Ralph A. Dean - Related publications

Affiliations: 
North Carolina State University, Raleigh, NC 
Area:
Bioinformatics Biology, Molecular Biology, Plant Culture Agriculture, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Wakao S, Shih PM, Guan K, Schackwitz W, Ye J, Patel D, Shih RM, Dent RM, Chovatia M, Sharma A, Martin J, Wei CL, Niyogi KK. Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. Plos Genetics. 17: e1009725. PMID 34492001 DOI: 10.1371/journal.pgen.1009725   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Nie W, Zheng X, Wang S, Ahmad I, Zhu B. Genome resource of Ancylobacter pratisalsi E130 T: A novel plant growth-promoting bacterium isolated from the rhizosphere. Phytopathology. PMID 34353121 DOI: 10.1094/PHYTO-06-21-0251-A   
2021 Leão C, Clemente L, Moura L, Seyfarth AM, Hansen IM, Hendriksen RS, Amaro A. Emergence and Clonal Spread of CTX-M-65-Producing From Retail Meat in Portugal. Frontiers in Microbiology. 12: 653595. PMID 34354678 DOI: 10.3389/fmicb.2021.653595   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Niu Z, Zhu F, Fan Y, Li C, Zhang B, Zhu S, Hou Z, Wang M, Yang J, Xue Q, Liu W, Ding X. The chromosome-level reference genome assembly for and its utility of functional genomics research and molecular breeding study. Acta Pharmaceutica Sinica. B. 11: 2080-2092. PMID 34386340 DOI: 10.1016/j.apsb.2021.01.019   
2021 Andronis CE, Hane JK, Bringans S, Hardy GESJ, Jacques S, Lipscombe R, Tan KC. Gene Validation and Remodelling Using Proteogenomics of , the Causal Agent of Dieback. Frontiers in Microbiology. 12: 665396. PMID 34394023 DOI: 10.3389/fmicb.2021.665396   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Wang L, Liao B, Gong L, Xiao S, Huang Z. Haploid Genome Analysis Reveals a Tandem Cluster of Four Genes Involved in the High-Temperature Adaptation of . Microbiology Spectrum. e0028721. PMID 34406871 DOI: 10.1128/Spectrum.00287-21   
2021 Yuan XL, Zha DX, Xue L, Wang XY, Xu G, Li WB, Xu HQ. Complete chloroplast genome sequence of and its phylogenetic position. Mitochondrial Dna. Part B, Resources. 6: 2480-2481. PMID 34377800 DOI: 10.1080/23802359.2021.1915199   
2021 Jiang M, Zhu Y, Wu Q, Zhang H. Complete chloroplast genome of a rare and endangered plant species : genomic features and phylogenetic relationship within Orchidaceae. Mitochondrial Dna. Part B, Resources. 6: 2872-2879. PMID 34532575 DOI: 10.1080/23802359.2021.1972049   
2021 Abdul Haseeb H, Hyder S, Gao M, Guo W. Genome Sequence Resource of Padwick Strain HN-1, a Causal Agent of Maize Stalk Rot Disease. Plant Disease. PMID 34328362 DOI: 10.1094/PDIS-04-21-0887-A   
2021 Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Lee G, Kim MJ, Shin JH. Data on complete genome sequence and annotation of LMG 24727. Data in Brief. 38: 107271. PMID 34430681 DOI: 10.1016/j.dib.2021.107271   
2021 Agarwal G, Choudhary D, Stice SP, Myers BK, Gitaitis RD, Venter SN, Kvitko BH, Dutta B. Pan-Genome-Wide Analysis of Identified Genes Linked to Pathogenicity in Onion. Frontiers in Microbiology. 12: 684756. PMID 34489883 DOI: 10.3389/fmicb.2021.684756   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun D. A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in . Frontiers in Microbiology. 12: 709571. PMID 34413842 DOI: 10.3389/fmicb.2021.709571   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Wang H, Sha X, Li R, Li Y, Khaleque HN, Zhang Y, Bohu T, Bai Z, Zhuang X. Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium EBL0706 as a Strain of . Microorganisms. 9. PMID 34442833 DOI: 10.3390/microorganisms9081754   
2021 Paterson GK. Genomic epidemiology of the opportunistic pathogen from companion dogs. Journal of Medical Microbiology. 70. PMID 34431760 DOI: 10.1099/jmm.0.001407   
2021 Anene-Nzelu CG, Lee MCJ, Tan WLW, Dashi A, Foo RSY. Genomic enhancers in cardiac development and disease. Nature Reviews. Cardiology. PMID 34381190 DOI: 10.1038/s41569-021-00597-2   
2021 Zhang Y, Deng C, Yang J, Wang D, Deng G. The complete chloroplast genome of a medicinal plant Burm.f. (Loranthaceae). Mitochondrial Dna. Part B, Resources. 6: 2635-2637. PMID 34435106 DOI: 10.1080/23802359.2021.1962760   
2021 Qin X, Wang H, Miao C, Yang X, Zhang Y, Feng J, Forsythe SJ, Man C, Jiang Y. Comparative genomics reveals environmental adaptation differences between Cronobacter species. Food Research International (Ottawa, Ont.). 147: 110541. PMID 34399518 DOI: 10.1016/j.foodres.2021.110541   
2021 Mishra A, Gupta J, Kumari T, Pal R, Thakur IS. Unravelling the attributes of novel cyanobacteria Jacksonvillea sp. ISTCYN1 by draft genome sequencing. Bioresource Technology. 337: 125473. PMID 34320753 DOI: 10.1016/j.biortech.2021.125473   
2021 Ma L, Dong C, Song C, Wang X, Zheng X, Niu Y, Chen S, Feng W. genome assembly of the potent medicinal plant using nanopore technology. Computational and Structural Biotechnology Journal. 19: 3954-3963. PMID 34377362 DOI: 10.1016/j.csbj.2021.07.006   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Koseoglou E, van der Wolf JM, Visser RGF, Bai Y. Susceptibility reversed: modified plant susceptibility genes for resistance to bacteria. Trends in Plant Science. PMID 34400073 DOI: 10.1016/j.tplants.2021.07.018   
2021 Chen H, Chong X, Zhou Y, Sun L, Zhang F, Lu X, Li N, Zhou T, Li Y. Characterization and phylogenetic analysis of the complete chloroplast genome of , traditional Chinese medicine plant. Mitochondrial Dna. Part B, Resources. 6: 2791-2792. PMID 34514128 DOI: 10.1080/23802359.2021.1967804   
2021 Wang RH, Chen MM, Wu YZ, Wang RR, Xiao XF, Qi ZC, Yan XL. The complete chloroplast genome sequence of wild Japanese pepper Makino (Solanaceae). Mitochondrial Dna. Part B, Resources. 6: 2322-2323. PMID 34345686 DOI: 10.1080/23802359.2021.1950063   
2021 Li Y, Liu H, Zou J. Complete chloroplast genome of : a species endemic to Guizhou, China. Mitochondrial Dna. Part B, Resources. 6: 2596-2598. PMID 34395889 DOI: 10.1080/23802359.2021.1961625   
2021 Fang Y, Jiang J, Du Q, Luo L, Li X, Xie X. Cytochrome P450 Superfamily: Evolutionary and Functional Divergence in Sorghum () Stress Resistance. Journal of Agricultural and Food Chemistry. PMID 34495670 DOI: 10.1021/acs.jafc.1c03701   
2021 Shi M, Xie H, Zhao C, Shi L, Liu J, Li Z. The complete chloroplast genome of Koidz. ex Kitam. and its phylogenetic inference. Mitochondrial Dna. Part B, Resources. 6: 2038-2040. PMID 34377788 DOI: 10.1080/23802359.2021.1927217   
2021 Xia H, Liu X, Wang Y, Li X, Wang J, Jin C. The complete chloroplast genome sequence of (Bambusoideae). Mitochondrial Dna. Part B, Resources. 6: 2184-2185. PMID 34345678 DOI: 10.1080/23802359.2021.1944373   
2021 Li S, Shen F, Zhang S, Niu J, Niu Y, Li L, Zhao J. The complete chloroplast genome of (Hampe ex Ochi) Z. Iwatsuki and T. J. Koponen. Mitochondrial Dna. Part B, Resources. 6: 2632-2634. PMID 34409162 DOI: 10.1080/23802359.2021.1962759   
2021 Nitnaware KM, Raskar KB, Agarwal G, Chávez Montes RA, Chopra R, López-Arredondo DL, Nikam TD, Patil GB. Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution. 164: 107272. PMID 34332035 DOI: 10.1016/j.ympev.2021.107272   
2021 Fan ZF, Yu DY, Ma CL. The complete chloroplast genome sequence of Rolfe, a vulnerable wild moth orchid species (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2903-2905. PMID 34532582 DOI: 10.1080/23802359.2021.1923420   
2021 Qiu Z, Zhu Y, Du Z, Bao P. The complete chloroplast genome sequence of the mangrove associate species . Mitochondrial Dna. Part B, Resources. 6: 2376-2378. PMID 34345700 DOI: 10.1080/23802359.2021.1925171   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Chacón-Vargas K, McCarthy CO, Choi D, Wang L, Yu JH, Gibbons JG. Comparison of Two Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism. Frontiers in Microbiology. 12: 691296. PMID 34326825 DOI: 10.3389/fmicb.2021.691296   
2021 Gan J, Li Y, Wan Y, Li J, Zhang B. The complete mitochondrial genome sequence of (Anura: Ranidae). Mitochondrial Dna. Part B, Resources. 6: 2418-2419. PMID 34350353 DOI: 10.1080/23802359.2021.1920502   
2021 Kesawat MS, Kherawat BS, Singh A, Dey P, Kabi M, Debnath D, Saha D, Khandual A, Rout S, Manorama, Ali A, Palem RR, Gupta R, Kadam AA, Kim HU, et al. Genome-Wide Identification and Characterization of the Brassinazole-resistant () Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat ( L.). International Journal of Molecular Sciences. 22. PMID 34445448 DOI: 10.3390/ijms22168743   
2021 He J, Zhao C, Guo Y, Zhang H, Zhao B, Chu Z. Completely mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 6: 2708-2709. PMID 34435128 DOI: 10.1080/23802359.2021.1945966   
2021 Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. Plos Computational Biology. 17: e1009376. PMID 34491989 DOI: 10.1371/journal.pcbi.1009376   
2021 Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO. Gene-gene relationships in an accessory genome are linked to function and mobility. Microbial Genomics. 7. PMID 34499026 DOI: 10.1099/mgen.0.000650   
2021 He H, Fu J, Wang Q, Xi Q, Wei X, Zhao Y, Ling C, Chang T, Zhao Y. The complete chloroplast genome of L. Mitochondrial Dna. Part B, Resources. 6: 2526-2527. PMID 34377817 DOI: 10.1080/23802359.2021.1959446   
2021 Tu JL, Bai XY, Xu YL, Li N, Xu JW. Targeted gene insertion and replacement in the basidiomycete by inactivation of non-homologous end joining using CRISPR/Cas9. Applied and Environmental Microbiology. AEM0151021. PMID 34524900 DOI: 10.1128/AEM.01510-21