Dean R. Madden - Publications

Affiliations: 
Biochemistry Dartmouth College, Hanover, NH, United States 
Area:
Biochemistry, General Biophysics, Microbiology Biology

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Vasylieva N, Kitamura S, Dong J, Barnych B, Hvorecny KL, Madden DR, Gee SJ, Wolan DW, Morisseau C, Hammock BD. Nanobody-based binding assay for the discovery of potent inhibitors of CFTR inhibitory factor (Cif). Analytica Chimica Acta. 1057: 106-113. PMID 30832908 DOI: 10.1016/j.aca.2018.12.060  0.56
2018 Zhao Y, Cushing PR, Smithson DC, Pellegrini M, Pletnev AA, Al-Ayyoubi S, Grassetti AV, Gerber SA, Guy RK, Madden DR. Correction: Cysteine modification reveals an allosteric inhibitory site on the CAL PDZ domain. Bioscience Reports. PMID 29871975 DOI: 10.1042/BSR20180231_COR  0.72
2018 Amacher JF, Zhong F, Lisi GP, Zhu MQ, Alden SL, Hoke KR, Madden DR, Pletneva EV. Correction to "A Compact Structure of Cytochrome c Trapped in a Lysine-Ligated State: Loop Refolding and Functional Implications of a Conformational Switch". Journal of the American Chemical Society. PMID 29553265 DOI: 10.1021/jacs.8b02708  0.72
2018 Zhao Y, Cushing PR, Smithson DC, Pellegrini M, Pletnev AA, Al-Ayyoubi S, Grassetti AV, Gerber SA, Guy RK, Madden DR. Cysteine modification reveals an allosteric inhibitory site on the CAL PDZ domain. Bioscience Reports. PMID 29472314 DOI: 10.1042/BSR20180231  0.72
2017 Hvorecny KL, Dolben E, Moreau-Marquis S, Hampton TH, Shabaneh TB, Flitter BA, Bahl CD, Bomberger JM, Levy BD, Stanton BA, Hogan DA, Madden DR. An epoxide hydrolase secreted by Pseudomonas aeruginosa decreases mucociliary transport and hinders bacterial clearance from the lung. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00383.2017. PMID 28982736 DOI: 10.1152/ajplung.00383.2017  0.92
2017 Seisel Q, Rädisch M, Gill NP, Madden DR, Boisguerin P. Optimization of the process of inverted peptides (PIPE(PLUS)) to screen PDZ domain ligands. Bioorganic & Medicinal Chemistry Letters. PMID 28549735 DOI: 10.1016/j.bmcl.2017.05.045  0.44
2017 Hvorecny KL, Bahl CD, Kitamura S, Lee KS, Hammock BD, Morisseau C, Madden DR. Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase. Structure (London, England : 1993). PMID 28392259 DOI: 10.1016/j.str.2017.03.002  0.92
2017 Bertrand CA, Mitra S, Mishra SK, Wang X, Zhao Y, Pilewski JM, Madden DR, Frizzell RA. The CFTR trafficking mutation F508del inhibits the constitutive activity of SLC26A9. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00178.2016. PMID 28360110 DOI: 10.1152/ajplung.00178.2016  0.4
2017 Bahl CD, St Laurent JD, Karthikeyan RS, Priya JL, Prajna L, Zegans ME, Madden DR. The cif Virulence Factor Gene Is Present in Isolates From Patients With Pseudomonas aeruginosa Keratitis. Cornea. PMID 28079684 DOI: 10.1097/ICO.0000000000001132  0.92
2016 Flitter BA, Hvorecny KL, Ono E, Eddens T, Yang J, Kwak DH, Bahl CD, Hampton TH, Morisseau C, Hammock BD, Liu X, Lee JS, Kolls JK, Levy BD, Madden DR, et al. Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators. Proceedings of the National Academy of Sciences of the United States of America. PMID 27980032 DOI: 10.1073/pnas.1610242114  0.92
2016 Clausen RP, Mohr AØ, Riise E, Jensen AA, Gill A, Madden DR, Kastrup JS, Skottrup PD. A parallel panning scheme used for selection of a GluA4-specific Fab targeting the ligand-binding domain. International Journal of Biological Macromolecules. PMID 27402461 DOI: 10.1016/j.ijbiomac.2016.07.026  1
2016 Kitamura S, Hvorecny KL, Niu J, Hammock BD, Madden DR, Morisseau C. Rational design of potent and selective inhibitors of an epoxide hydrolase virulence factor from Pseudomonas aeruginosa. Journal of Medicinal Chemistry. PMID 27120257 DOI: 10.1021/acs.jmedchem.6b00173  1
2016 Bahl CD, Hvorecny KL, Morisseau C, Gerber SA, Madden DR. Visualizing the Mechanism of Epoxide Hydrolysis by the Bacterial Virulence Enzyme Cif. Biochemistry. 55: 788-97. PMID 26752215 DOI: 10.1021/acs.biochem.5b01229  1
2015 Bahl CD, Hvorecny KL, Bomberger JM, Stanton BA, Hammock BD, Morisseau C, Madden DR. Inhibiting an epoxide hydrolase virulence factor from Pseudomonas aeruginosa protects CFTR. Angewandte Chemie (International Ed. in English). PMID 26136396 DOI: 10.1002/anie.201503983  1
2015 Amacher JF, Zhong F, Lisi GP, Zhu MQ, Alden SL, Hoke KR, Madden DR, Pletneva EV. A Compact Structure of Cytochrome c Trapped in a Lysine-Ligated State: Loop Refolding and Functional Implications of a Conformational Switch. Journal of the American Chemical Society. PMID 26038984 DOI: 10.1021/jacs.5b01493  0.72
2015 Qian Z, Xu X, Amacher JF, Madden DR, Cormet-Boyaka E, Pei D. Intracellular Delivery of Peptidyl Ligands by Reversible Cyclization: Discovery of a PDZ Domain Inhibitor that Rescues CFTR Activity. Angewandte Chemie (International Ed. in English). 54: 5874-8. PMID 25785567 DOI: 10.1002/anie.201411594  1
2014 Amacher JF, Zhao R, Spaller MR, Madden DR. Chemically modified peptide scaffolds target the CFTR-associated ligand PDZ domain. Plos One. 9: e103650. PMID 25136860 DOI: 10.1371/journal.pone.0103650  1
2014 Koeppen K, Coutermarsh BA, Madden DR, Stanton BA. Serum- and glucocorticoid-induced protein kinase 1 (SGK1) increases the cystic fibrosis transmembrane conductance regulator (CFTR) in airway epithelial cells by phosphorylating Shank2E protein. The Journal of Biological Chemistry. 289: 17142-50. PMID 24811177 DOI: 10.1074/jbc.M114.555599  0.32
2014 Bahl CD, Hvorecny KL, Bridges AA, Ballok AE, Bomberger JM, Cady KC, O'Toole GA, Madden DR. Signature motifs identify an Acinetobacter Cif virulence factor with epoxide hydrolase activity. The Journal of Biological Chemistry. 289: 7460-9. PMID 24474692 DOI: 10.1074/jbc.M113.518092  1
2014 Amacher JF, Cushing PR, Brooks L, Boisguerin P, Madden DR. Stereochemical preferences modulate affinity and selectivity among five PDZ domains that bind CFTR: comparative structural and sequence analyses. Structure (London, England : 1993). 22: 82-93. PMID 24210758 DOI: 10.1016/j.str.2013.09.019  1
2013 Baranovic J, Ramanujan CS, Kasai N, Midgett CR, Madden DR, Torimitsu K, Ryan JF. Reconstitution of homomeric GluA2(flop) receptors in supported lipid membranes: functional and structural properties. The Journal of Biological Chemistry. 288: 8647-57. PMID 23382380 DOI: 10.1074/jbc.M112.422105  1
2013 Amacher JF, Cushing PR, Bahl CD, Beck T, Madden DR. Stereochemical determinants of C-terminal specificity in PDZ peptide-binding domains: a novel contribution of the carboxylate-binding loop. The Journal of Biological Chemistry. 288: 5114-26. PMID 23243314 DOI: 10.1074/jbc.M112.401588  1
2012 Ballok AE, Bahl CD, Dolben EL, Lindsay AK, St Laurent JD, Hogan DA, Madden DR, O'Toole GA. Epoxide-mediated CifR repression of cif gene expression utilizes two binding sites in Pseudomonas aeruginosa. Journal of Bacteriology. 194: 5315-24. PMID 22843844 DOI: 10.1128/JB.00984-12  1
2012 Kundu R, Cushing PR, Popp BV, Zhao Y, Madden DR, Ball ZT. Hybrid organic-inorganic inhibitors of a PDZ interaction that regulates the endocytic fate of CFTR. Angewandte Chemie (International Ed. in English). 51: 7217-20. PMID 22700245 DOI: 10.1002/anie.201202291  1
2012 Kettenbach AN, Wang T, Faherty BK, Madden DR, Knapp S, Bailey-Kellogg C, Gerber SA. Rapid determination of multiple linear kinase substrate motifs by mass spectrometry. Chemistry & Biology. 19: 608-18. PMID 22633412 DOI: 10.1016/j.chembiol.2012.04.011  1
2012 Roberts KE, Cushing PR, Boisguerin P, Madden DR, Donald BR. Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity. Plos Computational Biology. 8: e1002477. PMID 22532795 DOI: 10.1371/journal.pcbi.1002477  1
2012 Cihil KM, Ellinger P, Fellows A, Stolz DB, Madden DR, Swiatecka-Urban A. Disabled-2 protein facilitates assembly polypeptide-2-independent recruitment of cystic fibrosis transmembrane conductance regulator to endocytic vesicles in polarized human airway epithelial cells. The Journal of Biological Chemistry. 287: 15087-99. PMID 22399289 DOI: 10.1074/jbc.M112.341875  1
2012 Midgett CR, Gill A, Madden DR. Domain architecture of a calcium-permeable AMPA receptor in a ligand-free conformation. Frontiers in Molecular Neuroscience. 4: 56. PMID 22232575 DOI: 10.3389/fnmol.2011.00056  1
2012 Bahl CD, Madden DR. Pseudomonas aeruginosa Cif defines a distinct class of α/β epoxide hydrolases utilizing a His/Tyr ring-opening pair. Protein and Peptide Letters. 19: 186-93. PMID 21933119 DOI: 10.2174/092986612799080392  1
2011 Park W, Midgett CR, Madden DR, Chirikjian GS. A Stochastic Kinematic Model of Class Averaging in Single-Particle Electron Microscopy. The International Journal of Robotics Research. 30: 730-754. PMID 21660125 DOI: 10.1177/0278364911400220  1
2011 Amacher JF, Cushing PR, Weiner JA, Madden DR. Crystallization and preliminary diffraction analysis of the CAL PDZ domain in complex with a selective peptide inhibitor. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 600-3. PMID 21543871 DOI: 10.1107/S1744309111009985  1
2011 Gill A, Scanlon TC, Osipovitch DC, Madden DR, Griswold KE. Crystal structure of a charge engineered human lysozyme having enhanced bactericidal activity. Plos One. 6: e16788. PMID 21408218 DOI: 10.1371/journal.pone.0016788  1
2011 Navarro MV, Newell PD, Krasteva PV, Chatterjee D, Madden DR, O'Toole GA, Sondermann H. Structural basis for c-di-GMP-mediated inside-out signaling controlling periplasmic proteolysis. Plos Biology. 9: e1000588. PMID 21304926 DOI: 10.1371/journal.pbio.1000588  1
2010 Cushing PR, Vouilleme L, Pellegrini M, Boisguerin P, Madden DR. A stabilizing influence: CAL PDZ inhibition extends the half-life of ΔF508-CFTR. Angewandte Chemie (International Ed. in English). 49: 9907-11. PMID 21105033 DOI: 10.1002/anie.201005585  1
2010 Vouilleme L, Cushing PR, Volkmer R, Madden DR, Boisguerin P. Engineering peptide inhibitors to overcome PDZ binding promiscuity. Angewandte Chemie (International Ed. in English). 49: 9912-6. PMID 21105032 DOI: 10.1002/anie.201005575  1
2010 Park W, Madden DR, Rockmore DN, Chirikjian GS. Deblurring of Class-Averaged Images in Single-Particle Electron Microscopy. Inverse Problems. 26: 3500521-35005229. PMID 20221416 DOI: 10.1088/0266-5611/26/3/035002  1
2010 Bahl CD, Morisseau C, Bomberger JM, Stanton BA, Hammock BD, O'Toole GA, Madden DR. Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence factor. Journal of Bacteriology. 192: 1785-95. PMID 20118260 DOI: 10.1128/JB.01348-09  1
2010 Birdsey-Benson A, Gill A, Henderson LP, Madden DR. Enhanced efficacy without further cleft closure: reevaluating twist as a source of agonist efficacy in AMPA receptors. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1463-70. PMID 20107073 DOI: 10.1523/JNEUROSCI.4558-09.2010  1
2010 Bahl CD, MacEachran DP, O'Toole GA, Madden DR. Purification, crystallization and preliminary X-ray diffraction analysis of Cif, a virulence factor secreted by Pseudomonas aeruginosa. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 26-8. PMID 20057063 DOI: 10.1107/S1744309109047599  1
2008 Gill A, Birdsey-Benson A, Jones BL, Henderson LP, Madden DR. Correlating AMPA receptor activation and cleft closure across subunits: crystal structures of the GluR4 ligand-binding domain in complex with full and partial agonists. Biochemistry. 47: 13831-41. PMID 19102704 DOI: 10.1021/bi8013196  1
2008 Gill A, Madden DR. Purification and crystallization of a non-GluR2 AMPA-receptor ligand-binding domain: a case of cryo-incompatibility addressed by room-temperature data collection. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 64: 831-5. PMID 18765917 DOI: 10.1107/S1744309108025426  1
2008 Cushing PR, Fellows A, Villone D, Boisguérin P, Madden DR. The relative binding affinities of PDZ partners for CFTR: a biochemical basis for efficient endocytic recycling. Biochemistry. 47: 10084-98. PMID 18754678 DOI: 10.1021/bi8003928  1
2008 Midgett CR, Madden DR. The quaternary structure of a calcium-permeable AMPA receptor: conservation of shape and symmetry across functionally distinct subunit assemblies. Journal of Molecular Biology. 382: 578-84. PMID 18656486 DOI: 10.1016/j.jmb.2008.07.021  1
2008 Sevvana M, Vijayan V, Zweckstetter M, Reinelt S, Madden DR, Herbst-Irmer R, Sheldrick GM, Bott M, Griesinger C, Becker S. A ligand-induced switch in the periplasmic domain of sensor histidine kinase CitA. Journal of Molecular Biology. 377: 512-23. PMID 18258261 DOI: 10.1016/j.jmb.2008.01.024  1
2007 Midgett CR, Madden DR. Breaking the bottleneck: eukaryotic membrane protein expression for high-resolution structural studies. Journal of Structural Biology. 160: 265-74. PMID 17702603 DOI: 10.1016/j.jsb.2007.07.001  1
2007 Wolde M, Fellows A, Cheng J, Kivenson A, Coutermarsh B, Talebian L, Karlson K, Piserchio A, Mierke DF, Stanton BA, Guggino WB, Madden DR. Targeting CAL as a negative regulator of DeltaF508-CFTR cell-surface expression: an RNA interference and structure-based mutagenetic approach. The Journal of Biological Chemistry. 282: 8099-109. PMID 17158866 DOI: 10.1074/jbc.M611049200  1
2005 Piserchio A, Fellows A, Madden DR, Mierke DF. Association of the cystic fibrosis transmembrane regulator with CAL: structural features and molecular dynamics. Biochemistry. 44: 16158-66. PMID 16331976 DOI: 10.1021/bi0516475  1
2004 Madden DR, Cheng Q, Thiran S, Rajan S, Rigo F, Keinänen K, Reinelt S, Zimmermann H, Jayaraman V. Stereochemistry of glutamate receptor agonist efficacy: engineering a dual-specificity AMPA/kainate receptor. Biochemistry. 43: 15838-44. PMID 15595838 DOI: 10.1021/bi048447y  1
2003 Pasternack A, Coleman SK, Féthière J, Madden DR, LeCaer JP, Rossier J, Pasternack M, Keinänen K. Characterization of the functional role of the N-glycans in the AMPA receptor ligand-binding domain. Journal of Neurochemistry. 84: 1184-92. PMID 12603841 DOI: 10.1046/j.1471-4159.2003.01611.x  1
1994 Garboczi DN, Madden DR, Wiley DC. Five viral peptide-HLA-A2 co-crystals. Simultaneous space group determination and X-ray data collection. Journal of Molecular Biology. 239: 581-7. PMID 7516439 DOI: 10.1006/jmbi.1994.1398  1
1993 Guo HC, Madden DR, Silver ML, Jardetzky TS, Gorga JC, Strominger JL, Wiley DC. Comparison of the P2 specificity pocket in three human histocompatibility antigens: HLA-A*6801, HLA-A*0201, and HLA-B*2705. Proceedings of the National Academy of Sciences of the United States of America. 90: 8053-7. PMID 8367462  1
1993 Madden DR, Garboczi DN, Wiley DC. The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2. Cell. 75: 693-708. PMID 7694806 DOI: 10.1016/0092-8674(93)90490-H  1
1992 Gorga JC, Madden DR, Prendergast JK, Wiley DC, Strominger JL. Crystallization and preliminary X-ray diffraction studies of the human major histocompatibility antigen HLA-B27 Proteins: Structure, Function and Genetics. 12: 87-90. PMID 1553383  1
1992 Madden DR, Gorga JC, Strominger JL, Wiley DC. The three-dimensional structure of HLA-B27 at 2.1 A resolution suggests a general mechanism for tight peptide binding to MHC. Cell. 70: 1035-48. PMID 1525820 DOI: 10.1016/0092-8674(92)90252-8  1
1991 Jardetzky TS, Lane WS, Robinson RA, Madden DR, Wiley DC. Identification of self peptides bound to purified HLA-B27. Nature. 353: 326-9. PMID 1922338 DOI: 10.1038/353326a0  1
1991 Madden DR, Gorga JC, Strominger JL, Wiley DC. The structure of HLA-B27 reveals nonamer self-peptides bound in an extended conformation Nature. 353: 321-325. PMID 1922337 DOI: 10.1038/353321a0  1
1989 Madden DR, Saper MA, Garrett TP, Bjorkman PJ, Strominger JL, Wiley DC. Comparison of orthorhombic and monoclinic crystal structures of HLA-A2. Cold Spring Harbor Symposia On Quantitative Biology. 54: 353-9. PMID 2639758  1
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