MJ, Wang GL, Wing R, Xu JR, Brown D, Mitchell T, Dean R. MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions. Molecular Plant-Microbe Interactions : Mpmi. 19: 1055-61. PMID 17022169 DOI: 10.1094/Mpmi-19-1055  0.92
2006 Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Research. 34: 4685-701. PMID 16963777 DOI: 10.1093/Nar/Gkl588  0.52
2006 Donofrio NM, Oh Y, Lundy R, Pan H, Brown DE, Jeong JS, Coughlan S, Mitchell TK, Dean RA. Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea Fungal Genetics and Biology. 43: 605-617. PMID 16731015 DOI: 10.1016/J.Fgb.2006.03.005  0.92
2006 Thon MR, Pan H, Diener S, Papalas J, Taro A, Mitchell TK, Dean RA. The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biology. 7: R16. PMID 16507177 DOI: 10.1186/Gb-2006-7-2-R16  0.92
2006 Altunay M, Brown DE, Byrd GT, Dean RA. Collaboration policies: Access control management in decentralized heterogeneous workflows Journal of Software. 1: 11-22. DOI: 10.4304/Jsw.1.1.11-22  0.92
2006 Payne GA, Nierman WC, Wortman JR, Pritchard BL, Brown D, Dean RA, Bhatnagar D, Cleveland TE, Machida M, Yu J. Whole genome comparison of Aspergillus flavus and A. oryzae Medical Mycology. 44: 9-11. DOI: 10.1080/13693780600835716  0.92
2005 Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/Pp.105.066134  0.92
2005 Dean R, Mitchell T, Donofrio N, Jeong JS, Powell A. Fungal biology reaps the benefit of genomics. Genome Biology. 6: 336. PMID 16086860 DOI: 10.1186/Gb-2005-6-8-336  0.52
2005 Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA. Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system. Bmc Bioinformatics. 6: 147. PMID 15958161 DOI: 10.1186/1471-2105-6-147  0.92
2005 Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/Pp.104.055624  0.92
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449  0.92
2005 Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, ... ... Dean RA, et al. 'PACLIMS': a component LIM system for high-throughput functional genomic analysis. Bmc Bioinformatics. 6: 94. PMID 15826298 DOI: 10.1186/1471-2105-6-94  0.92
2005 Kulkarni RD, Thon MR, Pan H, Dean RA. Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biology. 6: R24. PMID 15774025 DOI: 10.1186/Gb-2005-6-3-R24  0.92
2005 Altunay M, Brown D, Byrd G, Dean RA. Evaluation of mutual trust during matchmaking Proceedings - Fifth Ieee International Conference On Peer-to-Peer Computing, P2p 2005. 2005: 133-140. DOI: 10.1109/P2P.2005.9  0.92
2005 Altunay M, Brown D, Byrd G, Dean R. Trust-based secure workflow path construction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3826: 382-395. DOI: 10.1007/11596141_29  0.92
2004 Ebbole DJ, Jin Y, Thon M, Pan H, Bhattarai E, Thomas T, Dean R. Gene discovery and gene expression in the rice blast fungus, Magnaporthe grisea: analysis of expressed sequence tags. Molecular Plant-Microbe Interactions : Mpmi. 17: 1337-47. PMID 15597739 DOI: 10.1094/Mpmi.2004.17.12.1337  0.92
2004 Diener SE, Chellappan MK, Mitchell TK, Dunn-Coleman N, Ward M, Dean RA. Insight into Trichoderma reesei's genome content, organization and evolution revealed through BAC library characterization. Fungal Genetics and Biology : Fg & B. 41: 1077-87. PMID 15531212 DOI: 10.1016/J.Fgb.2004.08.007  0.92
2004 Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/J.Fgb.2004.02.003  0.92
2004 Joobeur T, King JJ, Nolin SJ, Thomas CE, Dean RA. The Fusarium wilt resistance locus Fom-2 of melon contains a single resistance gene with complex features. The Plant Journal : For Cell and Molecular Biology. 39: 283-97. PMID 15255859 DOI: 10.1111/J.1365-313X.2004.02134.X  0.92
2004 Diener SE, Dunn-Coleman N, Foreman P, Houfek TD, Teunissen PJ, van Solingen P, Dankmeyer L, Mitchell TK, Ward M, Dean RA. Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei. Fems Microbiology Letters. 230: 275-82. PMID 14757250 DOI: 10.1016/S0378-1097(03)00916-9  0.92
2004 Asiegbu FO, Choi W, Jeong JS, Dean RA. Cloning, sequencing and functional analysis of Magnaporthe grisea MVP1 gene, a hex-1 homolog encoding a putative 'woronin body' protein. Fems Microbiology Letters. 230: 85-90. PMID 14734169 DOI: 10.1016/S0378-1097(03)00858-9  0.92
2003 K Mitchell T, Thon MR, Jeong JS, Brown D, Deng J, Dean RA. The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens. The New Phytologist. 159: 53-61. PMID 33873673 DOI: 10.1046/j.1469-8137.2003.00787.x  0.52
2003 Takano Y, Choi W, Mitchell TK, Okuno T, Dean RA. Large scale parallel analysis of gene expression during infection-related morphogenesis of Magnaporthe grisea. Molecular Plant Pathology. 4: 337-46. PMID 20569394 DOI: 10.1046/J.1364-3703.2003.00182.X  0.44
2003 Asiegbu FO, Choi W, Li G, Nahalkova J, Dean RA. Isolation of a novel antimicrobial peptide gene (Sp-AMP) homologue from Pinus sylvestris (Scots pine) following infection with the root rot fungus Heterobasidion annosum. Fems Microbiology Letters. 228: 27-31. PMID 14612232 DOI: 10.1016/S0378-1097(03)00697-9  0.4
2003 Foreman PK, Brown D, Dankmeyer L, Dean R, Diener S, Dunn-Coleman NS, Goedegebuur F, Houfek TD, England GJ, Kelley AS, Meerman HJ, Mitchell T, Mitchinson C, Olivares HA, Teunissen PJ, et al. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. The Journal of Biological Chemistry. 278: 31988-97. PMID 12788920 DOI: 10.1074/Jbc.M304750200  0.92
2002 Somai BM, Dean RA, Farnham MW, Zitter TA, Keinath AP. Internal Transcribed Spacer Regions 1 and 2 and Random Amplified Polymorphic DNA Analysis of Didymella bryoniae and Related Phoma Species Isolated from Cucurbits. Phytopathology. 92: 997-1004. PMID 18944025 DOI: 10.1094/Phyto.2002.92.9.997  0.92
2002 Xue C, Park G, Choi W, Zheng L, Dean RA, Xu JR. Two novel fungal virulence genes specifically expressed in appressoria of the rice blast fungus. The Plant Cell. 14: 2107-19. PMID 12215509 DOI: 10.1105/Tpc.003426  0.4
2002 Wang YH, Choi W, Thomas CE, Dean RA. Cloning of disease-resistance homologues in end sequences of BAC clones linked to Fom-2, a gene conferring resistance to Fusarium wilt in melon (Cucumis melo L.). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 473-80. PMID 12033615 DOI: 10.1139/G02-005  0.92
2002 Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Dean RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485  0.92
2002 Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272 DOI: 10.1093/Nar/30.1.121  0.92
2001 Rauyaree P, Choi W, Fang E, Blackmon B, Dean RA. Genes expressed during early stages of rice infection with the rice blast fungus Magnaporthe grisea. Molecular Plant Pathology. 2: 347-54. PMID 20573024 DOI: 10.1046/J.1464-6722.2001.00085.X  0.92
2001 Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M. Global analysis of protein activities using proteome chips. Science (New York, N.Y.). 293: 2101-5. PMID 11474067 DOI: 10.1126/science.1062191  0.92
2001 Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA. A framework for sequencing the rice genome. Novartis Foundation Symposium. 236: 13-24; discussion 24. PMID 11387975 DOI: 10.1002/9780470515778.Ch3  0.92
2001 Luo M, Wang YH, Frisch D, Joobeur T, Wing RA, Dean RA. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2) Genome. 44: 154-162. PMID 11341724 DOI: 10.1139/Gen-44-2-154  0.92
2000 Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA. Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Research. 10: 982-90. PMID 10899147 DOI: 10.1101/Gr.10.7.982  0.92
2000 Wang YH, Thomas CE, Dean RA. Genetic mapping of a fusarium wilt resistance gene (Fom-2) in melon (Cucumis melo L.) Molecular Breeding. 6: 379-389. DOI: 10.1023/A:1009671925793  0.92
1999 Tomkins JP, Miller-Smith H, Sasinowski M, Choi S, Sasinowska H, Verce MF, Freedman DL, Dean RA, Wing RA. Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs Microbial and Comparative Genomics. 4: 203-217. PMID 10587947 DOI: 10.1089/Omi.1.1999.4.203  0.92
1998 Wechter WP, Dean RA, Thomas CE. Development of sequence-specific primers that amplify a 1.5-kb DNA marker for race 1 Fusarium wilt resistance in Cucumis melo L Hortscience. 33: 291-292. DOI: 10.21273/Hortsci.33.2.291  0.92
1997 Shieh MT, Brown RL, Whitehead MP, Cary JW, Cotty PJ, Cleveland TE, Dean RA. Molecular genetic evidence for the involvement of a specific polygalacturonase, P2c, in the invasion and spread of Aspergillus flavus in cotton bolls Applied and Environmental Microbiology. 63: 3548-3552. PMID 9293005 DOI: 10.1128/Aem.63.9.3548-3552.1997  0.92
1997 Zhu H, Choi S, Johnston AK, Wing RA, Dean RA. A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning Fungal Genetics and Biology. 21: 337-347. PMID 9290247 DOI: 10.1006/Fgbi.1997.0996  0.92
1995 Cary JW, Brown R, Cleveland TE, Whitehead M, Dean RA. Cloning and characterization of a novel polygalacturonase-encoding gene from Aspergillus parasiticus Gene. 153: 129-133. PMID 7883176 DOI: 10.1016/0378-1119(94)00749-I  0.92
1995 Whitehead MP, Shieh MT, Cleveland TE, Cary JW, Dean RA. Isolation and characterization of polygalacturonase genes (pecA and pecB) from Aspergillus flavus Applied and Environmental Microbiology. 61: 3316-3322. PMID 7574642 DOI: 10.1128/Aem.61.9.3316-3322.1995  0.92
1995 Wechter WP, Whitehead MP, Thomas CE, Dean RA. Identification of a randomly amplified polymorphic DNA marker linked to the Fom 2 fusarium wilt resistance gene in muskmelon MR-1 Phytopathology. 85: 1245-1249. DOI: 10.1094/Phyto-85-1245  0.92
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