Anne E. Bunner, Ph.D. - Related publications

Affiliations: 
2009 Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Area:
Molecular Biology, Biochemistry, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Tobiasson V, Amunts A. Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation. Elife. 9. PMID 32553108 DOI: 10.7554/eLife.59264   
2020 Zhang X, Ruan C, Zhu H, Li K, Zhang W, Wang K, Hu L, Ye M. A Simplified Thermal Proteome Profiling Approach to Screen Protein Targets of a Ligand. Proteomics. e1900372. PMID 32578935 DOI: 10.1002/pmic.201900372   
2020 Winter DL, Iranmanesh H, Clark DS, Glover DJ. Design of Tunable Protein Interfaces Controlled by Post-Translational Modifications. Acs Synthetic Biology. PMID 32702241 DOI: 10.1021/acssynbio.0c00208   
2020 Bludau I, Heusel M, Frank M, Rosenberger G, Hafen R, Banaei-Esfahani A, van Drogen A, Collins BC, Gstaiger M, Aebersold R. Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes. Nature Protocols. PMID 32690956 DOI: 10.1038/s41596-020-0332-6   
2020 Salih KJ, Duncan O, Li L, Trösch J, Millar AH. The composition and turnover of the Arabidopsis thaliana 80S cytosolic ribosome. The Biochemical Journal. PMID 32744327 DOI: 10.1042/BCJ20200385   
2020 Heidenreich M, Georgeson JM, Locatelli E, Rovigatti L, Nandi SK, Steinberg A, Nadav Y, Shimoni E, Safran SA, Doye JPK, Levy ED. Designer protein assemblies with tunable phase diagrams in living cells. Nature Chemical Biology. PMID 32661377 DOI: 10.1038/s41589-020-0576-z   
2020 Singhal N, Sharma A, Kumari S, Garg A, Rai R, Singh N, Kumar M, Goel M. Biophysical and Biochemical Characterization of Nascent Polypeptide-Associated Complex of and Elucidation of Its Interacting Partners. Frontiers in Microbiology. 11: 915. PMID 32528429 DOI: 10.3389/fmicb.2020.00915   
2020 Chagot ME, Quinternet M, Jacquemin C, Manival X, Gardiennet C. Box C/D snoRNPs: solid-state NMR fingerprint of an early-stage 50 kDa assembly intermediate. Biomolecular Nmr Assignments. 14: 131-140. PMID 32030621 DOI: 10.1007/s12104-020-09933-y   
2020 Schalich KM, Herren AW, Selvaraj V. Analysis of differential strategies to enhance detection of low-abundance proteins in the bovine serum proteome. Animal Science Journal = Nihon Chikusan Gakkaiho. 91: e13388. PMID 32578273 DOI: 10.1111/asj.13388   
2020 Zhao H, Li W, Chu W, Bollard M, Adão R, Schuck P. Quantitative Analysis of Protein Self-Association by Sedimentation Velocity. Current Protocols in Protein Science. 101: e109. PMID 32614509 DOI: 10.1002/cpps.109   
2020 Tsushima M, Sato S, Nakane K, Nakamura H. Target Protein Identification on Photocatalyst-Functionalized Magnetic Affinity Beads. Current Protocols in Protein Science. 101: e108. PMID 32603537 DOI: 10.1002/cpps.108   
2020 Abou-Fadel J, Zhang J. Preparation and Analysis of Protein Extracts to Investigate CCM Pathogenesis. Methods in Molecular Biology (Clifton, N.J.). 2152: 311-324. PMID 32524562 DOI: 10.1007/978-1-0716-0640-7_23   
2020 Caval T, Heck AJR, Reiding KR. Meta-heterogeneity: evaluating and describing the diversity in glycosylation between sites on the same glycoprotein. Molecular & Cellular Proteomics : McP. PMID 32737217 DOI: 10.1074/mcp.R120.002093   
2020 López-Laguna H, Sánchez-García L, Serna N, Voltà-Durán E, Sánchez JM, Sánchez-Chardi A, Unzueta U, Łoś M, Villaverde A, Vázquez E. Engineering Protein Nanoparticles Out from Components of the Human Microbiome. Small (Weinheim An Der Bergstrasse, Germany). e2001885. PMID 32578402 DOI: 10.1002/smll.202001885   
2020 Daniels CM, Kaplan PR, Bishof I, Bradfield C, Tucholski T, Nuccio AG, Manes NP, Katz S, Fraser IDC, Nita-Lazar A. The dynamic ADP-ribosylome, phosphoproteome, and interactome in LPS-activated macrophages. Journal of Proteome Research. PMID 32529831 DOI: 10.1021/acs.jproteome.0c00261   
2020 Nichols C, Ng J, Keshu A, Kelly G, Conte MR, Marber MS, Fraternali F, De Nicola G. Mining the PDB for tractable cases where X-ray crystallography combined with fragment screens can be used to systematically design protein-protein inhibitors. Two test cases illustrated by IL1β-IL1R and p38α-TAB1 complexes. Journal of Medicinal Chemistry. PMID 32543856 DOI: 10.1021/acs.jmedchem.0c00403   
2020 Bui PT, Hoang TX. Protein escape at the ribosomal exit tunnel: Effect of the tunnel shape. The Journal of Chemical Physics. 153: 045105. PMID 32752708 DOI: 10.1063/5.0008292   
2020 Wang C, Li Y, Yan S, Wang H, Shao X, Xiao M, Yang B, Qin G, Kong R, Chen R, Zhang N. Interactome analysis reveals that lncRNA HULC promotes aerobic glycolysis through LDHA and PKM2. Nature Communications. 11: 3162. PMID 32572027 DOI: 10.1038/s41467-020-16966-3   
2020 Subramanian R, Suzuki Y, Tallorin L, Sahu S, Thompson MP, Gianneschi NC, Burkart MD, Tezcan FA. Enzyme-Directed Functionalization of Designed, Two-Dimensional Protein Lattices. Biochemistry. PMID 32706243 DOI: 10.1021/acs.biochem.0c00363   
2020 Ren J, Zhang C, Ji F, Jia L. Characterization and comparison of two peptide-tag specific nanobodies for immunoaffinity chromatography. Journal of Chromatography. A. 1624: 461227. PMID 32540069 DOI: 10.1016/j.chroma.2020.461227   
2020 Lefevre M, Flammang P, Aranko AS, Linder MB, Scheibel T, Humenik M, Leclercq M, Surin M, Tafforeau L, Wattiez R, Leclère P, Hennebert E. Sea star-inspired recombinant adhesive proteins self-assemble and adsorb on surfaces in aqueous environments to form cytocompatible coatings. Acta Biomaterialia. PMID 32502634 DOI: 10.1016/j.actbio.2020.05.036   
2020 Dupree EJ, Jayathirtha M, Yorkey H, Mihasan M, Petre BA, Darie CC. A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of this Field. Proteomes. 8. PMID 32640657 DOI: 10.3390/proteomes8030014   
2020 Cleveland JD, Tucker CL. Photo-SNAP-tag, a light-regulated chemical labeling system. Acs Chemical Biology. PMID 32623878 DOI: 10.1021/acschembio.0c00412   
2020 Parks AR, Escalante-Semerena JC. Modulation of the bacterial CobB sirtuin deacylase activity by N-terminal acetylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571932 DOI: 10.1073/pnas.2005296117   
2020 Yang W, Song A, Ao M, Xu Y, Zhang H. Large-scale site-specific mapping of the O-GalNAc glycoproteome. Nature Protocols. PMID 32681153 DOI: 10.1038/s41596-020-0345-1   
2020 Zhao M, Huang S, Xie H, Wang J, Zhao X, Li M, Zhao M. Construction of specific and reversible nano-receptors for proteins via sequential surface-imprinting strategy. Analytical Chemistry. PMID 32605364 DOI: 10.1021/acs.analchem.0c01366   
2020 Cooley R, Kara N, Hui NS, Tart J, Roustan C, George R, Hancock DC, Binkowski BF, Wood KV, Ismail M, Downward J. Development of a cell-free split-luciferase biochemical assay as a tool for screening for inhibitors of challenging protein-protein interaction targets. Wellcome Open Research. 5: 20. PMID 32587898 DOI: 10.12688/wellcomeopenres.15675.1   
2020 Kanje S, Enstedt H, Dannemeyer M, Uhlén M, Hober S, Tegel H. Improvements of a high-throughput protein purification process using a calcium-dependent setup. Protein Expression and Purification. 105698. PMID 32681960 DOI: 10.1016/j.pep.2020.105698   
2020 Verma M, Dige MS, Gautam D, De S, Rout PK. Functional milk proteome analysis of genetically diverse goats from different agro climatic regions. Journal of Proteomics. 103916. PMID 32711164 DOI: 10.1016/j.jprot.2020.103916   
2020 de Santana Silva LL, de Lima Santos ND, Silva SCC, de Albuquerque Lima T, Coelho LCBB, Zingali RB, do Amaral Ferraz Navarro DM, Napoleão TH, Paiva PMG. Investigation of the ability of the oviposition-stimulant lectin from Moringa oleifera seeds (WSMoL) to bind with membrane proteins present in the legs of Aedes aegypti. International Journal of Biological Macromolecules. PMID 32585265 DOI: 10.1016/j.ijbiomac.2020.06.189   
2020 Xu J, Wu L, Sun Y, Wei Y, Zheng L, Zhang J, Pang Z, Yang Y, Lu Y. Proteomics and bioinformatics analysis of Fasciola hepatica somatic proteome in different growth phases. Parasitology Research. PMID 32757109 DOI: 10.1007/s00436-020-06833-x   
2020 An J, Kim S, Shrinidhi A, Kim J, Banna H, Sung G, Park KM, Kim K. Purification of protein therapeutics via high-affinity supramolecular host-guest interactions. Nature Biomedical Engineering. PMID 32690883 DOI: 10.1038/s41551-020-0589-7   
2020 Müller JB, Geyer PE, Colaço AR, Treit PV, Strauss MT, Oroshi M, Doll S, Virreira Winter S, Bader JM, Köhler N, Theis F, Santos A, Mann M. The proteome landscape of the kingdoms of life. Nature. PMID 32555458 DOI: 10.1038/s41586-020-2402-x   
2020 Jin Y, Yi Y, Yeung B. Mass spectrometric analysis of protein deamidation - a focus on top-down and middle-down mass spectrometry. Methods (San Diego, Calif.). PMID 32791336 DOI: 10.1016/j.ymeth.2020.08.002   
2020 Zhang J, Peng J, Huang Y, Meng L, Li Q, Xiong F, Li X. Identification of Histone-deacetylase (HDAC)-associated Proteins with DNA-Programmed Affinity Labeling. Angewandte Chemie (International Ed. in English). PMID 32613694 DOI: 10.1002/anie.202001205   
2020 Lin D, Zhang Q, Xiao L, Huang Y, Yang Z, Wu Z, Tu Z, Qin W, Chen H, Wu D, Zhang Q, Li S. Effects of ultrasound on functional properties, structure and glycation properties of proteins: a review. Critical Reviews in Food Science and Nutrition. 1-11. PMID 32580562 DOI: 10.1080/10408398.2020.1778632   
2020 Blume JE, Manning WC, Troiano G, Hornburg D, Figa M, Hesterberg L, Platt TL, Zhao X, Cuaresma RA, Everley PA, Ko M, Liou H, Mahoney M, Ferdosi S, Elgierari EM, et al. Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona. Nature Communications. 11: 3662. PMID 32699280 DOI: 10.1038/s41467-020-17033-7   
2020 Gallant JL, Heunis T, Sampson SL, Bitter W. ProVision: A web based platform for rapid analysis of proteomics data processed by MaxQuant. Bioinformatics (Oxford, England). PMID 32638008 DOI: 10.1093/bioinformatics/btaa620   
2020 Antil M, Gouin SG, Gupta V. Truncation of C-Terminal Intrinsically Disordered Region of Mycobacterial Rv1915 Facilitates Production of "Difficult-to-Purify" Recombinant Drug Target. Frontiers in Bioengineering and Biotechnology. 8: 522. PMID 32548107 DOI: 10.3389/fbioe.2020.00522   
2020 Shiraiwa K, Cheng R, Nonaka H, Tamura T, Hamachi I. Chemical Tools for Endogenous Protein Labeling and Profiling. Cell Chemical Biology. PMID 32679042 DOI: 10.1016/j.chembiol.2020.06.016   
2020 Mokhtar NFK, Hashim AM, Hanish I, Zulkarnain A, Raja Nhari RMH, Abdul Sani AA, Abbasiliasi S, Ariff A, Mustafa S, Rahim RA. The Discovery of New Antilisterial Proteins From Kp10 via Genome Mining and Mass Spectrometry. Frontiers in Microbiology. 11: 960. PMID 32714281 DOI: 10.3389/fmicb.2020.00960   
2020 Schmid S, Hugel T. Controlling protein function by fine-tuning conformational flexibility. Elife. 9. PMID 32697684 DOI: 10.7554/eLife.57180   
2020 Faugere J, Gouveia D, Ayciriex S, Chaumot A, Almunia C, François A, Armengaud J, Lemoine J, Geffard O, Degli-Esposti D, Salvador A. High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics. Journal of Proteomics. 103901. PMID 32668291 DOI: 10.1016/j.jprot.2020.103901   
2020 Balotf S, Wilson R, Tegg RS, Nichols DS, Wilson CR. Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen . Molecules (Basel, Switzerland). 25. PMID 32650423 DOI: 10.3390/molecules25143109   
2020 Mansor M, Al-Obaidi JR, Jaafar NN, Ismail IH, Zakaria AF, Abidin MAZ, Selamat J, Radu S, Jambari NN. Optimization of Protein Extraction Method for 2DE Proteomics of Goat's Milk. Molecules (Basel, Switzerland). 25. PMID 32516945 DOI: 10.3390/molecules25112625   
2020 Warsame AO, Michael N, O'Sullivan DM, Tosi P. Identification and quantification of major faba bean seed proteins. Journal of Agricultural and Food Chemistry. PMID 32678595 DOI: 10.1021/acs.jafc.0c02927   
2020 Suzuki-Hatano S, Tsai AC, Daugherty A, Pacak CA. TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis. Journal of Visualized Experiments : Jove. PMID 32568242 DOI: 10.3791/60970   
2020 Landreh M, Sahin C, Gault J, Sadeghi S, Drum CL, Uzdavinys P, Drew D, Allison TM, Degiacomi MT, Marklund EG. Predicting the shapes of protein complexes through collision cross section measurements and database searches. Analytical Chemistry. PMID 32660238 DOI: 10.1021/acs.analchem.0c01940   
2020 Vonshak O, Divon Y, Förste S, Garenne D, Noireaux V, Lipowsky R, Rudorf S, Daube SS, Bar-Ziv RH. Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry. Nature Nanotechnology. PMID 32690886 DOI: 10.1038/s41565-020-0720-7   
2020 Liu B, Marston DJ, Hahn KM. Engineering Optogenetic Protein Analogs. Methods in Molecular Biology (Clifton, N.J.). 2173: 113-126. PMID 32651913 DOI: 10.1007/978-1-0716-0755-8_7