Ranjit Kumar, Ph.D. - Publications

Affiliations: 
2011 Veterinary Medicine Mississippi State University, Starkville, MS, United States 
Area:
Bioinformatics Biology, Biostatistics Biology, Systematic Biology, Microbiology Biology

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hakim JA, Koo H, Kumar R, Lefkowitz E, Morrow C, Powell ML, Watts SA, Bej A. The gut microbiome of the sea urchin, Lytechinus variegatus from their natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles. Fems Microbiology Ecology. PMID 27368709 DOI: 10.1093/femsec/fiw146  0.44
2016 Piyathilake CJ, Ollberding NJ, Kumar R, Macaluso M, Alvarez RD, Morrow CD. Cervical Microbiota Associated with Risk of Higher Grade Cervical Intraepithelial Neoplasia in Women Infected with High-Risk Human Papillomaviruses. Cancer Prevention Research (Philadelphia, Pa.). PMID 26935422 DOI: 10.1158/1940-6207.CAPR-15-0350  0.44
2016 Kumar R, Maynard CL, Eipers P, Goldsmith KT, Ptacek T, Grubbs JA, Dixon P, Howard D, Crossman DK, Crowley MR, Benjamin WH, Lefkowitz EJ, Weaver CT, Rodriguez JM, Morrow CD. Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile. Bmc Microbiology. 16: 5. PMID 26758906 DOI: 10.1186/s12866-015-0622-2  0.44
2015 Edwards RK, Kumar R, Zhi D, Szychowski J, Subramaniam A, Lefkowitz EJ, Morrow C. Gravidas with Class III Obesity: Evaluating the Abdominal Skin Microbiota Above and Below the Panniculus. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 1-21. PMID 26600277 DOI: 10.3109/14767058.2015.1124081  0.44
2015 Hakim JA, Koo H, Dennis LN, Kumar R, Ptacek T, Morrow CD, Lefkowitz EJ, Powell ML, Bej AK, Watts SA. An abundance of Epsilonproteobacteria revealed in the gut microbiome of the laboratory cultured sea urchin, Lytechinus variegatus. Frontiers in Microbiology. 6: 1047. PMID 26528245 DOI: 10.3389/fmicb.2015.01047  0.44
2015 Subramaniam A, Kumar R, Cliver SP, Zhi D, Szychowski JM, Abramovici A, Biggio JR, Lefkowitz EJ, Morrow C, Edwards RK. Vaginal Microbiota in Pregnancy: Evaluation Based on Vaginal Flora, Birth Outcome, and Race. American Journal of Perinatology. PMID 26479170 DOI: 10.1055/s-0035-1565919  0.44
2015 Justice JL, Verhalen B, Kumar R, Lefkowitz EJ, Imperiale MJ, Jiang M. Quantitative Proteomic Analysis of Enriched Nuclear Fractions from BK Polyomavirus-Infected Primary Renal Proximal Tubule Epithelial Cells. Journal of Proteome Research. 14: 4413-24. PMID 26354146 DOI: 10.1021/acs.jproteome.5b00737  0.44
2015 Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL, Salzman NH, Fodor A, Dittel BN. Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages. Journal of Immunology (Baltimore, Md. : 1950). PMID 26324769 DOI: 10.4049/jimmunol.1500153  0.44
2015 Stripling J, Kumar R, Baddley JW, Nellore A, Dixon P, Howard D, Ptacek T, Lefkowitz EJ, Tallaj JA, Benjamin WH, Morrow CD, Rodriguez JM. Loss of Vancomycin-Resistant Enterococcus Fecal Dominance in an Organ Transplant Patient With Clostridium difficile Colitis After Fecal Microbiota Transplant. Open Forum Infectious Diseases. 2: ofv078. PMID 26180828 DOI: 10.1093/ofid/ofv078  0.44
2014 Paul D, Steele C, Donaldson JR, Banes MM, Kumar R, Bridges SM, Arick M, Lawrence ML. Genome comparison of Listeria monocytogenes serotype 4a strain HCC23 with selected lineage I and lineage II L. monocytogenes strains and other Listeria strains. Genomics Data. 2: 219-25. PMID 26484097 DOI: 10.1016/j.gdata.2014.06.010  0.44
2014 Stoll ML, Kumar R, Morrow CD, Lefkowitz EJ, Cui X, Genin A, Cron RQ, Elson CO. Altered microbiota associated with abnormal humoral immune responses to commensal organisms in enthesitis-related arthritis. Arthritis Research & Therapy. 16: 486. PMID 25434931 DOI: 10.1186/s13075-014-0486-0  0.44
2014 Muzny CA, Sunesara IR, Griswold ME, Kumar R, Lefkowitz EJ, Mena LA, Schwebke JR, Martin DH, Swiatlo E. Association between BVAB1 and high Nugent scores among women with bacterial vaginosis. Diagnostic Microbiology and Infectious Disease. 80: 321-3. PMID 25262105 DOI: 10.1016/j.diagmicrobio.2014.09.008  0.44
2014 Kumar R, Eipers P, Little RB, Crowley M, Crossman DK, Lefkowitz EJ, Morrow CD. Getting started with microbiome analysis: sample acquisition to bioinformatics. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 82: 18.8.1-18.8.29. PMID 25042718 DOI: 10.1002/0471142905.hg1808s82  0.44
2014 Paul D, Steele C, Donaldson JR, Banes MM, Kumar R, Bridges SM, Arick M, Lawrence ML. Genome comparison of Listeria monocytogenes serotype 4a strain HCC23 with selected lineage I and lineage II L. monocytogenes strains and other Listeria strains Genomics Data. 2: 219-225. DOI: 10.1016/j.gdata.2014.06.010  0.44
2013 Muzny CA, Sunesara IR, Kumar R, Mena LA, Griswold ME, Martin DH, Lefkowitz EJ, Schwebke JR, Swiatlo E. Characterization of the vaginal microbiota among sexual risk behavior groups of women with bacterial vaginosis. Plos One. 8: e80254. PMID 24236175 DOI: 10.1371/journal.pone.0080254  0.44
2013 Nanduri B, Pendarvis K, Shack LA, Kumar R, Clymer JW, Korvick DL, Burgess SC. Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions. Plos One. 8: e73032. PMID 24058457 DOI: 10.1371/journal.pone.0073032  0.44
2013 Lazrak A, Fu L, Bali V, Bartoszewski R, Rab A, Havasi V, Keiles S, Kappes J, Kumar R, Lefkowitz E, Sorscher EJ, Matalon S, Collawn JF, Bebok Z. The silent codon change I507-ATC->ATT contributes to the severity of the ΔF508 CFTR channel dysfunction. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 4630-45. PMID 23907436 DOI: 10.1096/fj.13-227330  0.44
2013 Hicks C, Kumar R, Pannuti A, Backus K, Brown A, Monico J, Miele L. An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer. Cancer Informatics. 12: 1-20. PMID 23423317 DOI: 10.4137/CIN.S10413  0.44
2012 Reddy JS, Kumar R, Watt JM, Lawrence ML, Burgess SC, Nanduri B. Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213. Bmc Bioinformatics. 13: S4. PMID 23046475 DOI: 10.1186/1471-2105-13-S15-S4  0.44
2012 Hicks C, Kumar R, Pannuti A, Miele L. Integrative Analysis of Response to Tamoxifen Treatment in ER-Positive Breast Cancer Using GWAS Information and Transcription Profiling. Breast Cancer : Basic and Clinical Research. 6: 47-66. PMID 22399860 DOI: 10.4137/BCBCR.S8652  0.44
2012 Kumar R, Lawrence ML, Watt J, Cooksey AM, Burgess SC, Nanduri B. RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336". Plos One. 7: e29435. PMID 22276113 DOI: 10.1371/journal.pone.0029435  0.44
2011 Matsye PD, Kumar R, Hosseini P, Jones CM, Tremblay A, Alkharouf NW, Matthews BF, Klink VP. Mapping cell fate decisions that occur during soybean defense responses. Plant Molecular Biology. 77: 513-28. PMID 21986905 DOI: 10.1007/s11103-011-9828-3  0.44
2011 Kumar R, Burgess SC, Lawrence ML, Nanduri B. TAAPP: Tiling Array Analysis Pipeline for Prokaryotes. Genomics, Proteomics & Bioinformatics. 9: 56-62. PMID 21641563 DOI: 10.1016/S1672-0229(11)60008-9  0.44
2011 Paul D, Kumar R, Nanduri B, French T, Pendarvis K, Brown A, Lawrence ML, Burgess SC. Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions. Plos One. 6: e17111. PMID 21386900 DOI: 10.1371/journal.pone.0017111  0.44
2011 McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H, Manda P, Arick T, Bridges SM, Burgess SC. AgBase: supporting functional modeling in agricultural organisms. Nucleic Acids Research. 39: D497-506. PMID 21075795 DOI: 10.1093/nar/gkq1115  0.44
2010 Kumar R, Nanduri B. HPIDB--a unified resource for host-pathogen interactions. Bmc Bioinformatics. 11: S16. PMID 20946599 DOI: 10.1186/1471-2105-11-S6-S16  0.44
2010 Kumar R, Shah P, Swiatlo E, Burgess SC, Lawrence ML, Nanduri B. Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays. Bmc Genomics. 11: 350. PMID 20525227 DOI: 10.1186/1471-2164-11-350  0.44
2009 Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM. Facilitating functional annotation of chicken microarray data. Bmc Bioinformatics. 10: S2. PMID 19811685 DOI: 10.1186/1471-2105-10-S11-S2  0.44
2009 Pendarvis K, Kumar R, Burgess SC, Nanduri B. An automated proteomic data analysis workflow for mass spectrometry. Bmc Bioinformatics. 10: S17. PMID 19811682 DOI: 10.1186/1471-2105-10-S11-S17  0.44
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