Arul Jayaraman - Publications

Affiliations: 
Texas A & M University, College Station, TX, United States 
Area:
Chemical Engineering, Microbiology Biology

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Park H, Jin UH, Orr AA, Echegaray SP, Davidson LA, Allred CD, Chapkin R, Jayaraman A, Lee K, Tamamis P, Safe SH. Isoflavones as Ah Receptor Agonists in Colon-Derived Cell Lines: Structure-Activity Relationships. Chemical Research in Toxicology. PMID 31621310 DOI: 10.1021/acs.chemrestox.9b00352  0.36
2019 Krishnan S, Ding Y, Saeidi N, Choi M, Sridharan GV, Sherr DH, Yarmush ML, Alaniz RC, Jayaraman A, Lee K. Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. Cell Reports. 28: 3285. PMID 31533048 DOI: 10.1016/j.celrep.2019.08.080  0.44
2019 Lee K, Jayaraman A. Interactions between gut microbiota and non-alcoholic liver disease: the role of microbiota-derived metabolites. Pharmacological Research. PMID 30818042 DOI: 10.1016/j.phrs.2019.02.013  0.36
2019 Ding Y, Yanagi K, Cheng C, Alaniz RC, Lee K, Jayaraman A. Interactions between gut microbiota and non-alcoholic liver disease: the role of microbiota-derived metabolites. Pharmacological Research. PMID 30660825 DOI: 10.1016/j.phrs.2019.01.029  0.44
2018 Sinkoe A, Jayaraman A, Hahn J. Dynamic optimal experimental design yields marginal improvement over steady-state results for computational maximisation of regulatory T-cell induction in ex vivo culture. Iet Systems Biology. 12: 241-246. PMID 30472687 DOI: 10.1049/iet-syb.2018.5014  0.52
2018 Abada B, Alivio TEG, Shao Y, O'Loughlin TE, Klemashevich C, Banerjee S, Jayaraman A, Chu KH. Photodegradation of fluorotelomer carboxylic 5:3 acid and perfluorooctanoic acid using zinc oxide. Environmental Pollution (Barking, Essex : 1987). 243: 637-644. PMID 30219589 DOI: 10.1016/j.envpol.2018.09.023  0.36
2018 Krishnan S, Ding Y, Saedi N, Choi M, Sridharan GV, Sherr DH, Yarmush ML, Alaniz RC, Jayaraman A, Lee K. Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. Cell Reports. 23: 1099-1111. PMID 29694888 DOI: 10.1016/j.celrep.2018.03.109  0.44
2018 Sule N, Penarete-Acosta D, Englert DL, Jayaraman A. A Static Microfluidic Device for Investigating the Chemotaxis Response to Stable, Non-linear Gradients. Methods in Molecular Biology (Clifton, N.J.). 1729: 47-59. PMID 29429081 DOI: 10.1007/978-1-4939-7577-8_5  0.64
2018 Kohli N, Crisp Z, Riordan R, Li M, Alaniz RC, Jayaraman A. The microbiota metabolite indole inhibits Salmonella virulence: Involvement of the PhoPQ two-component system. Plos One. 13: e0190613. PMID 29342189 DOI: 10.1371/journal.pone.0190613  0.44
2017 Jani S, Seely AL, Peabody V GL, Jayaraman A, Manson MD. Chemotaxis to self-generated AI-2 promotes biofilm formation in Escherichia coli. Microbiology (Reading, England). PMID 29125461 DOI: 10.1099/mic.0.000567  0.64
2017 Pasupuleti S, Sule N, Manson MD, Jayaraman A. Conversion of Norepinephrine to 3,4-Dihdroxymandelic Acid in Escherichia coli Requires the QseBC Quorum-Sensing System and the FeaR Transcription Factor. Journal of Bacteriology. PMID 29038253 DOI: 10.1128/JB.00564-17  0.64
2017 Sule N, Pasupuleti S, Kohli N, Menon R, Dangott LJ, Manson MD, Jayaraman A. The Norepinephrine Metabolite 3,4-Dihydroxymandelic Acid Is Produced by the Commensal Microbiota and Promotes Chemotaxis and Virulence Gene Expression in Enterohemorrhagic Escherichia coli. Infection and Immunity. PMID 28717028 DOI: 10.1128/IAI.00431-17  0.64
2017 Steinmeyer S, Howsmon DP, Alaniz RC, Hahn J, Jayaraman A. Empirical Modeling of T cell Activation Predicts Interplay of Host Cytokines and Bacterial Indole. Biotechnology and Bioengineering. PMID 28667749 DOI: 10.1002/bit.26371  0.52
2016 Whitfield-Cargile CM, Cohen ND, Chapkin RS, Weeks BR, Davidson LA, Goldsby JS, Hunt CL, Steinmeyer SH, Menon R, Suchodolski JS, Jayaraman A, Alaniz RC. The microbiota-derived metabolite indole decreases mucosal inflammation and injury in a murine model of NSAID enteropathy. Gut Microbes. 0. PMID 27007819 DOI: 10.1080/19490976.2016.1156827  0.44
2015 Guard BC, Barr JW, Reddivari L, Klemashevich C, Jayaraman A, Steiner JM, Vanamala J, Suchodolski JS. Characterization of microbial dysbiosis and metabolomic changes in dogs with acute diarrhea. Plos One. 10: e0127259. PMID 26000959 DOI: 10.1371/journal.pone.0127259  0.36
2014 Sridharan GV, Choi K, Klemashevich C, Wu C, Prabakaran D, Pan LB, Steinmeyer S, Mueller C, Yousofshahi M, Alaniz RC, Lee K, Jayaraman A. Prediction and quantification of bioactive microbiota metabolites in the mouse gut. Nature Communications. 5: 5492. PMID 25411059 DOI: 10.1038/ncomms6492  0.64
2014 Pasupuleti S, Sule N, Cohn WB, MacKenzie DS, Jayaraman A, Manson MD. Chemotaxis of Escherichia coli to norepinephrine (NE) requires conversion of NE to 3,4-dihydroxymandelic acid. Journal of Bacteriology. 196: 3992-4000. PMID 25182492 DOI: 10.1128/JB.02065-14  0.64
2014 Wang H, Kim J, Jayaraman A, Han A. Microfluidic geometric metering-based multi-reagent mixture generator for robust live cell screening array. Biomedical Microdevices. 16: 887-96. PMID 25112181 DOI: 10.1007/s10544-014-9893-x  0.64
2014 Choi K, Ghaddar B, Moya C, Shi H, Sridharan GV, Lee K, Jayaraman A. Analysis of transcription factor network underlying 3T3-L1 adipocyte differentiation. Plos One. 9: e100177. PMID 25075860 DOI: 10.1371/journal.pone.0100177  0.64
2014 Zhang M, Yang F, Pasupuleti S, Oh JK, Kohli N, Lee IS, Perez K, Verkhoturov SV, Schweikert EA, Jayaraman A, Cisneros-Zevallos L, Akbulut M. Preventing adhesion of Escherichia coli O157:H7 and Salmonella Typhimurium LT2 on tomato surfaces via ultrathin polyethylene glycol film. International Journal of Food Microbiology. 185: 73-81. PMID 24935688 DOI: 10.1016/j.ijfoodmicro.2014.05.019  0.64
2014 Klemashevich C, Wu C, Howsmon D, Alaniz RC, Lee K, Jayaraman A. Rational identification of diet-derived postbiotics for improving intestinal microbiota function. Current Opinion in Biotechnology. 26: 85-90. PMID 24679263 DOI: 10.1016/j.copbio.2013.10.006  0.64
2014 Jin UH, Lee SO, Sridharan G, Lee K, Davidson LA, Jayaraman A, Chapkin RS, Alaniz R, Safe S. Microbiome-derived tryptophan metabolites and their aryl hydrocarbon receptor-dependent agonist and antagonist activities. Molecular Pharmacology. 85: 777-88. PMID 24563545 DOI: 10.1124/mol.113.091165  0.64
2013 Huang JH, Kim J, Ding Y, Jayaraman A, Ugaz VM. Embedding synthetic microvascular networks in poly(lactic acid) substrates with rounded cross-sections for cell culture applications. Plos One. 8: e73188. PMID 24023829 DOI: 10.1371/journal.pone.0073188  0.64
2013 Longsine-Parker W, Wang H, Koo C, Kim J, Kim B, Jayaraman A, Han A. Microfluidic electro-sonoporation: a multi-modal cell poration methodology through simultaneous application of electric field and ultrasonic wave. Lab On a Chip. 13: 2144-52. PMID 23615834 DOI: 10.1039/c3lc40877a  0.64
2013 Manteiga S, Choi K, Jayaraman A, Lee K. Systems biology of adipose tissue metabolism: regulation of growth, signaling and inflammation. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 425-47. PMID 23408581 DOI: 10.1002/wsbm.1213  0.64
2012 Bansal T, Kim DN, Slininger T, Wood TK, Jayaraman A. Human intestinal epithelial cell-derived molecule(s) increase enterohemorrhagic Escherichia coli virulence. Fems Immunology and Medical Microbiology. 66: 399-410. PMID 23163871 DOI: 10.1111/1574-695X.12004  0.64
2012 Huang JH, Jayaraman A, Ugaz VM. Enzymatic sculpting of nanoscale and microscale surface topographies. Angewandte Chemie (International Ed. in English). 51: 9619-23. PMID 22926958 DOI: 10.1002/anie.201204600  0.64
2012 Newton BW, Russell WK, Russell DH, Ramaiah SK, Jayaraman A. Proteomic methods for biomarker discovery in a rat model of alcohol steatosis. Methods in Molecular Biology (Clifton, N.J.). 909: 259-77. PMID 22903721 DOI: 10.1007/978-1-61779-959-4_17  0.64
2012 Kim J, Taylor D, Agrawal N, Wang H, Kim H, Han A, Rege K, Jayaraman A. A programmable microfluidic cell array for combinatorial drug screening. Lab On a Chip. 12: 1813-22. PMID 22456798 DOI: 10.1039/c2lc21202a  0.64
2012 Sheng L, Pu M, Hegde M, Zhang Y, Jayaraman A, Wood TK. Interkingdom adenosine signal reduces Pseudomonas aeruginosa pathogenicity. Microbial Biotechnology. 5: 560-72. PMID 22414222 DOI: 10.1111/j.1751-7915.2012.00338.x  0.64
2012 Kim J, Hegde M, Kim SH, Wood TK, Jayaraman A. A microfluidic device for high throughput bacterial biofilm studies. Lab On a Chip. 12: 1157-63. PMID 22318368 DOI: 10.1039/c2lc20800h  0.64
2012 Hong SH, Hegde M, Kim J, Wang X, Jayaraman A, Wood TK. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nature Communications. 3: 613. PMID 22215088 DOI: 10.1038/ncomms1616  0.64
2011 Taylor DJ, Parsons CE, Han H, Jayaraman A, Rege K. Parallel screening of FDA-approved antineoplastic drugs for identifying sensitizers of TRAIL-induced apoptosis in cancer cells. Bmc Cancer. 11: 470. PMID 22044796 DOI: 10.1186/1471-2407-11-470  0.64
2011 Newton BW, Cologna SM, Moya C, Russell DH, Russell WK, Jayaraman A. Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement. Journal of Proteome Research. 10: 4692-702. PMID 21815628 DOI: 10.1021/pr200491h  0.64
2011 Vikram A, Jesudhasan PR, Jayaprakasha GK, Pillai SD, Jayaraman A, Patil BS. Citrus flavonoid represses Salmonella pathogenicity island 1 and motility in S. Typhimurium LT2. International Journal of Food Microbiology. 145: 28-36. PMID 21168230 DOI: 10.1016/j.ijfoodmicro.2010.11.013  0.64
2011 Hegde M, Englert DL, Schrock S, Cohn WB, Vogt C, Wood TK, Manson MD, Jayaraman A. Chemotaxis to the quorum-sensing signal AI-2 requires the Tsr chemoreceptor and the periplasmic LsrB AI-2-binding protein. Journal of Bacteriology. 193: 768-73. PMID 21097621 DOI: 10.1128/JB.01196-10  0.64
2010 Huang Z, Moya C, Jayaraman A, Hahn J. Using the Tet-On system to develop a procedure for extracting transcription factor activation dynamics. Molecular Biosystems. 6: 1883-9. PMID 20552111 DOI: 10.1039/c003229h  0.52
2010 Englert DL, Manson MD, Jayaraman A. Investigation of bacterial chemotaxis in flow-based microfluidic devices. Nature Protocols. 5: 864-72. PMID 20431532 DOI: 10.1038/nprot.2010.18  0.64
2010 Kim J, Hegde M, Jayaraman A. Microfluidic co-culture of epithelial cells and bacteria for investigating soluble signal-mediated interactions. Journal of Visualized Experiments : Jove. PMID 20407418 DOI: 10.3791/1749  0.36
2010 Englert DL, Manson MD, Jayaraman A. A microfluidic device for quantifying bacterial chemotaxis in stable concentration gradients. Journal of Visualized Experiments : Jove. PMID 20404797 DOI: 10.3791/1779  0.64
2010 Englert DL, Adase CA, Jayaraman A, Manson MD. Repellent taxis in response to nickel ion requires neither Ni2+ transport nor the periplasmic NikA binding protein. Journal of Bacteriology. 192: 2633-7. PMID 20233931 DOI: 10.1128/JB.00854-09  0.64
2010 Kim J, Hegde M, Jayaraman A. Co-culture of epithelial cells and bacteria for investigating host-pathogen interactions. Lab On a Chip. 10: 43-50. PMID 20024049 DOI: 10.1039/b911367c  0.36
2010 Bansal T, Alaniz RC, Wood TK, Jayaraman A. The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation. Proceedings of the National Academy of Sciences of the United States of America. 107: 228-33. PMID 19966295 DOI: 10.1073/pnas.0906112107  0.64
2009 Xie S, Moya C, Bilgin B, Jayaraman A, Walton SP. Emerging affinity-based techniques in proteomics. Expert Review of Proteomics. 6: 573-83. PMID 19811078 DOI: 10.1586/epr.09.74  0.52
2009 Englert DL, Jayaraman A, Manson MD. Microfluidic techniques for the analysis of bacterial chemotaxis. Methods in Molecular Biology (Clifton, N.J.). 571: 1-23. PMID 19763956 DOI: 10.1007/978-1-60761-198-1_1  0.64
2009 Newton BW, Russell WK, Russell DH, Ramaiah SK, Jayaraman A. Liver proteome analysis in a rodent model of alcoholic steatosis. Journal of Proteome Research. 8: 1663-71. PMID 19714808 DOI: 10.1021/pr800905w  0.64
2009 Wang S, Chen PC, Berthiaume F, Toner M, Jayaraman A, Yarmush ML. Dynamic effect of heat shock pretreatment on apoptotic responses to TNF-alpha in liver cells. Journal of Biomechanical Engineering. 131: 071003. PMID 19640128 DOI: 10.1115/1.3118768  0.64
2009 Hegde M, Wood TK, Jayaraman A. The neuroendocrine hormone norepinephrine increases Pseudomonas aeruginosa PA14 virulence through the las quorum-sensing pathway. Applied Microbiology and Biotechnology. 84: 763-76. PMID 19517106 DOI: 10.1007/s00253-009-2045-1  0.6
2009 Englert DL, Manson MD, Jayaraman A. Flow-based microfluidic device for quantifying bacterial chemotaxis in stable, competing gradients. Applied and Environmental Microbiology. 75: 4557-64. PMID 19411425 DOI: 10.1128/AEM.02952-08  0.64
2009 Janakiraman V, Englert D, Jayaraman A, Baskaran H. Modeling growth and quorum sensing in biofilms grown in microfluidic chambers. Annals of Biomedical Engineering. 37: 1206-16. PMID 19291402 DOI: 10.1007/s10439-009-9671-8  0.32
2009 Lai N, Jayaraman A, Lee K. Enhanced proliferation of human umbilical vein endothelial cells and differentiation of 3T3-L1 adipocytes in coculture. Tissue Engineering. Part A. 15: 1053-61. PMID 18767968 DOI: 10.1089/ten.tea.2008.0101  0.64
2009 Jayaraman A, Maguire T, Vemula M, Kwon DW, Vannucci M, Berthiaume F, Yarmush ML. Gene Expression Profiling of Long-Term Changes in Rat Liver Following Burn Injury Journal of Surgical Research. 152: 3-17.e2. PMID 18755477 DOI: 10.1016/j.jss.2007.05.025  0.64
2008 Banerjee A, Russell WK, Jayaraman A, Ramaiah SK. Identification of proteins to predict the molecular basis for the observed gender susceptibility in a rat model of alcoholic steatohepatitis by 2-D gel proteomics. Proteomics. 8: 4327-37. PMID 18924223 DOI: 10.1002/pmic.200700368  0.36
2008 Jayaraman A, Wood TK. Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease. Annual Review of Biomedical Engineering. 10: 145-67. PMID 18647113 DOI: 10.1146/annurev.bioeng.10.061807.160536  0.6
2008 Huang Z, Senocak F, Jayaraman A, Hahn J. Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data. Bmc Systems Biology. 2: 64. PMID 18637177 DOI: 10.1186/1752-0509-2-64  0.52
2008 Lee J, Zhang XS, Hegde M, Bentley WE, Jayaraman A, Wood TK. Indole cell signaling occurs primarily at low temperatures in Escherichia coli. The Isme Journal. 2: 1007-23. PMID 18528414 DOI: 10.1038/ismej.2008.54  0.6
2008 Soni KA, Jesudhasan PR, Cepeda M, Williams B, Hume M, Russell WK, Jayaraman A, Pillai SD. Autoinducer AI-2 is involved in regulating a variety of cellular processes in Salmonella Typhimurium. Foodborne Pathogens and Disease. 5: 147-53. PMID 18361683 DOI: 10.1089/fpd.2007.0050  0.64
2008 Bansal T, Jesudhasan P, Pillai S, Wood TK, Jayaraman A. Temporal regulation of enterohemorrhagic Escherichia coli virulence mediated by autoinducer-2. Applied Microbiology and Biotechnology. 78: 811-9. PMID 18256823 DOI: 10.1007/s00253-008-1359-8  0.64
2007 Senocak FS, Si Y, Moya C, Russell WK, Russell DH, Lee K, Jayaraman A. Effect of uncoupling protein-1 expression on 3T3-L1 adipocyte gene expression. Febs Letters. 581: 5865-71. PMID 18061577 DOI: 10.1016/j.febslet.2007.11.064  0.64
2007 Soni K, Jesudhasan P, Cepeda M, Williams B, Hume M, Russell WK, Jayaraman A, Pillai SD. Proteomic analysis to identify the role of LuxS/AI-2 mediated protein expression in Escherichia coli O157:H7. Foodborne Pathogens and Disease. 4: 463-71. PMID 18041955 DOI: 10.1089/fpd.2007.0034  0.64
2007 Bansal T, Englert D, Lee J, Hegde M, Wood TK, Jayaraman A. Differential effects of epinephrine, norepinephrine, and indole on Escherichia coli O157:H7 chemotaxis, colonization, and gene expression. Infection and Immunity. 75: 4597-607. PMID 17591798 DOI: 10.1128/IAI.00630-07  0.64
2007 Lee J, Jayaraman A, Wood TK. Indole is an inter-species biofilm signal mediated by SdiA. Bmc Microbiology. 7: 42. PMID 17511876 DOI: 10.1186/1471-2180-7-42  0.6
2007 Lee J, Bansal T, Jayaraman A, Bentley WE, Wood TK. Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin. Applied and Environmental Microbiology. 73: 4100-9. PMID 17483266 DOI: 10.1128/AEM.00360-07  0.64
2007 Si Y, Palani S, Jayaraman A, Lee K. Effects of forced uncoupling protein 1 expression in 3T3-L1 cells on mitochondrial function and lipid metabolism. Journal of Lipid Research. 48: 826-36. PMID 17202129 DOI: 10.1194/jlr.M600343-JLR200  0.64
2007 King KR, Wang S, Irimia D, Jayaraman A, Toner M, Yarmush ML. A high-throughput microfluidic real-time gene expression living cell array. Lab On a Chip. 7: 77-85. PMID 17180208 DOI: 10.1039/b612516f  0.64
2006 Singh A, Jayaraman A, Hahn J. Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes. Biotechnology and Bioengineering. 95: 850-62. PMID 16752369 DOI: 10.1002/bit.21026  0.52
2005 Wieder KJ, King KR, Thompson DM, Zia C, Yarmush ML, Jayaraman A. Optimization of reporter cells for expression profiling in a microfluidic device. Biomedical Microdevices. 7: 213-22. PMID 16133809 DOI: 10.1007/s10544-005-3028-3  0.64
2005 Duan X, Yarmush D, Berthiaume F, Jayaraman A, Yarmush ML. Immunodepletion of albumin for two-dimensional gel detection of new mouse acute-phase protein and other plasma proteins. Proteomics. 5: 3991-4000. PMID 16130172 DOI: 10.1002/pmic.200401257  0.64
2005 Jayaraman A, Roberts KA, Yoon J, Yarmush DM, Duan X, Lee K, Yarmush ML. Identification of neutrophil gelatinase-associated lipocalin (NGAL) as a discriminatory marker of the hepatocyte-secreted protein response to IL-1beta: a proteomic analysis. Biotechnology and Bioengineering. 91: 502-15. PMID 15918168 DOI: 10.1002/bit.20535  0.64
2005 Jayaraman A, Yarmush ML, Roth CM. Evaluation of an in vitro model of hepatic inflammatory response by gene expression profiling. Tissue Engineering. 11: 50-63. PMID 15738661 DOI: 10.1089/ten.2005.11.50  0.64
2004 Duan X, Yarmush DM, Berthiaume F, Jayaraman A, Yarmush ML. A mouse serum two-dimensional gel map: application to profiling burn injury and infection. Electrophoresis. 25: 3055-65. PMID 15349948 DOI: 10.1002/elps.200406039  0.64
2004 Thompson DM, King KR, Wieder KJ, Toner M, Yarmush ML, Jayaraman A. Dynamic gene expression profiling using a microfabricated living cell array. Analytical Chemistry. 76: 4098-103. PMID 15253648 DOI: 10.1021/ac0354241  0.64
2004 Duan X, Yarmush DM, Jayaraman A, Yarmush ML. Dispensable role for interferon-gamma in the burn-induced acute phase response: a proteomic analysis. Proteomics. 4: 1830-9. PMID 15174149 DOI: 10.1002/pmic.200300696  0.64
2002 Yarmush ML, Jayaraman A. Advances in proteomic technologies. Annual Review of Biomedical Engineering. 4: 349-73. PMID 12117762 DOI: 10.1146/annurev.bioeng.4.020702.153443  0.64
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