Todd R. Klaenhammer - Publications

Functional Genomics North Carolina State University, Raleigh, NC 
Molecular Biology, Microbiology Biology

147 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Goh YJ, Barrangou R, Klaenhammer TR. Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression. Mbio. 12. PMID 33500337 DOI: 10.1128/mBio.03399-20  1
2018 Stout EA, Sanozky-Dawes R, Goh YJ, Crawley AB, Klaenhammer TR, Barrangou R. Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri. Microbiology (Reading, England). PMID 30024364 DOI: 10.1099/Mic.0.000689  1
2018 Daughtry KV, Johanningsmeier SD, Sanozky-Dawes R, Klaenhammer TR, Barrangou R. Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber. International Journal of Food Microbiology. 280: 46-56. PMID 29778800 DOI: 10.1016/J.Ijfoodmicro.2018.04.044  1
2017 Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M. Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals. Mbio. 8. PMID 29162708 DOI: 10.1128/Mbio.01421-17  1
2017 Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR. The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM. Frontiers in Microbiology. 8: 1185. PMID 28713337 DOI: 10.3389/Fmicb.2017.01185  1
2017 Selle K, Goh YJ, Johnson BR, O'Flaherty S, Andersen JM, Barrangou R, Klaenhammer TR. Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus. Frontiers in Microbiology. 8: 553. PMID 28443071 DOI: 10.3389/Fmicb.2017.00553  1
2017 Møller MS, Goh YJ, Rasmussen KB, Cypryk W, Celebioglu HU, Klaenhammer TR, Svensson B, Abou Hachem M. An extracellular cell-attached pullulanase confers branched α-glucan utilization in human gut Lactobacillus acidophilus. Applied and Environmental Microbiology. PMID 28411221 DOI: 10.1128/Aem.00402-17  1
2017 Azcarate-Peril MA, Ritter AJ, Savaiano D, Monteagudo-Mera A, Anderson C, Magness ST, Klaenhammer TR. Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals. Proceedings of the National Academy of Sciences of the United States of America. PMID 28049818 DOI: 10.1073/Pnas.1606722113  0.64
2016 Hymes JP, Klaenhammer TR. Stuck in the Middle: Fibronectin-Binding Proteins in Gram-Positive Bacteria. Frontiers in Microbiology. 7: 1504. PMID 27713740 DOI: 10.3389/Fmicb.2016.01504  1
2016 O'Flaherty S, Klaenhammer TR. Multivalent chromosomal expression of the Clostridium botulinum serotype A neurotoxin heavy chain antigen and Bacillus anthracis protective antigen in Lactobacillus acidophilus. Applied and Environmental Microbiology. PMID 27496774 DOI: 10.1128/Aem.01533-16  1
2016 Johnson BR, Klaenhammer TR. AcmB is an S-layer associated β-N-acetylglucosaminidase and functional autolysin in Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. PMID 27422832 DOI: 10.1128/Aem.02025-16  1
2016 Celebioglu HU, Ejby M, Majumder A, Købler C, Jun Goh Y, Thorsen K, Schmidt B, O'Flaherty S, Abou Hachem M, Lahtinen SJ, Jacobsen S, Klaenhammer TR, Brix S, Mølhave K, Svensson B. Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose - an emerging prebiotic. Proteomics. PMID 26959526 DOI: 10.1002/Pmic.201500212  1
2016 Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR. Functional analysis of an S-layer associated fibronectin-binding protein in Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. PMID 26921419 DOI: 10.1128/Aem.00024-16  1
2016 Johnson BR, Hymes J, Sanozky-Dawes R, Henriksen ED, Barrangou R, Klaenhammer TR. Conserved S-layer-associated proteins revealed by exoproteomic survey of S-layer-forming lactobacilli Applied and Environmental Microbiology. 82: 134-145. DOI: 10.1128/AEM.01968-15  1
2016 Hill C, Scott K, Klaenhammer TR, Quigley E, Sanders ME. Probiotic nomenclature matters Gut Microbes. 7: 1-2. DOI: 10.1080/19490976.2015.1127484  1
2015 Durmaz E, Hu Y, Aroian RV, Klaenhammer TR. Intracellular and extracellular expression of Bacillus thuringiensis crystal protein Cry5B in Lactococcus lactis for use as an anthelminthic. Applied and Environmental Microbiology. PMID 26682852 DOI: 10.1128/Aem.02365-15  1
2015 Johnson BR, Hymes J, Sanozky-Dawes R, Henriksen ED, Barrangou R, Klaenhammer TR. Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli. Applied and Environmental Microbiology. 82: 134-45. PMID 26475115 DOI: 10.1128/Aem.01968-15  1
2015 Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, ... ... Klaenhammer TR, et al. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nature Communications. 6: 8322. PMID 26415554 DOI: 10.1038/Ncomms9322  1
2015 Selle K, Klaenhammer TR, Barrangou R. CRISPR-based screening of genomic island excision events in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 112: 8076-81. PMID 26080436 DOI: 10.1073/Pnas.1508525112  1
2015 Lightfoot YL, Selle K, Yang T, Goh YJ, Sahay B, Zadeh M, Owen JL, Colliou N, Li E, Johannssen T, Lepenies B, Klaenhammer TR, Mohamadzadeh M. SIGNR3-dependent immune regulation by Lactobacillus acidophilus surface layer protein A in colitis. The Embo Journal. 34: 881-95. PMID 25666591 DOI: 10.15252/Embj.201490296  1
2015 Goh YJ, Klaenhammer TR. Genetic mechanisms of prebiotic oligosaccharide metabolism in probiotic microbes. Annual Review of Food Science and Technology. 6: 137-56. PMID 25532597 DOI: 10.1146/Annurev-Food-022814-015706  1
2015 Call EK, Goh YJ, Selle K, Klaenhammer TR, O'Flaherty S. Sortase-deficient lactobacilli: effect on immunomodulation and gut retention. Microbiology (Reading, England). 161: 311-21. PMID 25500495 DOI: 10.1099/Mic.0.000007  1
2015 Douglas GL, Azcarate-Peril MA, Klaenhammer TR. Genomic Evolution of Lactic Acid Bacteria: From Single Gene Function to the Pan-genome Biotechnology of Lactic Acid Bacteria: Novel Applications: Second Edition. 32-54. DOI: 10.1002/9781118868386.ch3  1
2014 Goh YJ, Klaenhammer TR. Insights into glycogen metabolism in Lactobacillus acidophilus: impact on carbohydrate metabolism, stress tolerance and gut retention. Microbial Cell Factories. 13: 94. PMID 25410006 DOI: 10.1186/S12934-014-0094-3  1
2014 Barrangou R, Klaenhammer TR. Microbiology: Bacteria get vaccinated. Nature. 513: 175-6. PMID 25209793 DOI: 10.1038/513175A  1
2014 Selle K, Goh YJ, O'Flaherty S, Klaenhammer TR. Development of an integration mutagenesis system in Lactobacillus gasseri. Gut Microbes. 5: 326-32. PMID 24837903 DOI: 10.4161/Gmic.29101  1
2014 Johnson BR, Klaenhammer TR. Impact of genomics on the field of probiotic research: historical perspectives to modern paradigms. Antonie Van Leeuwenhoek. 106: 141-56. PMID 24748373 DOI: 10.1007/S10482-014-0171-Y  1
2014 Baugher JL, Durmaz E, Klaenhammer TR. Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer. Applied and Environmental Microbiology. 80: 3508-17. PMID 24682298 DOI: 10.1128/Aem.04092-13  1
2014 Sanders ME, Klaenhammer TR, Ouwehand AC, Pot B, Johansen E, Heimbach JT, Marco ML, Tennilä J, Ross RP, Franz C, Pagé N, Pridmore RD, Leyer G, Salminen S, Charbonneau D, et al. Effects of genetic, processing, or product formulation changes on efficacy and safety of probiotics. Annals of the New York Academy of Sciences. 1309: 1-18. PMID 24571253 DOI: 10.1111/Nyas.12363  1
2014 Møller MS, Goh YJ, Viborg AH, Andersen JM, Klaenhammer TR, Svensson B, Abou Hachem M. Recent insight in α-glucan metabolism in probiotic bacteria Biologia (Poland). 69: 713-721. DOI: 10.2478/S11756-014-0367-7  1
2013 Savaiano DA, Ritter AJ, Klaenhammer TR, James GM, Longcore AT, Chandler JR, Walker WA, Foyt HL. Improving lactose digestion and symptoms of lactose intolerance with a novel galacto-oligosaccharide (RP-G28): a randomized, double-blind clinical trial. Nutrition Journal. 12: 160. PMID 24330605 DOI: 10.1186/1475-2891-12-160  1
2013 Petschow B, Doré J, Hibberd P, Dinan T, Reid G, Blaser M, Cani PD, Degnan FH, Foster J, Gibson G, Hutton J, Klaenhammer TR, Ley R, Nieuwdorp M, Pot B, et al. Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences. 1306: 1-17. PMID 24266656 DOI: 10.1111/Nyas.12303  1
2013 Johnson B, Selle K, O'Flaherty S, Goh YJ, Klaenhammer T. Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM Microbiology (United Kingdom). 159: 2269-2282. PMID 24002751 DOI: 10.1099/Mic.0.070755-0  1
2013 Goh YJ, Klaenhammer TR. A functional glycogen biosynthesis pathway in Lactobacillus acidophilus: expression and analysis of the glg operon. Molecular Microbiology. 89: 1187-200. PMID 23879596 DOI: 10.1111/Mmi.12338  1
2013 Andersen JM, Barrangou R, Abou Hachem M, Lahtinen SJ, Goh YJ, Svensson B, Klaenhammer TR. Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04. Bmc Genomics. 14: 312. PMID 23663691 DOI: 10.1186/1471-2164-14-312  1
2013 Call EK, Klaenhammer TR. Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria. Frontiers in Microbiology. 4: 73. PMID 23579319 DOI: 10.3389/Fmicb.2013.00073  1
2013 Selle K, Klaenhammer TR. Genomic and phenotypic evidence for probiotic influences of Lactobacillus gasseri on human health. Fems Microbiology Reviews. 37: 915-35. PMID 23488471 DOI: 10.1111/1574-6976.12021  1
2013 Abou Hachem M, Andersen JM, Barrangou R, Moller MS, Fredslund F, Majumder A, Ejby M, Lahtinen SJ, Jacobsen S, Lo Leggio L, Goh YJ, Klaenhammer TR, Svensson B. Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria Biocatalysis and Biotransformation. 31: 226-235. DOI: 10.3109/10242422.2013.828048  1
2012 Andersen JM, Barrangou R, Hachem MA, Lahtinen SJ, Goh YJ, Svensson B, Klaenhammer TR. Transcriptional analysis of prebiotic uptake and catabolism by Lactobacillus acidophilus NCFM. Plos One. 7: e44409. PMID 23028535 DOI: 10.1371/Journal.Pone.0044409  1
2012 Klaenhammer TR, Kleerebezem M, Kopp MV, Rescigno M. The impact of probiotics and prebiotics on the immune system. Nature Reviews. Immunology. 12: 728-34. PMID 23007572 DOI: 10.1038/Nri3312  1
2012 Kolling GL, Wu M, Warren CA, Durmaz E, Klaenhammer TR, Timko MP, Guerrant RL. Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production. Gut Microbes. 3: 523-9. PMID 22895082 DOI: 10.4161/Gmic.21757  1
2012 Khazaie K, Zadeh M, Khan MW, Bere P, Gounari F, Dennis K, Blatner NR, Owen JL, Klaenhammer TR, Mohamadzadeh M. Abating colon cancer polyposis by Lactobacillus acidophilus deficient in lipoteichoic acid. Proceedings of the National Academy of Sciences of the United States of America. 109: 10462-7. PMID 22689992 DOI: 10.1073/Pnas.1207230109  1
2012 O'Flaherty S, Klaenhammer TR. Influence of exposure time on gene expression by human intestinal epithelial cells exposed to Lactobacillus acidophilus. Applied and Environmental Microbiology. 78: 5028-32. PMID 22562992 DOI: 10.1128/Aem.00504-12  1
2012 Rodrigues da Cunha L, Fortes Ferreira CLL, Durmaz E, Goh YJ, Sanozky-Dawes R, Klaenhammer T. Characterization of Lactobacillus gasseri isolates from a breast-fed infant Gut Microbes. 3: 15-24. PMID 22555546 DOI: 10.4161/Gmic.19489  1
2012 Zadeh M, Khan MW, Goh YJ, Selle K, Owen JL, Klaenhammer T, Mohamadzadeh M. Induction of intestinal pro-inflammatory immune responses by lipoteichoic acid. Journal of Inflammation (London, England). 9: 7. PMID 22423982 DOI: 10.1186/1476-9255-9-7  1
2011 O'Flaherty S, Klaenhammer TR. The impact of omic technologies on the study of food microbes. Annual Review of Food Science and Technology. 2: 353-71. PMID 22129387 DOI: 10.1146/Annurev-Food-030810-110338  1
2011 Andersen JM, Barrangou R, Abou Hachem M, Lahtinen S, Goh YJ, Svensson B, Klaenhammer TR. Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus. Proceedings of the National Academy of Sciences of the United States of America. 108: 17785-90. PMID 22006318 DOI: 10.1073/Pnas.1114152108  1
2011 Baugher JL, Klaenhammer TR. Invited review: Application of omics tools to understanding probiotic functionality. Journal of Dairy Science. 94: 4753-65. PMID 21943727 DOI: 10.3168/Jds.2011-4384  1
2011 Douglas GL, Klaenhammer TR. Directed chromosomal integration and expression of the reporter gene gusA3 in Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 77: 7365-71. PMID 21873486 DOI: 10.1128/Aem.06028-11  1
2011 Douglas GL, Goh YJ, Klaenhammer TR. Integrative food grade expression system for lactic acid bacteria. Methods in Molecular Biology (Clifton, N.J.). 765: 373-87. PMID 21815104 DOI: 10.1007/978-1-61779-197-0_22  1
2011 Altermann E, Klaenhammer TR. Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis. Genes & Nutrition. 6: 319-40. PMID 21484153 DOI: 10.1007/S12263-010-0191-9  0.4
2011 Duong T, Miller MJ, Barrangou R, Azcarate-Peril MA, Klaenhammer TR. Construction of vectors for inducible and constitutive gene expression in Lactobacillus. Microbial Biotechnology. 4: 357-67. PMID 21375708 DOI: 10.1111/J.1751-7915.2010.00200.X  1
2011 Mohamadzadeh M, Pfeiler EA, Brown JB, Zadeh M, Gramarossa M, Managlia E, Bere P, Sarraj B, Khan MW, Pakanati KC, Ansari MJ, O'Flaherty S, Barrett T, Klaenhammer TR. Regulation of induced colonic inflammation by Lactobacillus acidophilus deficient in lipoteichoic acid. Proceedings of the National Academy of Sciences of the United States of America. 108: 4623-30. PMID 21282652 DOI: 10.1073/pnas.1005066107  1
2010 Douglas GL, Klaenhammer TR. Genomic evolution of domesticated microorganisms. Annual Review of Food Science and Technology. 1: 397-414. PMID 22129342 DOI: 10.1146/Annurev.Food.102308.124134  1
2010 Mohamadzadeh M, Durmaz E, Zadeh M, Pakanati KC, Gramarossa M, Cohran V, Klaenhammer TR. Targeted expression of anthrax protective antigen by Lactobacillus gasseri as an anthrax vaccine. Future Microbiology. 5: 1289-96. PMID 20722604 DOI: 10.2217/Fmb.10.78  1
2010 Goh YJ, Klaenhammer TR. Functional roles of aggregation-promoting-like factor in stress tolerance and adherence of Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 76: 5005-12. PMID 20562289 DOI: 10.1128/Aem.00030-10  1
2009 Pfeiler EA, Klaenhammer TR. Role of transporter proteins in bile tolerance of Lactobacillus acidophilus. Applied and Environmental Microbiology. 75: 6013-6. PMID 19633113 DOI: 10.1128/Aem.00495-09  1
2009 Goh YJ, Azcárate-Peril MA, O'Flaherty S, Durmaz E, Valence F, Jardin J, Lortal S, Klaenhammer TR. Development and application of a upp-based counterselective gene replacement system for the study of the S-layer protein SlpX of Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 75: 3093-105. PMID 19304841 DOI: 10.1128/Aem.02502-08  1
2009 Buck BL, Azcarate-Peril MA, Klaenhammer TR. Role of autoinducer-2 on the adhesion ability of Lactobacillus acidophilus. Journal of Applied Microbiology. 107: 269-79. PMID 19302300 DOI: 10.1111/J.1365-2672.2009.04204.X  1
2009 Goh YJ, Klaenhammer TR. Genomic features of Lactobacillus species. Frontiers in Bioscience (Landmark Edition). 14: 1362-86. PMID 19273135 DOI: 10.2741/3313  1
2009 Mohamadzadeh M, Duong T, Sandwick SJ, Hoover T, Klaenhammer TR. Dendritic cell targeting of Bacillus anthracis protective antigen expressed by Lactobacillus acidophilus protects mice from lethal challenge. Proceedings of the National Academy of Sciences of the United States of America. 106: 4331-6. PMID 19246373 DOI: 10.1073/Pnas.0900029106  0.48
2009 Schroeter J, Klaenhammer T. Genomics of lactic acid bacteria Fems Microbiology Letters. 292: 1-6. PMID 19087207 DOI: 10.1111/J.1574-6968.2008.01442.X  1
2009 Ventura M, O'Flaherty S, Claesson MJ, Turroni F, Klaenhammer TR, van Sinderen D, O'Toole PW. Genome-scale analyses of health-promoting bacteria: probiogenomics. Nature Reviews. Microbiology. 7: 61-71. PMID 19029955 DOI: 10.1038/Nrmicro2047  1
2008 Konstantinov SR, Smidt H, de Vos WM, Bruijns SC, Singh SK, Valence F, Molle D, Lortal S, Altermann E, Klaenhammer TR, van Kooyk Y. S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions. Proceedings of the National Academy of Sciences of the United States of America. 105: 19474-9. PMID 19047644 DOI: 10.1073/Pnas.0810305105  0.4
2008 Mohamadzadeh M, Klaenhammer TR. Specific Lactobacillus species differentially activate Toll-like receptors and downstream signals in dendritic cells. Expert Review of Vaccines. 7: 1155-64. PMID 18844590 DOI: 10.1586/14760584.7.8.1155  0.4
2008 Klaenhammer TR, Altermann E, Pfeiler E, Buck BL, Goh YJ, O'Flaherty S, Barrangou R, Duong T. Functional genomics of probiotic Lactobacilli. Journal of Clinical Gastroenterology. 42: S160-2. PMID 18685516 DOI: 10.1097/Mcg.0B013E31817Da140  1
2008 Durmaz E, Miller MJ, Azcarate-Peril MA, Toon SP, Klaenhammer TR. Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1. Applied and Environmental Microbiology. 74: 4601-9. PMID 18539811 DOI: 10.1128/Aem.00010-08  0.64
2008 Azcarate-Peril MA, Altermann E, Goh YJ, Tallon R, Sanozky-Dawes RB, Pfeiler EA, O'Flaherty S, Buck BL, Dobson A, Duong T, Miller MJ, Barrangou R, Klaenhammer TR. Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism. Applied and Environmental Microbiology. 74: 4610-25. PMID 18539810 DOI: 10.1128/Aem.00054-08  1
2008 Mohamadzadeh M, Duong T, Hoover T, Klaenhammer TR. Targeting mucosal dendritic cells with microbial antigens from probiotic lactic acid bacteria. Expert Review of Vaccines. 7: 163-74. PMID 18324887 DOI: 10.1586/14760584.7.2.163  0.48
2007 Pfeiler EA, Klaenhammer TR. The genomics of lactic acid bacteria. Trends in Microbiology. 15: 546-53. PMID 18024129 DOI: 10.1016/J.Tim.2007.09.010  1
2007 Sturino JM, Klaenhammer TR. Inhibition of bacteriophage replication in Streptococcus thermophilus by subunit poisoning of primase. Microbiology (Reading, England). 153: 3295-302. PMID 17906129 DOI: 10.1099/Mic.0.2007/007567-0  1
2007 Carroll IM, Andrus JM, Bruno-Bárcena JM, Klaenhammer TR, Hassan HM, Threadgill DS. Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis. American Journal of Physiology. Gastrointestinal and Liver Physiology. 293: G729-38. PMID 17640978 DOI: 10.1152/Ajpgi.00132.2007  1
2007 Pfeiler EA, Azcarate-Peril MA, Klaenhammer TR. Characterization of a novel bile-inducible operon encoding a two-component regulatory system in Lactobacillus acidophilus. Journal of Bacteriology. 189: 4624-34. PMID 17449631 DOI: 10.1128/Jb.00337-07  1
2007 Klaenhammer TR, Azcarate-Peril MA, Altermann E, Barrangou R. Influence of the dairy environment on gene expression and substrate utilization in lactic acid bacteria. The Journal of Nutrition. 137: 748S-50S. PMID 17311971 DOI: 10.1093/Jn/137.3.748S  1
2007 Callanan MJ, Russell WM, Klaenhammer TR. Modification of Lactobacillus beta-glucuronidase activity by random mutagenesis. Gene. 389: 122-7. PMID 17174482 DOI: 10.1016/J.Gene.2006.10.022  1
2006 Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, ... ... Klaenhammer T, et al. Comparative genomics of the lactic acid bacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 15611-6. PMID 17030793 DOI: 10.1073/Pnas.0607117103  1
2006 Engelbrektson AL, Korzenik JR, Sanders ME, Clement BG, Leyer G, Klaenhammer TR, Kitts CL. Analysis of treatment effects on the microbial ecology of the human intestine. Fems Microbiology Ecology. 57: 239-50. PMID 16867142 DOI: 10.1111/J.1574-6941.2006.00112.X  1
2006 Sturino JM, Klaenhammer TR. Engineered bacteriophage-defence systems in bioprocessing. Nature Reviews. Microbiology. 4: 395-404. PMID 16715051 DOI: 10.1038/Nrmicro1393  1
2006 Ventura M, Canchaya C, Bernini V, Altermann E, Barrangou R, McGrath S, Claesson MJ, Li Y, Leahy S, Walker CD, Zink R, Neviani E, Steele J, Broadbent J, Klaenhammer TR, et al. Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Applied and Environmental Microbiology. 72: 3130-46. PMID 16672450 DOI: 10.1128/Aem.72.5.3130-3146.2006  1
2006 Azcarate-Peril MA, Bruno-Bárcena JM, Hassan HM, Klaenhammer TR. Transcriptional and functional analysis of oxalyl-coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes from Lactobacillus acidophilus. Applied and Environmental Microbiology. 72: 1891-9. PMID 16517636 DOI: 10.1128/Aem.72.3.1891-1899.2006  0.64
2006 Barrangou R, Azcarate-Peril MA, Duong T, Conners SB, Kelly RM, Klaenhammer TR. Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 103: 3816-21. PMID 16505367 DOI: 10.1073/Pnas.0511287103  1
2006 Duong T, Barrangou R, Russell WM, Klaenhammer TR. Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 72: 1218-25. PMID 16461669 DOI: 10.1128/Aem.72.2.1218-1225.2006  1
2005 Buck BL, Altermann E, Svingerud T, Klaenhammer TR. Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 71: 8344-51. PMID 16332821 DOI: 10.1128/Aem.71.12.8344-8351.2005  1
2005 Azcarate-Peril MA, McAuliffe O, Altermann E, Lick S, Russell WM, Klaenhammer TR. Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus. Applied and Environmental Microbiology. 71: 5794-804. PMID 16204490 DOI: 10.1128/Aem.71.10.5794-5804.2005  0.64
2005 Klaenhammer TR, Barrangou R, Buck BL, Azcarate-Peril MA, Altermann E. Genomic features of lactic acid bacteria effecting bioprocessing and health. Fems Microbiology Reviews. 29: 393-409. PMID 15964092 DOI: 10.1016/J.Femsre.2005.04.007  1
2005 Altermann E, Klaenhammer TR. PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Bmc Genomics. 6: 60. PMID 15869710 DOI: 10.1186/1471-2164-6-60  0.4
2005 Lu Z, Altermann E, Breidt F, Predki P, Fleming HP, Klaenhammer TR. Sequence analysis of the Lactobacillus plantarum bacteriophage ΦJL-1 Gene. 348: 45-54. PMID 15777728 DOI: 10.1016/J.Gene.2004.12.052  1
2005 Mohamadzadeh M, Olson S, Kalina WV, Ruthel G, Demmin GL, Warfield KL, Bavari S, Klaenhammer TR. Lactobacilli activate human dendritic cells that skew T cells toward T helper 1 polarization. Proceedings of the National Academy of Sciences of the United States of America. 102: 2880-5. PMID 15710900 DOI: 10.1073/Pnas.0500098102  1
2005 Altermann E, Russell WM, Azcarate-Peril MA, Barrangou R, Buck BL, McAuliffe O, Souther N, Dobson A, Duong T, Callanan M, Lick S, Hamrick A, Cano R, Klaenhammer TR. Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proceedings of the National Academy of Sciences of the United States of America. 102: 3906-12. PMID 15671160 DOI: 10.1073/Pnas.0409188102  1
2004 Sturino JM, Klaenhammer TR. Bacteriophage defense systems and strategies for lactic acid bacteria. Advances in Applied Microbiology. 56: 331-78. PMID 15566985 DOI: 10.1016/S0065-2164(04)56011-2  1
2004 Altermann E, Buck LB, Cano R, Klaenhammer TR. Identification and phenotypic characterization of the cell-division protein CdpA. Gene. 342: 189-97. PMID 15527978 DOI: 10.1016/J.Gene.2004.08.004  1
2004 Azcarate-Peril MA, Altermann E, Hoover-Fitzula RL, Cano RJ, Klaenhammer TR. Identification and inactivation of genetic loci involved with Lactobacillus acidophilus acid tolerance. Applied and Environmental Microbiology. 70: 5315-22. PMID 15345415 DOI: 10.1128/Aem.70.9.5315-5322.2004  0.64
2004 Bruno-Bárcena JM, Andrus JM, Libby SL, Klaenhammer TR, Hassan HM. Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity. Applied and Environmental Microbiology. 70: 4702-10. PMID 15294805 DOI: 10.1128/Aem.70.8.4702-4710.2004  1
2004 Yildirim S, Lin W, Hitchins AD, Jaykus LA, Altermann E, Klaenhammer TR, Kathariou S. Epidemic clone I-specific genetic markers in strains of Listeria monocytogenes serotype 4b from foods. Applied and Environmental Microbiology. 70: 4158-64. PMID 15240296 DOI: 10.1128/Aem.70.7.4158-4164.2004  1
2004 Evans MR, Swaminathan B, Graves LM, Altermann E, Klaenhammer TR, Fink RC, Kernodle S, Kathariou S. Genetic markers unique to Listeria monocytogenes serotype 4b differentiate epidemic clone II (hot dog outbreak strains) from other lineages. Applied and Environmental Microbiology. 70: 2383-90. PMID 15066835 DOI: 10.1128/Aem.70.4.2383-2390.2004  1
2004 Sturino JM, Klaenhammer TR. Antisense RNA targeting of primase interferes with bacteriophage replication in Streptococcus thermophilus. Applied and Environmental Microbiology. 70: 1735-43. PMID 15006799 DOI: 10.1128/Aem.70.3.1735-1743.2004  1
2003 Andrus JM, Bowen SW, Klaenhammer TR, Hassan HM. Molecular characterization and functional analysis of the manganese-containing superoxide dismutase gene (sodA) from Streptococcus thermophilus AO54. Archives of Biochemistry and Biophysics. 420: 103-13. PMID 14622980 DOI: 10.1016/J.Abb.2003.09.007  1
2003 Altermann E, Klaenhammer TR. GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes. Omics : a Journal of Integrative Biology. 7: 161-9. PMID 14506845 DOI: 10.1089/153623103322246557  0.4
2003 Reid G, Sanders ME, Gaskins HR, Gibson GR, Mercenier A, Rastall R, Roberfroid M, Rowland I, Cherbut C, Klaenhammer TR. New scientific paradigms for probiotics and prebiotics. Journal of Clinical Gastroenterology. 37: 105-18. PMID 12869879 DOI: 10.1097/00004836-200308000-00004  1
2003 Barrangou R, Altermann E, Hutkins R, Cano R, Klaenhammer TR. Functional and comparative genomic analyses of an operon involved in fructooligosaccharide utilization by Lactobacillus acidophilus. Proceedings of the National Academy of Sciences of the United States of America. 100: 8957-62. PMID 12847288 DOI: 10.1073/Pnas.1332765100  1
2003 Lu Z, Breidt F, Fleming HP, Altermann E, Klaenhammer TR. Isolation and characterization of a Lactobacillus plantarum bacteriophage, ΦJL-1, from a cucumber fermentation International Journal of Food Microbiology. 84: 225-235. PMID 12781945 DOI: 10.1016/S0168-1605(03)00111-9  1
2003 Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SKh, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, ... ... Klaenhammer TR, et al. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Research. 31: 1805-12. PMID 12654995 DOI: 10.1093/Nar/Gkg274  1
2002 Tuler TR, Callanan MJ, Klaenhammer TR. Overexpression of peptidases in Lactococcus and evaluation of their release from leaky cells. Journal of Dairy Science. 85: 2438-50. PMID 12416795 DOI: 10.3168/Jds.S0022-0302(02)74326-9  1
2002 Barrangou R, Yoon SS, Breidt Jr F, Fleming HP, Klaenhammer TR. Characterization of six Leuconostoc fallax bacteriophages isolated from an industrial sauerkraut fermentation. Applied and Environmental Microbiology. 68: 5452-8. PMID 12406737 DOI: 10.1128/Aem.68.11.5452-5458.2002  1
2002 Yother J, Trieu-Cuot P, Klaenhammer TR, De Vos WM. Genetics of streptococci, lactococci, and enterococci: review of the sixth international conference. Journal of Bacteriology. 184: 6085-92. PMID 12399476 DOI: 10.1128/Jb.184.22.6085-6092.2002  1
2002 Klaenhammer T, Altermann E, Arigoni F, Bolotin A, Breidt F, Broadbent J, Cano R, Chaillou S, Deutscher J, Gasson M, van de Guchte M, Guzzo J, Hartke A, Hawkins T, Hols P, et al. Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek. 82: 29-58. PMID 12369195 DOI: 10.1023/A:1020638309912  1
2002 Barrangou R, Yoon SS, Breidt F, Fleming HP, Klaenhammer TR. Identification and characterization of Leuconostoc fallax strains isolated from an industrial sauerkraut fermentation. Applied and Environmental Microbiology. 68: 2877-84. PMID 12039745 DOI: 10.1128/Aem.68.6.2877-2884.2002  1
2002 Yoon SS, Barrangou-Poueys R, Breidt F, Klaenhammer TR, Fleming HP. Isolation and characterization of bacteriophages from fermenting sauerkrautt Applied and Environmental Microbiology. 68: 973-976. PMID 11823247 DOI: 10.1128/Aem.68.2.973-976.2002  1
2002 Sturino JM, Klaenhammer TR. Expression of antisense RNA targeted against Streptococcus thermophilus bacteriophages. Applied and Environmental Microbiology. 68: 588-96. PMID 11823195 DOI: 10.1128/Aem.68.2.588-596.2002  1
2001 Walker SA, Klaenhammer TR. Leaky Lactococcus cultures that externalize enzymes and antigens independently of culture lysis and secretion and export pathways. Applied and Environmental Microbiology. 67: 251-9. PMID 11133453 DOI: 10.1128/Aem.67.1.251-259.2001  1
2000 Walker SA, Klaenhammer TR. An explosive antisense RNA strategy for inhibition of a lactococcal bacteriophage Applied and Environmental Microbiology. 66: 310-319. PMID 10618241 DOI: 10.1128/Aem.66.1.310-319.2000  1
1999 McCormick JK, Klaenhammer TR, Stiles ME. Colicin V can be produced by lactic acid bacteria. Letters in Applied Microbiology. 29: 37-41. PMID 10432630 DOI: 10.1046/J.1365-2672.1999.00571.X  1
1999 Walker DC, Girgis HS, Klaenhammer TR. The groESL chaperone operon of Lactobacillus johnsonii. Applied and Environmental Microbiology. 65: 3033-41. PMID 10388700 DOI: 10.1128/Aem.65.7.3033-3041.1999  1
1998 Dinsmore PK, O'Sullivan DJ, Klaenhammer TR. A leucine repeat motif in AbiA is required for resistance of Lactococcus lactis to phages representing three species Gene. 212: 5-11. PMID 9661658 DOI: 10.1016/S0378-1119(98)00132-2  1
1998 O'Sullivan DJ, Klaenhammer TR. Control of expression of LlaI restriction in Lactococcus lactis Molecular Microbiology. 27: 1009-1020. PMID 9535090 DOI: 10.1046/J.1365-2958.1998.00748.X  1
1998 Walker SA, Dombroski CS, Klaenhammer TR. Common elements regulating gene expression in temperate and lytic bacteriophages of Lactococcus species Applied and Environmental Microbiology. 64: 1147-1152. PMID 9501453 DOI: 10.1128/Aem.64.3.1147-1152.1998  1
1998 Walker SA, Klaenhammer TR. Molecular characterization of a phage-inducible middle promoter and its transcriptional activator from the lactococcal bacteriophage Φ31 Journal of Bacteriology. 180: 921-931. PMID 9473048 DOI: 10.1128/Jb.180.4.921-931.1998  1
1997 Djordjevic GM, O'Sullivan DJ, Walker SA, Conkling MA, Klaenhammer TR. A triggered-suicide system designed as a defense against bacteriophages Journal of Bacteriology. 179: 6741-6748. PMID 9352925 DOI: 10.1128/Jb.179.21.6741-6748.1997  1
1996 O'Sullivan DJ, Walker SA, West SG, Klaenhammer TR. Development of an expression strategy using a lytic phage to trigger explosive plasmid amplification and gene expression Nature Biotechnology. 14: 82-87. PMID 9636317 DOI: 10.1038/Nbt0196-82  1
1996 Walker DC, Aoyama K, Klaenhammer TR. Electrotransformation of lactobacillus acidophilus group A1. Fems Microbiology Letters. 138: 233-7. PMID 9026452 DOI: 10.1111/J.1574-6968.1996.Tb08163.X  1
1996 Sanders ME, Walker DC, Walker KM, Aoyama K, Klaenhammer TR. Performance of commercial cultures in fluid milk applications. Journal of Dairy Science. 79: 943-55. PMID 8827459 DOI: 10.3168/Jds.S0022-0302(96)76445-7  1
1995 Allison GE, Worobo RW, Stiles ME, Klaenhammer TR. Heterologous expression of the lactacin F peptides by Carnobacterium piscicola LV17 Applied and Environmental Microbiology. 61: 1371-1377. PMID 7747957 DOI: 10.1128/Aem.61.4.1371-1377.1995  1
1995 O'Sullivan DJ, Zagula K, Klaenhammer TR. In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030 Journal of Bacteriology. 177: 134-143. PMID 7528201 DOI: 10.1128/Jb.177.1.134-143.1995  1
1994 Walker DC, Klaenhammer TR. Isolation of a novel IS3 group insertion element and construction of an integration vector for Lactobacillus spp. Journal of Bacteriology. 176: 5330-40. PMID 8071209 DOI: 10.1128/Jb.176.17.5330-5340.1994  1
1994 Greene JD, Klaenhammer TR. Factors involved in adherence of lactobacilli to human Caco-2 cells. Applied and Environmental Microbiology. 60: 4487-94. PMID 7811085 DOI: 10.1128/Aem.60.12.4487-4494.1994  1
1994 Moineau S, Pandian S, Klaenhammer TR. Evolution of a lytic bacteriophage via DNA acquisition from the Lactococcus lactis chromosome Applied and Environmental Microbiology. 60: 1832-1841. DOI: 10.1128/Aem.60.6.1832-1841.1994  1
1993 Roy DG, Klaenhammer TR, Hassan HM. Cloning and expression of the manganese superoxide dismutase gene of Escherichia coli in Lactococcus lactis and Lactobacillus gasseri. Molecular & General Genetics : Mgg. 239: 33-40. PMID 8510661 DOI: 10.1007/Bf00281598  1
1993 Polzin KM, Romero D, Shimizu-Kadota M, Klaenhammer TR, McKay LL. Copy number and location of insertion sequences ISS1 and IS981 in lactococci and several other lactic acid bacteria. Journal of Dairy Science. 76: 1243-52. PMID 8389385 DOI: 10.3168/Jds.S0022-0302(93)77453-6  1
1993 Romero DA, Klaenhammer TR. Transposable elements in Lactococci: a review Journal of Dairy Science. 76: 1-19. PMID 8382229 DOI: 10.3168/Jds.S0022-0302(93)77318-X  1
1993 O'Sullivan DJ, Klaenhammer TR. High- and low-copy-number Lactococcus shuttle cloning vectors with features for clone screening Gene. 137: 227-231. PMID 8299952 DOI: 10.1016/0378-1119(93)90011-Q  1
1993 Moineau S, Bernier D, Jobin M, Hebert J, Klaenhammer TR, Pandian S. Production of monoclonal antibodies against the major capsid protein of the Lactococcus bacteriophage ul36 and development of an enzyme-linked immunosorbent assay for direct phage detection in whey and milk Applied and Environmental Microbiology. 59: 2034-2040. DOI: 10.1128/Aem.59.7.2034-2040.1993  1
1993 Moineau S, Durmaz E, Pandian S, Klaenhammer TR. Differentiation of two abortive mechanisms by using monoclonal antibodies directed toward lactococcal bacteriophage capsid proteins Applied and Environmental Microbiology. 59: 208-212. DOI: 10.1128/Aem.59.1.208-212.1993  1
1993 Moineau S, Pandian S, Klaenhammer TR. Restriction/modification systems and restriction endonucleases are more effective on lactococcal bacteriophages that have emerged recently in the dairy industry Applied and Environmental Microbiology. 59: 197-202. DOI: 10.1128/Aem.59.1.197-202.1993  1
1992 Stevens KA, Klapes NA, Sheldon BW, Klaenhammer TR. Antimicrobial action of nisin against Salmonella typhimurium lipopolysaccharide mutants. Applied and Environmental Microbiology. 58: 1786-8. PMID 1622254 DOI: 10.1128/Aem.58.5.1786-1788.1992  1
1992 Foegeding PM, Thomas AB, Pilkington DH, Klaenhammer TR. Enhanced control of Listeria monocytogenes by in situ-produced pediocin during dry fermented sausage production Applied and Environmental Microbiology. 58: 884-890. PMID 1575489 DOI: 10.1128/aem.58.3.884-890.1992  1
1992 Romero DA, Klaenhammer TR. IS946-mediated integration of heterologous DNA into the genome of Lactococcus lactis subsp. lactis Applied and Environmental Microbiology. 58: 699-702. PMID 1319132 DOI: 10.1128/aem.58.2.699-702.1992  1
1991 Stevens KA, Sheldon BW, Klapes NA, Klaenhammer TR. Nisin treatment for inactivation of Salmonella species and other gram-negative bacteria. Applied and Environmental Microbiology. 57: 3613-5. PMID 1785933 DOI: 10.1128/Aem.57.12.3613-3615.1991  1
1991 Romero DA, Klaenhammer TR. Construction of an IS946-based composite transposon in Lactococcus lactis subsp. lactis Journal of Bacteriology. 173: 7599-7606. PMID 1657893 DOI: 10.1128/Jb.173.23.7599-7606.1991  1
1990 Joerger MC, Klaenhammer TR. Cloning, expression, and nucleotide sequence of the Lactobacillus helveticus 481 gene encoding the bacteriocin helveticin J. Journal of Bacteriology. 172: 6339-47. PMID 2228964 DOI: 10.1128/Jb.172.11.6339-6347.1990  1
1990 Romero DA, Klaenhammer TR. Characterization of insertion sequence IS946, an Iso-ISS1 element, isolated from the conjugative lactococcal plasmid pTR2030 Journal of Bacteriology. 172: 4151-4160. PMID 2165471 DOI: 10.1128/Jb.172.8.4151-4160.1990  1
1989 Hill C, Romero DA, McKenney DS, Finer KR, Klaenhammer TR. Localization, cloning, and expression of genetic determinants for bacteriophage resistance (Hsp) from the conjugative plasmid pTR2030 Applied and Environmental Microbiology. 55: 1684-1689. PMID 2504114 DOI: 10.1128/Aem.55.7.1684-1689.1989  1
1986 Joerger MC, Klaenhammer TR. Characterization and purification of helveticin J and evidence for a chromosomally determined bacteriocin produced by Lactobacillus helveticus 481. Journal of Bacteriology. 167: 439-46. PMID 3525512 DOI: 10.1128/Jb.167.2.439-446.1986  1
1984 Barefoot SF, Klaenhammer TR. Purification and characterization of the Lactobacillus acidophilus bacteriocin lactacin B Antimicrobial Agents and Chemotherapy. 26: 328-334. PMID 6439113  1
1983 Barefoot SF, Klaenhammer TR. Detection and activity of lactacin B, a bacteriocin produced by Lactobacillus acidophilus Applied and Environmental Microbiology. 45: 1808-1815. PMID 6410990 DOI: 10.1128/Aem.45.6.1808-1815.1983  1
1980 Klaenhammer TR, Sutherland SM. Detection of plasmid deoxyribonucleic acid in an isolate of Lactobacillus acidophilus Applied and Environmental Microbiology. 39: 671-674. PMID 6770759 DOI: 10.1128/aem.39.3.671-674.1980  1
1978 Klaenhammer TR, McKay LL, Baldwin KA. Improved lysis of group N streptococci for isolation and rapid characterization of plasmid deoxyribonucleic acid. Applied and Environmental Microbiology. 35: 592-600. PMID 416755 DOI: 10.1128/Aem.35.3.592-600.1978  1
1976 Klaenhammer TR, McKay LL. Isolation and examination of transducing bacteriophage particles from Streptococcus lactis C2. Journal of Dairy Science. 59: 396-404. PMID 816826 DOI: 10.3168/Jds.S0022-0302(76)84219-1  1
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