| Year |
Citation |
Score |
| 2020 |
Canestrari JG, Lasek-Nesselquist E, Upadhyay A, Rofaeil M, Champion MM, Wade JT, Derbyshire KM, Gray TA. Polycysteine-encoding leaderless short ORFs function as cysteine-responsive attenuators of operonic gene expression in mycobacteria. Molecular Microbiology. PMID 32181921 DOI: 10.1111/Mmi.14498 |
0.354 |
|
| 2020 |
Clark RR, Gray TA, Derbyshire KM. Quantifying and Characterizing Distributive Conjugal Transfer in Mycobacterium smegmatis. Methods in Molecular Biology (Clifton, N.J.). 2075: 123-134. PMID 31584159 DOI: 10.1007/978-1-4939-9877-7_9 |
0.36 |
|
| 2019 |
Li Y, Sharma MR, Koripella RK, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK. Reply to Tobiasson et al.: Zinc depletion is a specific signal for induction of ribosome hibernation in mycobacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 30683729 DOI: 10.1073/Pnas.1821103116 |
0.307 |
|
| 2018 |
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK. Zinc depletion induces ribosome hibernation in mycobacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 30038002 DOI: 10.1073/Pnas.1804555115 |
0.328 |
|
| 2018 |
Clark RR, Judd J, Lasek-Nesselquist E, Montgomery SA, Hoffmann JG, Derbyshire KM, Gray TA. Direct cell-cell contact activates SigM to express the ESX-4 secretion system in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29941598 DOI: 10.1073/Pnas.1804227115 |
0.399 |
|
| 2018 |
Gray TA, Derbyshire KM. Blending genomes: Distributive Conjugal Transfer in Mycobacteria, a sexier form of HGT. Molecular Microbiology. PMID 29669186 DOI: 10.1111/Mmi.13971 |
0.432 |
|
| 2017 |
Judd J, Boucher N, Van Roey E, Gray TA, Derbyshire KM. Application of distributive conjugal DNA transfer in Mycobacterium smegmatis to establish a genome-wide synthetic genetic array. Journal of Bacteriology. PMID 28784812 DOI: 10.1128/Jb.00410-17 |
0.384 |
|
| 2017 |
Yang Y, Thomas J, Li Y, Vilchèze C, Derbyshire KM, Jacobs WR, Ojha AK. Defining a temporal order of genetic requirements for development of mycobacterial biofilms. Molecular Microbiology. PMID 28628249 DOI: 10.1111/Mmi.13734 |
0.342 |
|
| 2016 |
Gray TA, Clark RR, Boucher N, Lapierre P, Smith C, Derbyshire KM. Intercellular communication and conjugation are mediated by ESX secretion systems in mycobacteria. Science (New York, N.Y.). 354: 347-350. PMID 27846571 DOI: 10.1126/Science.Aag0828 |
0.328 |
|
| 2015 |
Shell SS, Wang J, Lapierre P, Mir M, Chase MR, Pyle MM, Gawande R, Ahmad R, Sarracino DA, Ioerger TR, Fortune SM, Derbyshire KM, Wade JT, Gray TA. Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape. Plos Genetics. 11: e1005641. PMID 26536359 DOI: 10.1371/Journal.Pgen.1005641 |
0.348 |
|
| 2014 |
Derbyshire KM, Gray TA. Distributive Conjugal Transfer: New Insights into Horizontal Gene Transfer and Genetic Exchange in Mycobacteria. Microbiology Spectrum. 2: MGM2-0022-2013. PMID 26082110 DOI: 10.1128/Microbiolspec.Mgm2-0022-2013 |
0.39 |
|
| 2013 |
Gray TA, Krywy JA, Harold J, Palumbo MJ, Derbyshire KM. Distributive conjugal transfer in mycobacteria generates progeny with meiotic-like genome-wide mosaicism, allowing mapping of a mating identity locus. Plos Biology. 11: e1001602. PMID 23874149 DOI: 10.1371/Journal.Pbio.1001602 |
0.422 |
|
| 2013 |
Gray TA, Palumbo MJ, Derbyshire KM. Draft Genome Sequence of MKD8, a Conjugal Recipient Mycobacterium smegmatis Strain. Genome Announcements. 1: e0014813. PMID 23618714 DOI: 10.1128/Genomea.00148-13 |
0.313 |
|
| 2012 |
Wirth SE, Krywy JA, Aldridge BB, Fortune SM, Fernandez-Suarez M, Gray TA, Derbyshire KM. Polar assembly and scaffolding proteins of the virulence-associated ESX-1 secretory apparatus in mycobacteria. Molecular Microbiology. 83: 654-64. PMID 22233444 DOI: 10.1111/J.1365-2958.2011.07958.X |
0.334 |
|
| 2011 |
Javid B, Derbyshire KM. Nanotubes: shaking hands, talking, or sharing? Frontiers in Microbiology. 2: 95. PMID 21833333 DOI: 10.3389/Fmicb.2011.00095 |
0.355 |
|
| 2010 |
Nguyen KT, Piastro K, Gray TA, Derbyshire KM. Mycobacterial biofilms facilitate horizontal DNA transfer between strains of Mycobacterium smegmatis. Journal of Bacteriology. 192: 5134-42. PMID 20675473 DOI: 10.1128/Jb.00650-10 |
0.414 |
|
| 2010 |
Callahan B, Nguyen K, Collins A, Valdes K, Caplow M, Crossman DK, Steyn AJ, Eisele L, Derbyshire KM. Conservation of structure and protein-protein interactions mediated by the secreted mycobacterial proteins EsxA, EsxB, and EspA. Journal of Bacteriology. 192: 326-35. PMID 19854905 DOI: 10.1128/Jb.01032-09 |
0.337 |
|
| 2009 |
Nguyen KT, Piastro K, Derbyshire KM. LpqM, a mycobacterial lipoprotein-metalloproteinase, is required for conjugal DNA transfer in Mycobacterium smegmatis. Journal of Bacteriology. 191: 2721-7. PMID 19233923 DOI: 10.1128/Jb.00024-09 |
0.484 |
|
| 2008 |
Coros A, Callahan B, Battaglioli E, Derbyshire KM. The specialized secretory apparatus ESX-1 is essential for DNA transfer in Mycobacterium smegmatis. Molecular Microbiology. 69: 794-808. PMID 18554329 DOI: 10.1111/J.1365-2958.2008.06299.X |
0.46 |
|
| 2008 |
Coros A, DeConno E, Derbyshire KM. IS6110, a Mycobacterium tuberculosis complex-specific insertion sequence, is also present in the genome of Mycobacterium smegmatis, suggestive of lateral gene transfer among mycobacterial species. Journal of Bacteriology. 190: 3408-10. PMID 18326566 DOI: 10.1128/Jb.00009-08 |
0.402 |
|
| 2007 |
Mo Y, Quanquin NM, Vecino WH, Ranganathan UD, Tesfa L, Bourn W, Derbyshire KM, Letvin NL, Jacobs WR, Fennelly GJ. Genetic alteration of Mycobacterium smegmatis to improve mycobacterium-mediated transfer of plasmid DNA into mammalian cells and DNA immunization. Infection and Immunity. 75: 4804-16. PMID 17664267 DOI: 10.1128/Iai.01877-06 |
0.442 |
|
| 2005 |
Wardle SJ, O'Carroll M, Derbyshire KM, Haniford DB. The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. Genes & Development. 19: 2224-35. PMID 16166383 DOI: 10.1101/Gad.1338905 |
0.335 |
|
| 2005 |
Wang J, Karnati PK, Takacs CM, Kowalski JC, Derbyshire KM. Chromosomal DNA transfer in Mycobacterium smegmatis is mechanistically different from classical Hfr chromosomal DNA transfer. Molecular Microbiology. 58: 280-8. PMID 16164565 DOI: 10.1111/J.1365-2958.2005.04824.X |
0.434 |
|
| 2005 |
Twiss E, Coros AM, Tavakoli NP, Derbyshire KM. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Molecular Microbiology. 57: 1593-607. PMID 16135227 DOI: 10.1111/J.1365-2958.2005.04794.X |
0.38 |
|
| 2005 |
Coros AM, Twiss E, Tavakoli NP, Derbyshire KM. Genetic evidence that GTP is required for transposition of IS903 and Tn552 in Escherichia coli. Journal of Bacteriology. 187: 4598-606. PMID 15968071 DOI: 10.1128/Jb.187.13.4598-4606.2005 |
0.357 |
|
| 2004 |
Flint JL, Kowalski JC, Karnati PK, Derbyshire KM. The RD1 virulence locus of Mycobacterium tuberculosis regulates DNA transfer in Mycobacterium smegmatis. Proceedings of the National Academy of Sciences of the United States of America. 101: 12598-603. PMID 15314236 DOI: 10.1073/Pnas.0404892101 |
0.452 |
|
| 2004 |
Wang J, Derbyshire KM. Plasmid DNA transfer in Mycobacterium smegmatis involves novel DNA rearrangements in the recipient, which can be exploited for molecular genetic studies. Molecular Microbiology. 53: 1233-41. PMID 15306024 DOI: 10.1111/J.1365-2958.2004.04201.X |
0.48 |
|
| 2004 |
Swingle B, O'Carroll M, Haniford D, Derbyshire KM. The effect of host-encoded nucleoid proteins on transposition: H-NS influences targeting of both IS903 and Tn10. Molecular Microbiology. 52: 1055-67. PMID 15130124 DOI: 10.1111/J.1365-2958.2004.04051.X |
0.631 |
|
| 2003 |
Curcio MJ, Derbyshire KM. The outs and ins of transposition: from mu to kangaroo. Nature Reviews. Molecular Cell Biology. 4: 865-77. PMID 14682279 DOI: 10.1038/Nrm1241 |
0.344 |
|
| 2003 |
Wang J, Parsons LM, Derbyshire KM. Unconventional conjugal DNA transfer in mycobacteria. Nature Genetics. 34: 80-4. PMID 12669068 DOI: 10.1038/Ng1139 |
0.456 |
|
| 2002 |
Kirby C, Waring A, Griffin TJ, Falkinham JO, Grindley ND, Derbyshire KM. Cryptic plasmids of Mycobacterium avium: Tn552 to the rescue. Molecular Microbiology. 43: 173-86. PMID 11849545 DOI: 10.1046/J.1365-2958.2002.02729.X |
0.46 |
|
| 2001 |
Tavakoli NP, Derbyshire KM. Tipping the balance between replicative and simple transposition. The Embo Journal. 20: 2923-30. PMID 11387225 DOI: 10.1093/Emboj/20.11.2923 |
0.381 |
|
| 2001 |
Hu WY, Thompson W, Lawrence CE, Derbyshire KM. Anatomy of a preferred target site for the bacterial insertion sequence IS903. Journal of Molecular Biology. 306: 403-16. PMID 11178901 DOI: 10.1006/Jmbi.2000.4421 |
0.579 |
|
| 2000 |
Machowski EE, McAdam RA, Derbyshire KM, Mizrahi V. Construction and application of mycobacterial reporter transposons. Gene. 253: 67-75. PMID 10925203 DOI: 10.1016/S0378-1119(00)00238-9 |
0.418 |
|
| 1999 |
Thomson VJ, Bhattacharjee MK, Fine DH, Derbyshire KM, Figurski DH. Direct selection of IS903 transposon insertions by use of a broad-host-range vector: isolation of catalase-deficient mutants of Actinobacillus actinomycetemcomitans. Journal of Bacteriology. 181: 7298-307. PMID 10572134 DOI: 10.1128/Jb.181.23.7298-7307.1999 |
0.417 |
|
| 1999 |
Griffin TJ, Parsons L, Leschziner AE, DeVost J, Derbyshire KM, Grindley ND. In vitro transposition of Tn552: a tool for DNA sequencing and mutagenesis. Nucleic Acids Research. 27: 3859-65. PMID 10481025 DOI: 10.1093/Nar/27.19.3859 |
0.352 |
|
| 1999 |
Tavakoli NP, Derbyshire KM. IS903 transposase mutants that suppress defective inverted repeats. Molecular Microbiology. 31: 1183-95. PMID 10096085 DOI: 10.1046/J.1365-2958.1999.01260.X |
0.332 |
|
| 1998 |
Parsons LM, Jankowski CS, Derbyshire KM. Conjugal transfer of chromosomal DNA in Mycobacterium smegmatis. Molecular Microbiology. 28: 571-82. PMID 9632259 DOI: 10.1046/J.1365-2958.1998.00818.X |
0.451 |
|
| 1998 |
Hu WY, Derbyshire KM. Target choice and orientation preference of the insertion sequence IS903. Journal of Bacteriology. 180: 3039-48. PMID 9620951 DOI: 10.1128/Jb.180.12.3039-3048.1998 |
0.611 |
|
| 1998 |
Tavakoli NP, DeVost J, Derbyshire KM. Defining functional regions of the IS903 transposase. Journal of Molecular Biology. 274: 491-504. PMID 9417930 DOI: 10.1006/Jmbi.1997.1410 |
0.399 |
|
| 1996 |
Derbyshire KM, Grindley ND. Cis preference of the IS903 transposase is mediated by a combination of transposase instability and inefficient translation. Molecular Microbiology. 21: 1261-72. PMID 8898394 DOI: 10.1111/J.1365-2958.1996.Tb02587.X |
0.353 |
|
| 1987 |
Derbyshire KM, Hatfull G, Willetts N. Mobilization of the non-conjugative plasmid RSF1010: a genetic and DNA sequence analysis of the mobilization region. Molecular & General Genetics : Mgg. 206: 161-8. PMID 3033438 DOI: 10.1007/Bf00326552 |
0.348 |
|
| 1987 |
Derbyshire KM, Willetts NS. Mobilization of the non-conjugative plasmid RSF1010: a genetic analysis of its origin of transfer. Molecular & General Genetics : Mgg. 206: 154-60. PMID 3033437 DOI: 10.1007/BF00326551 |
0.356 |
|
| 1986 |
Derbyshire KM, Grindley ND. Replicative and conservative transposition in bacteria. Cell. 47: 325-7. PMID 3021339 DOI: 10.1016/0092-8674(86)90586-6 |
0.395 |
|
| 1985 |
Haring V, Scholz P, Scherzinger E, Frey J, Derbyshire K, Hatfull G, Willetts NS, Bagdasarian M. Protein RepC is involved in copy number control of the broad host range plasmid RSF1010 Proceedings of the National Academy of Sciences of the United States of America. 82: 6090-6094. PMID 3898079 DOI: 10.1073/Pnas.82.18.6090 |
0.415 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2014 |
Derbyshire KM, Gray TA. Distributive Conjugal Transfer: New Insights into Horizontal Gene Transfer and Genetic Exchange in Mycobacteria. Microbiology Spectrum. 2. PMID 25505644 DOI: 10.1128/microbiolspec.MGM2-0022-2013 |
0.291 |
|
| 1990 |
Derbyshire KM, Kramer M, Grindley ND. Role of instability in the cis action of the insertion sequence IS903 transposase. Proceedings of the National Academy of Sciences of the United States of America. 87: 4048-52. PMID 2161528 DOI: 10.1073/Pnas.87.11.4048 |
0.291 |
|
| 2023 |
Majumdar S, Deep A, Sharma MR, Canestrari J, Stone M, Smith C, Koripella RK, Keshavan P, Banavali NK, Wade JT, Gray TA, Derbyshire KM, Agrawal RK. The small mycobacterial ribosomal protein, bS22, modulates aminoglycoside accessibility to its 16S rRNA helix-44 binding site. Biorxiv : the Preprint Server For Biology. PMID 37034768 DOI: 10.1101/2023.03.31.535098 |
0.279 |
|
| 1987 |
Derbyshire KM, Hwang L, Grindley ND. Genetic analysis of the interaction of the insertion sequence IS903 transposase with its terminal inverted repeats. Proceedings of the National Academy of Sciences of the United States of America. 84: 8049-53. PMID 2825175 DOI: 10.1073/Pnas.84.22.8049 |
0.267 |
|
| 1996 |
Derbyshire KM. An IS903-based vector for transposon mutagenesis and the isolation of gene fusions. Gene. 165: 143-4. PMID 7489906 DOI: 10.1016/0378-1119(95)00512-5 |
0.266 |
|
| 1984 |
Weinert TA, Derbyshire KM, Hughson FM, Grindley ND. Replicative and conservative transpositional recombination of insertion sequences. Cold Spring Harbor Symposia On Quantitative Biology. 49: 251-60. PMID 6099240 DOI: 10.1101/Sqb.1984.049.01.029 |
0.252 |
|
| 1986 |
Derbyshire KM, Salvo JJ, Grindley ND. A simple and efficient procedure for saturation mutagenesis using mixed oligodeoxynucleotides. Gene. 46: 145-52. PMID 3803923 DOI: 10.1016/0378-1119(86)90398-7 |
0.245 |
|
| 1987 |
Derbyshire KM, Hatfull G, Willetts N. Mobilization of the non-conjugative plasmid RSF1010: A genetic and DNA sequence analysis of the mobilization region Molecular and General Genetics Mgg. 209: 411-411. DOI: 10.1007/BF00329676 |
0.242 |
|
| 1992 |
Derbyshire KM, Grindley ND. Binding of the IS903 transposase to its inverted repeat in vitro. The Embo Journal. 11: 3449-55. PMID 1324175 DOI: 10.1002/J.1460-2075.1992.Tb05424.X |
0.232 |
|
| 2023 |
Derbyshire KM, Salfinger M. Plasmid-mediated drug resistance in mycobacteria: the tip of the iceberg? Journal of Clinical Microbiology. e0062823. PMID 37724858 DOI: 10.1128/jcm.00628-23 |
0.231 |
|
| 2009 |
Bitter W, Houben EN, Bottai D, Brodin P, Brown EJ, Cox JS, Derbyshire K, Fortune SM, Gao LY, Liu J, Gey van Pittius NC, Pym AS, Rubin EJ, Sherman DR, Cole ST, et al. Systematic genetic nomenclature for type VII secretion systems. Plos Pathogens. 5: e1000507. PMID 19876390 DOI: 10.1371/Journal.Ppat.1000507 |
0.23 |
|
| 2016 |
Gray TA, Clark RR, Boucher N, Lapierre P, Smith C, Derbyshire KM. Intercellular communication and conjugation are mediated by ESX secretion systems in mycobacteria Science. 354: 347-350. DOI: 10.1126/science.aag0828 |
0.21 |
|
| 2002 |
Derbyshire KM. Revisiting protocols for Mycobacteria Trends in Microbiology. 10: 200-201. DOI: 10.1016/S0966-842X(02)02340-5 |
0.204 |
|
| 2009 |
Cooper AM, Kaplan G, Derbyshire K. TB day summit in upstate New York: key issues to address. European Journal of Immunology. 39: 1443-7. PMID 19499528 DOI: 10.1002/Eji.200990031 |
0.198 |
|
| 1987 |
Derbyshire KM, Willetts NS. Mobilization of the non-conjugative plasmid RSF1010: A genetic analysis of its origin of transfer Molecular and General Genetics Mgg. 209: 411-411. DOI: 10.1007/BF00329675 |
0.195 |
|
| 2022 |
Smith C, Canestrari JG, Wang AJ, Champion MM, Derbyshire KM, Gray TA, Wade JT. Pervasive translation in . Elife. 11. PMID 35343439 DOI: 10.7554/eLife.73980 |
0.194 |
|
| 2021 |
Zhu J, Wolf ID, Dulberger CL, Won HI, Kester JC, Judd JA, Wirth SE, Clark RR, Li Y, Luo Y, Gray TA, Wade JT, Derbyshire KM, Fortune SM, Rubin EJ. Spatiotemporal localization of proteins in mycobacteria. Cell Reports. 37: 110154. PMID 34965429 DOI: 10.1016/j.celrep.2021.110154 |
0.186 |
|
| 2023 |
Sparks IL, Derbyshire KM, Jacobs WR, Morita YS. Mycobacterium smegmatis: The Vanguard of Mycobacterial Research. Journal of Bacteriology. 205: e0033722. PMID 36598232 DOI: 10.1128/jb.00337-22 |
0.18 |
|
| 2021 |
Rokicki CAZ, Brenner JR, Dills AH, Judd JJ, Kester JC, Puffal J, Sparks IL, Prithviraj M, Anderson BR, Wade JT, Gray TA, Derbyshire KM, Fortune SM, Morita YS. Fluorescence Imaging-Based Discovery of Membrane Domain-Associated Proteins in . Journal of Bacteriology. JB0041921. PMID 34516286 DOI: 10.1128/JB.00419-21 |
0.175 |
|
| 2023 |
Klever AM, Alexander KA, Almeida D, Anderson MZ, Ball RL, Beamer G, Boggiatto P, Buikstra JE, Chandler B, Claeys TA, Concha AE, Converse PJ, Derbyshire KM, Dobos KM, Dupnik KM, et al. The Many Hosts of Mycobacteria 9 (MHM9): A conference report. Tuberculosis (Edinburgh, Scotland). 142: 102377. PMID 37531864 DOI: 10.1016/j.tube.2023.102377 |
0.092 |
|
| Hide low-probability matches. |