Stephen E. Diener, Ph.D. - Related publications

Affiliations: 
2005 North Carolina State University, Raleigh, NC 
Area:
Genetics, Botany Biology, Plant Physiology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Safder I, Shao G, Sheng Z, Hu P, Tang S. Genome-wide identification studies - A primer to explore new genes in plant species. Plant Biology (Stuttgart, Germany). PMID 34558163 DOI: 10.1111/plb.13340   
2021 Sharon BM, Hulyalkar NV, Nguyen VH, Zimmern PE, Palmer KL, De Nisco NJ. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies. Journal of Visualized Experiments : Jove. PMID 34487123 DOI: 10.3791/62872   
2021 Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. Insects. 12. PMID 34442314 DOI: 10.3390/insects12080748   
2021 Woodhouse MR, Cannon EK, Portwood JL, Harper LC, Gardiner JM, Schaeffer ML, Andorf CM. A pan-genomic approach to genome databases using maize as a model system. Bmc Plant Biology. 21: 385. PMID 34416864 DOI: 10.1186/s12870-021-03173-5   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Ren F, Wang L, Zhuo W, Lu S, Zhu X, Liu C, Yang M. First complete chloroplast genome of the rare medicinal plant . Mitochondrial Dna. Part B, Resources. 6: 2993-2994. PMID 34568558 DOI: 10.1080/23802359.2021.1975507   
2021 Lee G, Kim MJ, Shin JH. Data on complete genome sequence and annotation of LMG 24727. Data in Brief. 38: 107271. PMID 34430681 DOI: 10.1016/j.dib.2021.107271   
2021 Wijayasekara D, Ali A. Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences acquired by next-generation sequencing. Scientific Reports. 11: 18786. PMID 34552152 DOI: 10.1038/s41598-021-98299-9   
2021 Paterson GK. Genomic epidemiology of the opportunistic pathogen from companion dogs. Journal of Medical Microbiology. 70. PMID 34431760 DOI: 10.1099/jmm.0.001407   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Vega-Estévez S, Armitage A, Bates HJ, Harrison RJ, Buscaino A. The Genome of the CTG(Ser1) Yeast Is Plastic. Mbio. e0187121. PMID 34488452 DOI: 10.1128/mBio.01871-21   
2021 Galvez LC, Koh RBL, Barbosa CFC, Asunto JC, Catalla JL, Atienza RG, Costales KT, Aquino VM, Zhang D. Sequencing and de Novo Assembly of Abaca ( Née) var. Abuab Genome. Genes. 12. PMID 34440376 DOI: 10.3390/genes12081202   
2021 Kang L, Michalak P, Hallerman E, Moncrief ND. A Draft Genome Assembly for the Eastern Fox Squirrel, Sciurus niger. G3 (Bethesda, Md.). PMID 34550334 DOI: 10.1093/g3journal/jkab315   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Shirasawa K, Harada D, Hirakawa H, Isobe S, Kole C. Chromosome-level genome assemblies of over 100 plant species. Breeding Science. 71: 117-124. PMID 34377059 DOI: JST.JSTAGE/jsbbs/20146   
2021 Fan ZF, Yu DY, Ma CL. The complete chloroplast genome sequence of Rolfe, a vulnerable wild moth orchid species (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2903-2905. PMID 34532582 DOI: 10.1080/23802359.2021.1923420   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Alabi N, Wu Y, Bossdorf O, Rieseberg LH, Colautti RI. Genome Report: A draft genome of Alliaria petiolata (garlic mustard) as a model system for invasion genetics. G3 (Bethesda, Md.). PMID 34599816 DOI: 10.1093/g3journal/jkab339   
2021 Dou M, Hao Y, Yang J, Yuan X, Yin X, Jiao Y, Zhao J, Chen T, Wang Y, Xu Y. Genome Sequence Resource for Colletotrichum viniferum, the cause of grapevine ripe rot in China. Molecular Plant-Microbe Interactions : Mpmi. PMID 34569260 DOI: 10.1094/MPMI-04-21-0077-A   
2021 Chen H, Chong X, Zhou Y, Sun L, Zhang F, Lu X, Li N, Zhou T, Li Y. Characterization and phylogenetic analysis of the complete chloroplast genome of , traditional Chinese medicine plant. Mitochondrial Dna. Part B, Resources. 6: 2791-2792. PMID 34514128 DOI: 10.1080/23802359.2021.1967804   
2021 Jiang M, Zhu Y, Wu Q, Zhang H. Complete chloroplast genome of a rare and endangered plant species : genomic features and phylogenetic relationship within Orchidaceae. Mitochondrial Dna. Part B, Resources. 6: 2872-2879. PMID 34532575 DOI: 10.1080/23802359.2021.1972049   
2021 Li Q, Tian S, Yan B, Liu CM, Lam TW, Li R, Luo R. Building a Chinese pan-genome of 486 individuals. Communications Biology. 4: 1016. PMID 34462542 DOI: 10.1038/s42003-021-02556-6   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Wang Y, Niu Y, Qiang Z, Tian Y, Li Y. The complete chloroplast genome of (Rosaceae), a medicinal plant found in northwest China. Mitochondrial Dna. Part B, Resources. 6: 3057-3058. PMID 34589590 DOI: 10.1080/23802359.2021.1978892   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Hao Z, Li Y, Jiang Y, Xu J, Li J, Luo L. Genome Sequence Analysis of the Fungal Pathogen Using Oxford Nanopore Technology. Journal of Fungi (Basel, Switzerland). 7. PMID 34575738 DOI: 10.3390/jof7090699   
2021 Zhuo W, Wang L, Zhu X, Lu S, Ren F. Characterization of the first chloroplast genome of and its phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2991-2992. PMID 34568557 DOI: 10.1080/23802359.2021.1975506   
2021 Kim MS, Lee T, Baek J, Kim JH, Kim C, Jeong SC. Genome assembly of the popular Korean soybean cultivar Hwangkeum. G3 (Bethesda, Md.). 11. PMID 34568925 DOI: 10.1093/g3journal/jkab272   
2021 Manni M, Berkeley MR, Seppey M, Simão FA, Zdobnov EM. BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Molecular Biology and Evolution. PMID 34320186 DOI: 10.1093/molbev/msab199   
2021 Padhi EM, Ng JK, Mehinovic E, Sams EI, Turner TN. ACES: Analysis of Conservation with an Extensive list of Species. Bioinformatics (Oxford, England). PMID 34601580 DOI: 10.1093/bioinformatics/btab684   
2021 Zhang Y, Liu Y, Ge Q, Han K, Shi C, Liu X. The complete chloroplast genome of a shrub species, (Smilacaceae) from Guangdong, China. Mitochondrial Dna. Part B, Resources. 6: 3064-3066. PMID 34595338 DOI: 10.1080/23802359.2021.1979431   
2021 Wang H, Sha X, Li R, Li Y, Khaleque HN, Zhang Y, Bohu T, Bai Z, Zhuang X. Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium EBL0706 as a Strain of . Microorganisms. 9. PMID 34442833 DOI: 10.3390/microorganisms9081754   
2021 Wakao S, Shih PM, Guan K, Schackwitz W, Ye J, Patel D, Shih RM, Dent RM, Chovatia M, Sharma A, Martin J, Wei CL, Niyogi KK. Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. Plos Genetics. 17: e1009725. PMID 34492001 DOI: 10.1371/journal.pgen.1009725   
2021 Li S, Zhao G, Han H, Li Y, Li J, Wang J, Cao G, Li X. Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study. Bmc Genomics. 22: 665. PMID 34521340 DOI: 10.1186/s12864-021-07984-6   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z   
2021 Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. Plos Computational Biology. 17: e1009376. PMID 34491989 DOI: 10.1371/journal.pcbi.1009376   
2021 Zhang F, Wang N, Cheng G, Shu X, Wang T, Zhuang W, Lu R, Wang Z. Comparative Chloroplast Genomes of Four Species (Amaryllidaceae) Provides New Insight into Interspecific Relationship and Phylogeny. Biology. 10. PMID 34439948 DOI: 10.3390/biology10080715   
2021 He J, Zhao C, Guo Y, Zhang H, Zhao B, Chu Z. Completely mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 6: 2708-2709. PMID 34435128 DOI: 10.1080/23802359.2021.1945966   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Sun N, Pei S, He L, Yin C, He RL, Yau SS. Geometric construction of viral genome space and its applications. Computational and Structural Biotechnology Journal. 19: 4226-4234. PMID 34429843 DOI: 10.1016/j.csbj.2021.07.028   
2021 Kim P, Tan H, Liu J, Yang M, Zhou X. FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. Iscience. 24: 103164. PMID 34646994 DOI: 10.1016/j.isci.2021.103164   
2021 Lee D, Song G. FastqCLS: a FASTQ Compressor for Long-read Sequencing via read reordering using a novel scoring model. Bioinformatics (Oxford, England). PMID 34623374 DOI: 10.1093/bioinformatics/btab696   
2021 Zhang Y, Deng C, Yang J, Wang D, Deng G. The complete chloroplast genome of a medicinal plant Burm.f. (Loranthaceae). Mitochondrial Dna. Part B, Resources. 6: 2635-2637. PMID 34435106 DOI: 10.1080/23802359.2021.1962760   
2021 Zang F, Ma Y, Tu X, Huang P, Wu Q, Li Z, Liu T, Lin F, Pei S, Zang D, Zhang X, Zheng Y, Yu Y. A high-quality chromosome-level genome of wild Rosa rugosa. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 34499118 DOI: 10.1093/dnares/dsab017   
2021 Smit SJ, Vivier MA, Young PR. Seeing the Forest through the (Phylogenetic) Trees: Functional Characterisation of Grapevine Terpene Synthase () Paralogues and Orthologues. Plants (Basel, Switzerland). 10. PMID 34451565 DOI: 10.3390/plants10081520   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890