Michael Freitag - Publications

Oregon State University, Corvallis, OR 
Plant Pathology Agriculture, Bioinformatics Biology, Genetics, Microbiology Biology

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Alouane T, Rimbert H, Bormann J, González-Montiel GA, Loesgen S, Schäfer W, Freitag M, Langin T, Bonhomme L. Comparative Genomics of Eight Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures. International Journal of Molecular Sciences. 22. PMID 34200775 DOI: 10.3390/ijms22126257  0.323
2021 Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes WC, Alizadeh A, Freitag M, Stukenbrock EH. Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen. Plos Genetics. 17: e1009448. PMID 33750960 DOI: 10.1371/journal.pgen.1009448  0.374
2020 Feurtey A, Lorrain C, Croll D, Eschenbrenner C, Freitag M, Habig M, Haueisen J, Möller M, Schotanus K, Stukenbrock EH. Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. Bmc Genomics. 21: 588. PMID 32842972 DOI: 10.1186/S12864-020-06871-W  0.373
2020 Ridenour JB, Möller M, Freitag M. Polycomb Repression without Bristles: Facultative Heterochromatin and Genome Stability in Fungi. Genes. 11. PMID 32527036 DOI: 10.3390/Genes11060638  0.434
2019 Bosnjak N, Smith KM, Asaria I, Lahola-Chomiak A, Kishore N, Todd AT, Freitag M, Nargang FE. Involvement of a G Protein Regulatory Circuit in Alternative Oxidase Production in . G3 (Bethesda, Md.). PMID 31444295 DOI: 10.1534/G3.119.400522  0.382
2019 Adpressa DA, Connolly LR, Konkel ZM, Neuhaus GF, Chang XL, Pierce BR, Smith KM, Freitag M, Loesgen S. A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modification. Fungal Genetics and Biology : Fg & B. 103256. PMID 31344458 DOI: 10.1016/J.Fgb.2019.103256  0.343
2019 Möller M, Schotanus K, Soyer JL, Haueisen J, Happ K, Stralucke M, Happel P, Smith KM, Connolly LR, Freitag M, Stukenbrock EH. Destabilization of chromosome structure by histone H3 lysine 27 methylation. Plos Genetics. 15: e1008093. PMID 31009462 DOI: 10.1371/Journal.Pgen.1008093  0.442
2018 Connolly LR, Erlendson AA, Fargo CM, Jackson KK, Pelker MMG, Mazzola JW, Geisler MS, Freitag M. Application of the Cre/lox System to Construct Auxotrophic Markers for Quantitative Genetic Analyses in Fusarium graminearum. Methods in Molecular Biology (Clifton, N.J.). 1848: 235-263. PMID 30182239 DOI: 10.1007/978-1-4939-8724-5_16  0.327
2018 Thieme KG, Gerke J, Sasse C, Valerius O, Thieme S, Karimi R, Heinrich AK, Finkernagel F, Smith K, Bode HB, Freitag M, Ram AFJ, Braus GH. Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism. Plos Genetics. 14: e1007511. PMID 30044771 DOI: 10.1371/Journal.Pgen.1007511  0.346
2017 Friedman S, Freitag M. Evolving Centromeres and Kinetochores. Advances in Genetics. 98: 1-41. PMID 28942791 DOI: 10.1016/Bs.Adgen.2017.07.001  0.338
2017 Tisch D, Pomraning KR, Collett JR, Freitag M, Baker SE, Chen CL, Hsu PW, Chuang YC, Schuster A, Dattenböck C, Stappler E, Sulyok M, Böhmdorfer S, Oberlerchner J, Wang TF, et al. Omics analyses of Trichoderma reesei CBS999.97 and QM6a indicate a relevance of female fertility for CAZyme and transporter levels. Applied and Environmental Microbiology. PMID 28916559 DOI: 10.1128/Aem.01578-17  0.701
2017 Friedman S, Freitag M. Centrochromatin of Fungi. Progress in Molecular and Subcellular Biology. 56: 85-109. PMID 28840234 DOI: 10.1007/978-3-319-58592-5_4  0.353
2017 Erlendson AA, Friedman S, Freitag M. A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi. Microbiology Spectrum. 5. PMID 28752814 DOI: 10.1128/Microbiolspec.Funk-0054-2017  0.408
2017 Freitag M. Histone Methylation by SET Domain Proteins in Fungi. Annual Review of Microbiology. PMID 28715960 DOI: 10.1146/Annurev-Micro-102215-095757  0.454
2017 Ivanov IP, Wei J, Caster SZ, Smith KM, Michel AM, Zhang Y, Firth AE, Freitag M, Dunlap JC, Bell-Pedersen D, Atkins JF, Sachs MS. Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity. Mbio. 8. PMID 28655822 DOI: 10.1128/Mbio.00844-17  0.338
2017 Zhou M, Wu S, Stenoien DL, Zhang Z, Connolly L, Freitag M, Paša-Tolić L. Profiling Changes in Histone Post-translational Modifications by Top-Down Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1507: 153-168. PMID 27832539 DOI: 10.1007/978-1-4939-6518-2_12  0.322
2016 Qi Z, Smith KM, Bredeweg EL, Bosnjak N, Freitag M, Nargang FE. Alternative Oxidase Transcription Factors AOD2 and AOD5 of Neurospora crassa Control the Expression of Genes Involved in Energy Production and Metabolism. G3 (Bethesda, Md.). PMID 27986792 DOI: 10.1534/G3.116.035402  0.407
2016 Klocko AD, Ormsby T, Galazka JM, Leggett NA, Uesaka M, Honda S, Freitag M, Selker EU. Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America. PMID 27856763 DOI: 10.1073/Pnas.1615546113  0.424
2016 Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurely JM, Dunlap JC, Galagan JE, Freitag M, et al. The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell-Fusion. G3 (Bethesda, Md.). PMID 27856696 DOI: 10.1534/G3.116.034298  0.332
2016 Becker K, Ziemons S, Lentz K, Freitag M, Kück U. Genome-Wide Chromatin Immunoprecipitation Sequencing Analysis of the Penicillium chrysogenum Velvet Protein PcVelA Identifies Methyltransferase PcLlmA as a Novel Downstream Regulator of Fungal Development. Msphere. 1. PMID 27570838 DOI: 10.1128/mSphere.00149-16  0.322
2016 Studt L, Rösler SM, Burkhardt I, Arndt B, Freitag M, Humpf HU, Dickschat JS, Tudzynski B. Knock-down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi. Environmental Microbiology. PMID 27348741 DOI: 10.1111/1462-2920.13427  0.388
2016 Galazka JM, Klocko AD, Uesake M, Honda S, Selker EU, Freitag M. Neurospora chromosomes are organized by blocs of importin alpha-dependent heterochromatin that are largely independent of H3K9me3. Genome Research. PMID 27260477 DOI: 10.1101/Gr.203182.115  0.407
2016 Freitag M. The kinetochore interaction network (KIN) of ascomycetes. Mycologia. PMID 26908646 DOI: 10.3852/15-182  0.351
2015 Schotanus K, Soyer JL, Connolly LR, Grandaubert J, Happel P, Smith KM, Freitag M, Stukenbrock EH. Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes. Epigenetics & Chromatin. 8: 41. PMID 26430472 DOI: 10.1186/S13072-015-0033-5  0.372
2015 Roquis D, Lepesant JM, Picard MA, Freitag M, Parrinello H, Groth M, Emans R, Cosseau C, Grunau C. The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection. Plos Neglected Tropical Diseases. 9: e0003853. PMID 26305466 DOI: 10.1371/Journal.Pntd.0003853  0.34
2015 Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS. Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei. Genome Announcements. 3. PMID 26272569 DOI: 10.1128/Genomea.00885-15  0.728
2015 Wang Y, Smith KM, Taylor JW, Freitag M, Stajich JE. Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon. G3 (Bethesda, Md.). PMID 26109355 DOI: 10.1534/G3.115.017921  0.373
2015 Soyer JL, Möller M, Schotanus K, Connolly LR, Galazka JM, Freitag M, Stukenbrock EH. Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). Fungal Genetics and Biology : Fg & B. 79: 63-70. PMID 25857259 DOI: 10.1016/J.Fgb.2015.03.006  0.475
2015 Becker K, Beer C, Freitag M, Kück U. Genome-wide identification of target genes of a mating-type α-domain transcription factor reveals functions beyond sexual development. Molecular Microbiology. 96: 1002-22. PMID 25728030 DOI: 10.1111/Mmi.12987  0.381
2014 Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, et al. Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proceedings of the National Academy of Sciences of the United States of America. 111: 16995-7002. PMID 25362047 DOI: 10.1073/Pnas.1418963111  0.37
2014 He Y, Yam C, Pomraning K, Chin JS, Yew JY, Freitag M, Oliferenko S. Increase in cellular triacylglycerol content and emergence of large ER-associated lipid droplets in the absence of CDP-DG synthase function. Molecular Biology of the Cell. 25: 4083-95. PMID 25318672 DOI: 10.1091/Mbc.E14-03-0832  0.662
2014 Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, et al. Genome-wide characterization of light-regulated genes in Neurospora crassa. G3 (Bethesda, Md.). 4: 1731-45. PMID 25053707 DOI: 10.1534/G3.114.012617  0.324
2014 Sasaki T, Lynch KL, Mueller CV, Friedman S, Freitag M, Lewis ZA. Heterochromatin controls γH2A localization in Neurospora crassa. Eukaryotic Cell. 13: 990-1000. PMID 24879124 DOI: 10.1128/Ec.00117-14  0.442
2014 Galazka JM, Freitag M. Variability of chromosome structure in pathogenic fungi--of 'ends and odds'. Current Opinion in Microbiology. 20: 19-26. PMID 24835423 DOI: 10.1016/J.Mib.2014.04.002  0.303
2014 Smith KM, Gautschi JT, Freitag M. Decoding the cryptic genomes of fungi: the promise of novel antibiotics. Future Microbiology. 9: 265-8. PMID 24762300 DOI: 10.2217/Fmb.14.6  0.341
2014 Soyer JL, El Ghalid M, Glaser N, Ollivier B, Linglin J, Grandaubert J, Balesdent MH, Connolly LR, Freitag M, Rouxel T, Fudal I. Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans. Plos Genetics. 10: e1004227. PMID 24603691 DOI: 10.1371/journal.pgen.1004227  0.335
2013 Connolly LR, Smith KM, Freitag M. The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters. Plos Genetics. 9: e1003916. PMID 24204317 DOI: 10.1371/Journal.Pgen.1003916  0.461
2013 Studt L, Schmidt FJ, Jahn L, Sieber CM, Connolly LR, Niehaus EM, Freitag M, Humpf HU, Tudzynski B. Two histone deacetylases, FfHda1 and FfHda2, are important for Fusarium fujikuroi secondary metabolism and virulence. Applied and Environmental Microbiology. 79: 7719-34. PMID 24096420 DOI: 10.1128/Aem.01557-13  0.388
2013 Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M. The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. Plos Genetics. 9: e1003820. PMID 24068976 DOI: 10.1371/Journal.Pgen.1003820  0.446
2013 Mouriño-Pérez RR, Linacre-Rojas LP, Román-Gavilanes AI, Lew TK, Callejas-Negrete OA, Roberson RW, Freitag M. MTB-3, a microtubule plus-end tracking protein (+TIP) of Neurospora crassa. Plos One. 8: e70655. PMID 23950979 DOI: 10.1371/Journal.Pone.0070655  0.316
2013 Niehaus EM, Kleigrewe K, Wiemann P, Studt L, Sieber CM, Connolly LR, Freitag M, Güldener U, Tudzynski B, Humpf HU. Genetic manipulation of the Fusarium fujikuroi fusarin gene cluster yields insight into the complex regulation and fusarin biosynthetic pathway. Chemistry & Biology. 20: 1055-66. PMID 23932525 DOI: 10.1016/J.Chembiol.2013.07.004  0.357
2013 Wiemann P, Sieber CM, von Bargen KW, Studt L, Niehaus EM, Espino JJ, Huß K, Michielse CB, Albermann S, Wagner D, Bergner SV, Connolly LR, Fischer A, Reuter G, Kleigrewe K, ... ... Freitag M, et al. Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites. Plos Pathogens. 9: e1003475. PMID 23825955 DOI: 10.1371/Journal.Ppat.1003475  0.409
2013 Vining K, Pomraning KR, Wilhelm LJ, Ma C, Pellegrini M, Di Y, Mockler TC, Freitag M, Strauss SH. Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa. Bmc Plant Biology. 13: 92. PMID 23799904 DOI: 10.1186/1471-2229-13-92  0.738
2013 Zhu R, Shevchenko O, Ma C, Maury S, Freitag M, Strauss SH. Poplars with a PtDDM1-RNAi transgene have reduced DNA methylation and show aberrant post-dormancy morphology. Planta. 237: 1483-93. PMID 23455459 DOI: 10.1007/S00425-013-1858-4  0.432
2013 Karimi-Aghcheh R, Bok JW, Phatale PA, Smith KM, Baker SE, Lichius A, Omann M, Zeilinger S, Seiboth B, Rhee C, Keller NP, Freitag M, Kubicek CP. Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator. G3 (Bethesda, Md.). 3: 369-78. PMID 23390613 DOI: 10.1534/G3.112.005140  0.784
2013 Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, et al. Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda, Md.). 3: 41-63. PMID 23316438 DOI: 10.1534/G3.112.004044  0.428
2012 Pomraning KR, Smith KM, Bredeweg EL, Connolly LR, Phatale PA, Freitag M. Library preparation and data analysis packages for rapid genome sequencing. Methods in Molecular Biology (Clifton, N.J.). 944: 1-22. PMID 23065605 DOI: 10.1007/978-1-62703-122-6_1  0.738
2012 Puckett SE, Reese KA, Mitev GM, Mullen V, Johnson RC, Pomraning KR, Mellbye BL, Tilley LD, Iversen PL, Freitag M, Geller BL. Bacterial resistance to antisense peptide phosphorodiamidate morpholino oligomers. Antimicrobial Agents and Chemotherapy. 56: 6147-53. PMID 22985881 DOI: 10.1128/Aac.00850-12  0.686
2012 Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, ... ... Freitag M, et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. The New Phytologist. 196: 713-25. PMID 22861491 DOI: 10.1111/J.1469-8137.2012.04258.X  0.716
2012 Smith KM, Galazka JM, Phatale PA, Connolly LR, Freitag M. Centromeres of filamentous fungi. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 635-56. PMID 22752455 DOI: 10.1007/S10577-012-9290-3  0.757
2012 Seiboth B, Karimi RA, Phatale PA, Linke R, Hartl L, Sauer DG, Smith KM, Baker SE, Freitag M, Kubicek CP. The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei. Molecular Microbiology. 84: 1150-64. PMID 22554051 DOI: 10.1111/J.1365-2958.2012.08083.X  0.768
2012 Lepesant JM, Cosseau C, Boissier J, Freitag M, Portela J, Climent D, Perrin C, Zerlotini A, Grunau C. Chromatin structural changes around satellite repeats on the female sex chromosome in Schistosoma mansoni and their possible role in sex chromosome emergence. Genome Biology. 13: R14. PMID 22377319 DOI: 10.1186/Gb-2012-13-2-R14  0.322
2012 Ishikawa FH, Souza EA, Shoji JY, Connolly L, Freitag M, Read ND, Roca MG. Heterokaryon incompatibility is suppressed following conidial anastomosis tube fusion in a fungal plant pathogen. Plos One. 7: e31175. PMID 22319613 DOI: 10.1371/Journal.Pone.0031175  0.313
2012 Vining KJ, Pomraning KR, Wilhelm LJ, Priest HD, Pellegrini M, Mockler TC, Freitag M, Strauss SH. Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. Bmc Genomics. 13: 27. PMID 22251412 DOI: 10.1186/1471-2164-13-27  0.738
2012 Smith KM, Phatale PA, Bredeweg EL, Connolly LR, Pomraning KR, Freitag M. Epigenetics of Filamentous Fungi Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.201100035  0.767
2011 Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU. Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation. Plos Genetics. 7: e1002423. PMID 22242002 DOI: 10.1371/Journal.Pgen.1002423  0.371
2011 Riquelme M, Yarden O, Bartnicki-Garcia S, Bowman B, Castro-Longoria E, Free SJ, Fleissner A, Freitag M, Lew RR, Mouriño-Pérez R, Plamann M, Rasmussen C, Richthammer C, Roberson RW, Sanchez-Leon E, et al. Architecture and development of the Neurospora crassa hypha -- a model cell for polarized growth. Fungal Biology. 115: 446-74. PMID 21640311 DOI: 10.1016/J.Funbio.2011.02.008  0.301
2011 Pomraning KR, Smith KM, Freitag M. Bulk segregant analysis followed by high-throughput sequencing reveals the Neurospora cell cycle gene, ndc-1, to be allelic with the gene for ornithine decarboxylase, spe-1. Eukaryotic Cell. 10: 724-33. PMID 21515825 DOI: 10.1128/Ec.00016-11  0.698
2011 Smith KM, Phatale PA, Sullivan CM, Pomraning KR, Freitag M. Heterochromatin is required for normal distribution of Neurospora crassa CenH3. Molecular and Cellular Biology. 31: 2528-42. PMID 21505064 DOI: 10.1128/Mcb.01285-10  0.757
2011 Vining K, Pomraning KR, Wilhelm L, Priest HD, Ma C, Zhu R, Etherington E, Pellegrini M, Mockler T, Freitag M, Strauss SH. Developmental variation in DNA methylation in poplar (Populus trichocarpa) Bmc Proceedings. 5: P177. DOI: 10.1186/1753-6561-5-S7-P177  0.696
2010 Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF, Thomas TL, Carrington JC, Stajich JE, Bell-Pedersen D, Brunner M, ... Freitag M, et al. Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryotic Cell. 9: 1549-56. PMID 20675579 DOI: 10.1128/Ec.00154-10  0.321
2010 Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, ... ... Freitag M, et al. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. Plos Genetics. 6: e1000891. PMID 20386741 DOI: 10.1371/Journal.Pgen.1000891  0.325
2010 Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464: 367-73. PMID 20237561 DOI: 10.1038/Nature08850  0.346
2009 Cosseau C, Azzi A, Smith K, Freitag M, Mitta G, Grunau C. Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters. Molecular and Biochemical Parasitology. 166: 70-6. PMID 19428675 DOI: 10.1016/J.Molbiopara.2009.02.015  0.433
2009 Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schübeler D, Selker EU. Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Research. 19: 427-37. PMID 19092133 DOI: 10.1101/Gr.086231.108  0.439
2009 Pomraning KR, Smith KM, Freitag M. Genome-wide high throughput analysis of DNA methylation in eukaryotes. Methods (San Diego, Calif.). 47: 142-50. PMID 18950712 DOI: 10.1016/J.Ymeth.2008.09.022  0.743
2008 Smith KM, Kothe GO, Matsen CB, Khlafallah TK, Adhvaryu KK, Hemphill M, Freitag M, Motamedi MR, Selker EU. The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9. Epigenetics & Chromatin. 1: 5. PMID 19014414 DOI: 10.1186/1756-8935-1-5  0.422
2008 Lee DW, Freitag M, Selker EU, Aramayo R. A cytosine methyltransferase homologue is essential for sexual development in Aspergillus nidulans. Plos One. 3: e2531. PMID 18575630 DOI: 10.1371/Journal.Pone.0002531  0.452
2008 Jacobson DJ, Raju NB, Freitag M. Evidence for the absence of meiotic silencing by unpaired DNA in Neurospora tetrasperma. Fungal Genetics and Biology : Fg & B. 45: 351-62. PMID 18023372 DOI: 10.1016/J.Fgb.2007.09.014  0.38
2006 Grimaldi B, Coiro P, Filetici P, Berge E, Dobosy JR, Freitag M, Selker EU, Ballario P. The Neurospora crassa White Collar-1 dependent blue light response requires acetylation of histone H3 lysine 14 by NGF-1. Molecular Biology of the Cell. 17: 4576-83. PMID 16914525 DOI: 10.1091/Mbc.E06-03-0232  0.336
2005 Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, BaÅŸtürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, ... ... Freitag M, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341  0.441
2005 Freitag M, Selker EU. Controlling DNA methylation: many roads to one modification. Current Opinion in Genetics & Development. 15: 191-9. PMID 15797202 DOI: 10.1016/J.Gde.2005.02.003  0.411
2004 Freitag M, Hickey PC, Raju NB, Selker EU, Read ND. GFP as a tool to analyze the organization, dynamics and function of nuclei and microtubules in Neurospora crassa. Fungal Genetics and Biology : Fg & B. 41: 897-910. PMID 15341912 DOI: 10.1016/J.Fgb.2004.06.008  0.304
2004 Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, et al. Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiology and Molecular Biology Reviews : Mmbr. 68: 1-108. PMID 15007097 DOI: 10.1128/Mmbr.68.1.1-108.2004  0.453
2004 Freitag M, Hickey PC, Khlafallah TK, Read ND, Selker EU. HP1 is essential for DNA methylation in neurospora. Molecular Cell. 13: 427-34. PMID 14967149 DOI: 10.1016/S1097-2765(04)00024-3  0.427
2003 Selker EU, Tountas NA, Cross SH, Margolin BS, Murphy JG, Bird AP, Freitag M. The methylated component of the Neurospora crassa genome. Nature. 422: 893-7. PMID 12712205 DOI: 10.1038/Nature01564  0.447
2003 Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Freitag M, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554  0.446
2003 Folco HD, Freitag M, Ramón A, Temporini ED, Alvarez ME, García I, Scazzocchio C, Selker EU, Rosa AL. Histone H1 Is required for proper regulation of pyruvate decarboxylase gene expression in Neurospora crassa. Eukaryotic Cell. 2: 341-50. PMID 12684383 DOI: 10.1128/Ec.2.2.341-350.2003  0.431
2002 Selker EU, Freitag M, Kothe GO, Margolin BS, Rountree MR, Allis CD, Tamaru H. Induction and maintenance of nonsymmetrical DNA methylation in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 99: 16485-90. PMID 12189210 DOI: 10.1073/Pnas.182427299  0.425
2002 Freitag M, Williams RL, Kothe GO, Selker EU. A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America. 99: 8802-7. PMID 12072568 DOI: 10.1073/Pnas.132212899  0.436
2000 Miao VP, Freitag M, Selker EU. Short TpA-rich segments of the zeta-eta region induce DNA methylation in Neurospora crassa. Journal of Molecular Biology. 300: 249-73. PMID 10873464 DOI: 10.1006/Jmbi.2000.3864  0.404
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