| Year |
Citation |
Score |
| 2020 |
Alhazmi N, Pai CP, Albaqami A, Wang H, Zhao X, Chen M, Hu P, Guo S, Starost K, Hajihassani O, Miyagi M, Kao HY. The promyelocytic leukemia protein isoform PML1 is an oncoprotein and a direct target of the antioxidant sulforaphane (SFN). Biochimica Et Biophysica Acta. Molecular Cell Research. 118707. PMID 32243901 DOI: 10.1016/J.Bbamcr.2020.118707 |
0.358 |
|
| 2020 |
de la Fuente M, Han X, Miyagi M, Nieman MT. Expression and purification of Protease Activated Receptor 4 (PAR4) and analysis with histidine hydrogen deuterium exchange. Biochemistry. PMID 31957446 DOI: 10.1021/Acs.Biochem.9B00987 |
0.36 |
|
| 2017 |
Yamada KD, Omori S, Nishi H, Miyagi M. Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach. Bmc Bioinformatics. 18: 289. PMID 28578658 DOI: 10.1186/S12859-017-1699-4 |
0.371 |
|
| 2015 |
Lodowski DT, Miyagi M. Analysis of conformational changes in rhodopsin by histidine hydrogen-deuterium exchange. Methods in Molecular Biology (Clifton, N.J.). 1271: 123-32. PMID 25697521 DOI: 10.1007/978-1-4939-2330-4_9 |
0.303 |
|
| 2015 |
Vukoti K, Yu X, Sheng Q, Saha S, Feng Z, Hsu AL, Miyagi M. Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans. Journal of Proteome Research. 14: 1483-94. PMID 25686393 DOI: 10.1021/Acs.Jproteome.5B00021 |
0.379 |
|
| 2015 |
Salom D, Cao P, Yuan Y, Miyagi M, Feng Z, Palczewski K. Isotopic labeling of mammalian G protein-coupled receptors heterologously expressed in Caenorhabditis elegans. Analytical Biochemistry. 472: 30-6. PMID 25461480 DOI: 10.1016/J.Ab.2014.11.008 |
0.354 |
|
| 2014 |
Mullangi V, Mamillapalli S, Anderson DJ, Bann JG, Miyagi M. Long-range stabilization of anthrax protective antigen upon binding to CMG2. Biochemistry. 53: 6084-91. PMID 25186975 DOI: 10.1021/Bi500718G |
0.32 |
|
| 2014 |
Guo Y, Miyagi M, Zeng R, Sheng Q. O18Quant: a semiautomatic strategy for quantitative analysis of high-resolution 16O/18O labeled data. Biomed Research International. 2014: 971857. PMID 24901003 DOI: 10.1155/2014/971857 |
0.351 |
|
| 2014 |
Hayashi N, Kuyama H, Nakajima C, Kawahara K, Miyagi M, Nishimura O, Matsuo H, Nakazawa T. Imidazole C-2 hydrogen/deuterium exchange reaction at histidine for probing protein structure and function with matrix-assisted laser desorption ionization mass spectrometry. Biochemistry. 53: 1818-26. PMID 24606199 DOI: 10.1021/Bi401260F |
0.302 |
|
| 2014 |
Chadegani F, Lovell S, Mullangi V, Miyagi M, Battaile KP, Bann JG. (19)F nuclear magnetic resonance and crystallographic studies of 5-fluorotryptophan-labeled anthrax protective antigen and effects of the receptor on stability. Biochemistry. 53: 690-701. PMID 24387629 DOI: 10.1021/Bi401405S |
0.33 |
|
| 2014 |
Nieman MT, Fuente Mdl, Miyagi M. Analysis of Protease Activated Receptor 4 (PAR4) By Histidine Hydrogen Deuterium Exchange Blood. 124: 4166-4166. DOI: 10.1182/Blood.V124.21.4166.4166 |
0.374 |
|
| 2013 |
Sun QA, Wang B, Miyagi M, Hess DT, Stamler JS. Oxygen-coupled redox regulation of the skeletal muscle ryanodine receptor/Ca2+ release channel (RyR1): sites and nature of oxidative modification. The Journal of Biological Chemistry. 288: 22961-71. PMID 23798702 DOI: 10.1074/Jbc.M113.480228 |
0.33 |
|
| 2013 |
Kohno H, Chen Y, Kevany BM, Pearlman E, Miyagi M, Maeda T, Palczewski K, Maeda A. Photoreceptor proteins initiate microglial activation via Toll-like receptor 4 in retinal degeneration mediated by all-trans-retinal. The Journal of Biological Chemistry. 288: 15326-41. PMID 23572532 DOI: 10.1074/Jbc.M112.448712 |
0.324 |
|
| 2012 |
Rao Kadiyala CS, Mullangi V, Zhou X, Vukoti KM, Miyagi M. Rapid and effective removal of perfluorooctanoic acid from proteomics samples. Proteomics. 12: 2271-5. PMID 22685033 DOI: 10.1002/Pmic.201100546 |
0.316 |
|
| 2012 |
Sun QA, Hess DT, Wang B, Miyagi M, Stamler JS. Off-target thiol alkylation by the NADPH oxidase inhibitor 3-benzyl-7-(2-benzoxazolyl)thio-1,2,3-triazolo[4,5-d]pyrimidine (VAS2870). Free Radical Biology & Medicine. 52: 1897-902. PMID 22406319 DOI: 10.1016/J.Freeradbiomed.2012.02.046 |
0.302 |
|
| 2010 |
Gomez JA, Chen J, Ngo J, Hajkova D, Yeh IJ, Gama V, Miyagi M, Matsuyama S. Cell-Penetrating Penta-Peptides (CPP5s): Measurement of Cell Entry and Protein-Transduction Activity. Pharmaceuticals (Basel, Switzerland). 3: 3594-3613. PMID 21359136 DOI: 10.3390/Ph3123594 |
0.364 |
|
| 2010 |
Kadiyala CS, Tomechko SE, Miyagi M. Perfluorooctanoic acid for shotgun proteomics. Plos One. 5: e15332. PMID 21209883 DOI: 10.1371/Journal.Pone.0015332 |
0.383 |
|
| 2010 |
Lodowski DT, Palczewski K, Miyagi M. Conformational changes in the g protein-coupled receptor rhodopsin revealed by histidine hydrogen-deuterium exchange. Biochemistry. 49: 9425-7. PMID 20939497 DOI: 10.1021/Bi101502V |
0.349 |
|
| 2010 |
Orban T, Bereta G, Miyagi M, Wang B, Chance MR, Sousa MC, Palczewski K. Conformational changes in guanylate cyclase-activating protein 1 induced by Ca2+ and N-terminal fatty acid acylation. Structure (London, England : 1993). 18: 116-26. PMID 20152158 DOI: 10.1016/J.Str.2009.11.008 |
0.333 |
|
| 2010 |
Hajkova D, Imanishi Y, Palamalai V, Rao KC, Yuan C, Sheng Q, Tang H, Zeng R, Darrow RM, Organisciak DT, Miyagi M. Proteomic changes in the photoreceptor outer segment upon intense light exposure. Journal of Proteome Research. 9: 1173-81. PMID 20020778 DOI: 10.1021/Pr900819K |
0.725 |
|
| 2010 |
Palamalai V, Miyagi M. Mechanism of glyceraldehyde-3-phosphate dehydrogenase inactivation by tyrosine nitration. Protein Science : a Publication of the Protein Society. 19: 255-62. PMID 20014444 DOI: 10.1002/Pro.311 |
0.722 |
|
| 2010 |
Gomez J, Sun W, Gama V, Hajkova D, Yoshida T, Wu Z, Pink J, Jackson M, Miyagi M, Matsuyama S. Abstract 1023: Cytoplasmic domain of interferon-gamma receptor beta chain (IFNγR2) has an antiapoptotic activity as a Bax inhibitor Cancer Research. 70: 1023-1023. DOI: 10.1158/1538-7445.Am10-1023 |
0.363 |
|
| 2009 |
Gomez JA, Sun W, Gama V, Hajkova D, Yoshida T, Wu Z, Miyagi M, Pink JJ, Jackson MW, Danielpour D, Matsuyama S. The C-terminus of interferon gamma receptor beta chain (IFNgammaR2) has antiapoptotic activity as a Bax inhibitor. Cancer Biology & Therapy. 8: 1771-86. PMID 19657228 DOI: 10.4161/Cbt.8.18.9323 |
0.35 |
|
| 2009 |
Tian G, Zhou Y, Hajkova D, Miyagi M, Dinculescu A, Hauswirth WW, Palczewski K, Geng R, Alagramam KN, Isosomppi J, Sankila EM, Flannery JG, Imanishi Y. Clarin-1, encoded by the Usher Syndrome III causative gene, forms a membranous microdomain: possible role of clarin-1 in organizing the actin cytoskeleton. The Journal of Biological Chemistry. 284: 18980-93. PMID 19423712 DOI: 10.1074/Jbc.M109.003160 |
0.3 |
|
| 2009 |
Kiser JZ, Post M, Wang B, Miyagi M. Streptomyces erythraeus trypsin for proteomics applications. Journal of Proteome Research. 8: 1810-7. PMID 19231893 DOI: 10.1021/Pr8004919 |
0.337 |
|
| 2008 |
Miyagi M, Nakazawa T. Determination of pKa values of individual histidine residues in proteins using mass spectrometry. Analytical Chemistry. 80: 6481-7. PMID 18665614 DOI: 10.1021/Ac8009643 |
0.345 |
|
| 2008 |
Biswas A, Lewis S, Wang B, Miyagi M, Santoshkumar P, Gangadhariah MH, Nagaraj RH. Chemical modulation of the chaperone function of human alphaA-crystallin. Journal of Biochemistry. 144: 21-32. PMID 18344542 DOI: 10.1093/Jb/Mvn037 |
0.31 |
|
| 2008 |
Biswas A, Wang B, Miyagi M, Nagaraj RH. Effect of methylglyoxal modification on stress-induced aggregation of client proteins and their chaperoning by human alphaA-crystallin. The Biochemical Journal. 409: 771-7. PMID 17941823 DOI: 10.1042/Bj20071006 |
0.344 |
|
| 2007 |
Miyagi M, Rao KC. Proteolytic 18O-labeling strategies for quantitative proteomics. Mass Spectrometry Reviews. 26: 121-36. PMID 17086517 DOI: 10.1002/Mas.20116 |
0.371 |
|
| 2006 |
Palamalai V, Darrow RM, Organisciak DT, Miyagi M. Light-induced changes in protein nitration in photoreceptor rod outer segments. Molecular Vision. 12: 1543-51. PMID 17200653 |
0.734 |
|
| 2005 |
Rao KC, Palamalai V, Dunlevy JR, Miyagi M. Peptidyl-Lys metalloendopeptidase-catalyzed 18O labeling for comparative proteomics: application to cytokine/lipolysaccharide-treated human retinal pigment epithelium cell line. Molecular & Cellular Proteomics : McP. 4: 1550-7. PMID 15998935 DOI: 10.1074/Mcp.M500150-Mcp200 |
0.72 |
|
| 2005 |
Rao KC, Carruth RT, Miyagi M. Proteolytic 18O labeling by peptidyl-Lys metalloendopeptidase for comparative proteomics. Journal of Proteome Research. 4: 507-14. PMID 15822928 DOI: 10.1021/Pr049792C |
0.333 |
|
| 2004 |
Qiu Y, Ogawa H, Miyagi M, Misono KS. Constitutive activation and uncoupling of the atrial natriuretic peptide receptor by mutations at the dimer interface. Role of the dimer structure in signalling. The Journal of Biological Chemistry. 279: 6115-23. PMID 14600147 DOI: 10.1074/Jbc.M310225200 |
0.307 |
|
| 2003 |
Gu X, Meer SG, Miyagi M, Rayborn ME, Hollyfield JG, Crabb JW, Salomon RG. Carboxyethylpyrrole protein adducts and autoantibodies, biomarkers for age-related macular degeneration. The Journal of Biological Chemistry. 278: 42027-35. PMID 12923198 DOI: 10.1016/J.Ajo.2004.02.092 |
0.34 |
|
| 2003 |
West KA, Yan L, Shadrach K, Sun J, Hasan A, Miyagi M, Crabb JS, Hollyfield JG, Marmorstein AD, Crabb JW. Protein database, human retinal pigment epithelium. Molecular & Cellular Proteomics : McP. 2: 37-49. PMID 12601081 DOI: 10.1074/Mcp.D200001-Mcp200 |
0.392 |
|
| 2003 |
Sakaguchi H, Miyagi M, Darrow RM, Crabb JS, Hollyfield JG, Organisciak DT, Crabb JW. Intense light exposure changes the crystallin content in retina. Experimental Eye Research. 76: 131-3. PMID 12589783 DOI: 10.1016/S0014-4835(02)00249-X |
0.342 |
|
| 2003 |
Li YF, Kurihara T, Ichiyama S, Miyagi M, Tsunasawa S, Esaki N. Mass spectrometric analysis of the reactions catalyzed by l-2-haloacid dehalogenase mutants and implications for the roles of the catalytic amino acid residues Journal of Molecular Catalysis B-Enzymatic. 23: 337-345. DOI: 10.1016/S1381-1177(03)00097-3 |
0.314 |
|
| 2002 |
Crabb JW, Miyagi M, Gu X, Shadrach K, West KA, Sakaguchi H, Kamei M, Hasan A, Yan L, Rayborn ME, Salomon RG, Hollyfield JG. Drusen proteome analysis: an approach to the etiology of age-related macular degeneration. Proceedings of the National Academy of Sciences of the United States of America. 99: 14682-7. PMID 12391305 DOI: 10.1073/Pnas.222551899 |
0.37 |
|
| 2002 |
Miyagi M, Sakaguchi H, Darrow RM, Yan L, West KA, Aulak KS, Stuehr DJ, Hollyfield JG, Organisciak DT, Crabb JW. Evidence that light modulates protein nitration in rat retina. Molecular & Cellular Proteomics : McP. 1: 293-303. PMID 12096111 DOI: 10.1074/Mcp.M100034-Mcp200 |
0.422 |
|
| 2002 |
Sarkar SN, Miyagi M, Crabb JW, Sen GC. Identification of the substrate-binding sites of 2'-5'-oligoadenylate synthetase. The Journal of Biological Chemistry. 277: 24321-30. PMID 11986302 DOI: 10.1074/Jbc.M110202200 |
0.358 |
|
| 2002 |
Ichiyama S, Kurihara T, Miyagi M, Galkin A, Tsunasawa S, Kawasaki H, Esaki N. Catalysis-linked inactivation of fluoroacetate dehalogenase by ammonia: a novel approach to probe the active-site environment. Journal of Biochemistry. 131: 671-7. PMID 11983073 DOI: 10.1093/Oxfordjournals.Jbchem.A003150 |
0.332 |
|
| 2002 |
Crabb JW, O'Neil J, Miyagi M, West K, Hoff HF. Hydroxynonenal inactivates cathepsin B by forming Michael adducts with active site residues. Protein Science : a Publication of the Protein Society. 11: 831-40. PMID 11910026 DOI: 10.1110/Ps.4400102 |
0.345 |
|
| 2002 |
Hirohata S, Wang LW, Miyagi M, Yan L, Seldin MF, Keene DR, Crabb JW, Apte SS. Punctin, a novel ADAMTS-like molecule, ADAMTSL-1, in extracellular matrix. The Journal of Biological Chemistry. 277: 12182-9. PMID 11805097 DOI: 10.1074/Jbc.M109665200 |
0.318 |
|
| 2001 |
West KA, Yan L, Miyagi M, Crabb JS, Marmorstein AD, Marmorstein L, Crabb JW. Proteome survey of proliferating and differentiating rat RPE-J cells Experimental Eye Research. 73: 479-491. PMID 11825020 DOI: 10.1006/Exer.2001.1058 |
0.372 |
|
| 2001 |
Aulak KS, Miyagi M, Yan L, West KA, Massillon D, Crabb JW, Stuehr DJ. Proteomic method identifies proteins nitrated in vivo during inflammatory challenge Proceedings of the National Academy of Sciences of the United States of America. 98: 12056-12061. PMID 11593016 DOI: 10.1073/Pnas.221269198 |
0.367 |
|
| 2000 |
Pudota BN, Miyagi M, Hallgren KW, West KA, Crabb JW, Misono KS, Berkner KL. Identification of the vitamin K-dependent carboxylase active site: Cys-99 and Cys-450 are required for both epoxidation and carboxylation Proceedings of the National Academy of Sciences of the United States of America. 97: 13033-13038. PMID 11087858 DOI: 10.1073/Pnas.97.24.13033 |
0.344 |
|
| 2000 |
Miyagi M, Zhang X, Misono KS. Glycosylation sites in the atrial natriuretic peptide receptor: oligosaccharide structures are not required for hormone binding. European Journal of Biochemistry. 267: 5758-68. PMID 10971587 DOI: 10.1046/J.1432-1327.2000.01647.X |
0.357 |
|
| 2000 |
Miyagi M, Misono KS. Disulfide bond structure of the atrial natriuretic peptide receptor extracellular domain: conserved disulfide bonds among guanylate cyclase-coupled receptors. Biochimica Et Biophysica Acta. 1478: 30-8. PMID 10719172 DOI: 10.1016/S0167-4838(00)00002-9 |
0.31 |
|
| 1999 |
Nardi-Dei V, Kurihara T, Park C, Miyagi M, Tsunasawa S, Soda K, Esaki N. DL-2-Haloacid dehalogenase from Pseudomonas sp. 113 is a new class of dehalogenase catalyzing hydrolytic dehalogenation not involving enzyme-substrate ester intermediate. The Journal of Biological Chemistry. 274: 20977-81. PMID 10409645 DOI: 10.1074/Jbc.274.30.20977 |
0.334 |
|
| 1998 |
Liu JQ, Kurihara T, Ichiyama S, Miyagi M, Tsunasawa S, Kawasaki H, Soda K, Esaki N. Reaction mechanism of fluoroacetate dehalogenase from Moraxella sp. B. The Journal of Biological Chemistry. 273: 30897-902. PMID 9812982 DOI: 10.1074/Jbc.273.47.30897 |
0.343 |
|
| 1998 |
Miyagi M, Nakao M, Nakazawa T, Kato I, Tsunasawa S. A novel derivatization method with 5-bromonicotinic acid N-hydroxysuccinimide for determination of the amino acid sequences of peptides Rapid Communications in Mass Spectrometry. 12: 603-608. PMID 9621443 DOI: 10.1002/(Sici)1097-0231(19980529)12:10<603::Aid-Rcm204>3.0.Co;2-0 |
0.317 |
|
| 1998 |
Mitta M, Miyagi M, Kato I, Tsunasawa S. Identification of the catalytic triad residues of porcine liver acylamino acid-releasing enzyme. Journal of Biochemistry. 123: 924-931. PMID 9562627 DOI: 10.1093/Oxfordjournals.Jbchem.A022026 |
0.349 |
|
| 1998 |
Koo JC, Lee SY, Chun HJ, Cheong YH, Choi JS, Kawabata S, Miyagi M, Tsunasawa S, Ha KS, Bae DW, Han CD, Lee BL, Cho MJ. Two hevein homologs isolated from the seed of Pharbitis nil L. exhibit potent antifungal activity. Biochimica Et Biophysica Acta. 1382: 80-90. PMID 9507071 DOI: 10.1016/S0167-4838(97)00148-9 |
0.336 |
|
| 1997 |
Tsunasawa S, Izu Y, Miyagi M, Kato I. Methionine Aminopeptidase from the Hyperthermophilic Archaeon Pyrococcus furiosus: Molecular Cloning and Overexperssion in Escherichia coli of the Gene, and Characteristics of the Enzyme. Journal of Biochemistry. 122: 843-850. PMID 9399590 DOI: 10.1093/Oxfordjournals.Jbchem.A021831 |
0.333 |
|
| 1997 |
Liu JQ, Kurihara T, Miyagi M, Tsunasawa S, Nishihara M, Esaki N, Soda K. Paracatalytic inactivation of L-2-haloacid dehalogenase from Pseudomonas sp. YL by hydroxylamine. Evidence for the formation of an ester intermediate. The Journal of Biological Chemistry. 272: 3363-8. PMID 9013577 DOI: 10.1074/Jbc.272.6.3363 |
0.311 |
|
| 1996 |
Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H. Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2. Biochemistry. 35: 6450-6459. PMID 8639592 DOI: 10.1021/Bi9524880 |
0.358 |
|
| 1995 |
Miyagi M, Sakiyama F, Kato I, Tsunasawa S. Complete covalent structure of porcine liver acylamino acid-releasing enzyme and identification of its active site serine residue. Journal of Biochemistry. 118: 771-779. PMID 8576092 DOI: 10.1093/Oxfordjournals.Jbchem.A124979 |
0.361 |
|
| 1995 |
Matsumoto N, Kita K, Kojima S, Yamamoto K, Irimura T, Miyagi M, Tsunasawa S, Toyoshima S. Lymphocyte isoforms of mouse p50 LSP1, which are phosphorylated in mitogen-activated T cells, are formed through alternative splicing and phosphorylation. Journal of Biochemistry. 118: 237-243. PMID 8537319 DOI: 10.1093/Oxfordjournals.Jbchem.A124885 |
0.36 |
|
| 1995 |
Liu J, Kurihara T, Miyagi M, Esaki N, Soda K. Reaction Mechanism of L-2-Haloacid Dehalogenase ofPseudomonassp. YL Journal of Biological Chemistry. 270: 18309-18312. DOI: 10.1074/Jbc.270.31.18309 |
0.337 |
|
| 1994 |
Watanabe Y, Barbashov SF, Komatsu S, Hemmings AM, Miyagi M, Tsunasawa S, Hirano H. A peptide that stimulates phosphorylation of the plant insulin-binding protein. Isolation, primary structure and cDNA cloning. European Journal of Biochemistry. 224: 167-72. PMID 8076638 DOI: 10.1111/J.1432-1033.1994.Tb20008.X |
0.313 |
|
| 1994 |
Ishino Y, Ueno T, Miyagi M, Uemori T, Imamura M, Tsunasawa S, Kato I. Overproduction of Thermus aquaticus DNA polymerase and its structural analysis by ion-spray mass spectrometry. Journal of Biochemistry. 116: 1019-1024. PMID 7896728 DOI: 10.1093/Oxfordjournals.Jbchem.A124622 |
0.306 |
|
| 1992 |
Imamoto N, Matsuoka Y, Kurihara T, Kohno K, Miyagi M, Sakiyama F, Okada Y, Tsunasawa S, Yoneda Y. Antibodies against 70-kD heat shock cognate protein inhibit mediated nuclear import of karyophilic proteins. The Journal of Cell Biology. 119: 1047-61. PMID 1332978 DOI: 10.1083/Jcb.119.5.1047 |
0.333 |
|
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