Eric B. Alsop, Ph.D. - Related publications

2014 Geological Sciences Arizona State University, Tempe, AZ, United States 
Geology, Geochemistry, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Wang J, Carper DL, Burdick LH, Shrestha HK, Appidi MR, Abraham PE, Timm CM, Hettich RL, Pelletier DA, Doktycz MJ. Formation, characterization and modeling of emergent synthetic microbial communities. Computational and Structural Biotechnology Journal. 19: 1917-1927. PMID 33995895 DOI: 10.1016/j.csbj.2021.03.034   
2021 Wilson JM, Chamberlain EJ, Erazo N, Carter ML, Bowman JS. Recurrent microbial community types driven by nearshore and seasonal processes in coastal Southern California. Environmental Microbiology. PMID 33928761 DOI: 10.1111/1462-2920.15548   
2021 Estrela S, Sánchez Á, Rebolleda-Gómez M. Multi-Replicated Enrichment Communities as a Model System in Microbial Ecology. Frontiers in Microbiology. 12: 657467. PMID 33897672 DOI: 10.3389/fmicb.2021.657467   
2021 Li Y, Ge Y, Wang J, Shen C, Wang J, Liu YJ. Functional redundancy and specific taxa modulate the contribution of prokaryotic diversity and composition to multifunctionality. Molecular Ecology. PMID 33905157 DOI: 10.1111/mec.15935   
2021 Beaudry MS, Wang J, Kieran TJ, Thomas J, Bayona-Vásquez NJ, Gao B, Devault A, Brunelle B, Lu K, Wang JS, Rhodes OE, Glenn TC. Improved Microbial Community Characterization of 16S rRNA via Metagenome Hybridization Capture Enrichment. Frontiers in Microbiology. 12: 644662. PMID 33986735 DOI: 10.3389/fmicb.2021.644662   
2021 Kumar V, Al Momin S, Kumar VV, Ahmed J, Al-Musallam L, Shajan AB, Al-Aqeel H, Al-Mansour H, Al-Zakri WM. Distribution and diversity of eukaryotic microalgae in Kuwait waters assessed using 18S rRNA gene sequencing. Plos One. 16: e0250645. PMID 33901235 DOI: 10.1371/journal.pone.0250645   
2021 Rojas CA, De Santiago Torio A, Park S, Bosak T, Klepac-Ceraj V. Organic Electron Donors and Terminal Electron Acceptors Structure Anaerobic Microbial Communities and Interactions in a Permanently Stratified Sulfidic Lake. Frontiers in Microbiology. 12: 620424. PMID 33967973 DOI: 10.3389/fmicb.2021.620424   
2021 Averill C, Werbin ZR, Atherton KF, Bhatnagar JM, Dietze MC. Soil microbiome predictability increases with spatial and taxonomic scale. Nature Ecology & Evolution. PMID 33888877 DOI: 10.1038/s41559-021-01445-9   
2021 Dubey M, Hadadi N, Pelet S, Carraro N, Johnson DR, van der Meer JR. Environmental connectivity controls diversity in soil microbial communities. Communications Biology. 4: 492. PMID 33888858 DOI: 10.1038/s42003-021-02023-2   
2021 Jiang SY, Sun BW, Dai HT, Wang RF, Ma DW, Zhu RB. [High-Throughput Sequencing Analysis of Microbial Communities in Summertime Atmospheric Particulate Matter in Hefei City]. Huan Jing Ke Xue= Huanjing Kexue. 42: 2169-2178. PMID 33884786 DOI: 10.13227/j.hjkx.202009012   
2021 Li HQ, Shen YJ, Wang WL, Wang HT, Li H, Su JQ. Soil pH has a stronger effect than arsenic content on shaping plastisphere bacterial communities in soil. Environmental Pollution (Barking, Essex : 1987). 287: 117339. PMID 34000668 DOI: 10.1016/j.envpol.2021.117339   
2021 Parks DH, Rigato F, Vera-Wolf P, Krause L, Hugenholtz P, Tyson GW, Wood DLA. Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome. Frontiers in Microbiology. 12: 643682. PMID 33959106 DOI: 10.3389/fmicb.2021.643682   
2021 Baker BJ, Appler KE, Gong X. New Microbial Biodiversity in Marine Sediments. Annual Review of Marine Science. 13: 161-175. PMID 32746696 DOI: 10.1146/Annurev-Marine-032020-014552   
2021 Yu W, Gao H, Kang H. Ester Linked Fatty Acid (ELFA) method should be used with caution for interpretating soil microbial communities and their relationships with environmental variables in forest soils. Plos One. 16: e0251501. PMID 33970968 DOI: 10.1371/journal.pone.0251501   
2021 Quach NT, Dam HT, Tran DM, Vu THN, Nguyen QV, Nguyen KT, Nguyen QH, Phi CB, Le TH, Chu HH, Thuoc Doan V, Shyu DJH, Kang H, Li WJ, Phi QT. Diversity of microbial community and its metabolic potential for nitrogen and sulfur cycling in sediments of Phu Quoc island, Gulf of Thailand. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. PMID 33856662 DOI: 10.1007/s42770-021-00481-8   
2021 Taguer M, Shapiro BJ, Maurice CF. Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota. Gut Microbes. 13: 1-15. PMID 33779505 DOI: 10.1080/19490976.2021.1903289   
2021 Klasek SA, Brock MT, Morrison HG, Weinig C, Maignien L. Soil Microsite Outweighs Cultivar Genotype Contribution to Rhizobacterial Community Structure. Frontiers in Microbiology. 12: 645784. PMID 33897658 DOI: 10.3389/fmicb.2021.645784   
2021 Duan H, He P, Shao L, Lü F. Functional genome-centric view of the CO-driven anaerobic microbiome. The Isme Journal. PMID 33911204 DOI: 10.1038/s41396-021-00983-1   
2021 Wang X, Pecoraro L. Analysis of Soil Fungal and Bacterial Communities in Tianchi Volcano Crater, Northeast China. Life (Basel, Switzerland). 11. PMID 33810555 DOI: 10.3390/life11040280   
2021 Estrela S, Sanchez-Gorostiaga A, Vila JC, Sanchez A. Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments. Elife. 10. PMID 33877964 DOI: 10.7554/eLife.65948   
2021 Li Y, Chi J, Ao J, Gao X, Liu X, Sun Y, Zhu W. Effects of Different Continuous Cropping Years on Bacterial Community and Diversity of Cucumber Rhizosphere Soil in Solar-Greenhouse. Current Microbiology. PMID 33871692 DOI: 10.1007/s00284-021-02485-x   
2021 Burcham ZM, Weitzel MA, Hodges LD, Deel HL, Metcalf JL. A pilot study characterizing gravesoil bacterial communities a decade after swine decomposition. Forensic Science International. 323: 110782. PMID 33894685 DOI: 10.1016/j.forsciint.2021.110782   
2021 Ankrah NYD, Barker BE, Song J, Wu C, McMullen JG, Douglas AE. Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster. Msystems. 6. PMID 33947801 DOI: 10.1128/mSystems.01369-20   
2021 Melkonian C, Fillinger L, Atashgahi S, da Rocha UN, Kuiper E, Olivier B, Braster M, Gottstein W, Helmus R, Parsons JR, Smidt H, van der Waals M, Gerritse J, Brandt BW, Röling WFM, et al. High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers. Communications Biology. 4: 530. PMID 33953314 DOI: 10.1038/s42003-021-01948-y   
2021 Vermeire ML, Thoresen J, Lennard K, Vikram S, Kirkman K, Swemmer AM, Te Beest M, Siebert F, Gordijn P, Venter Z, Brunel C, Wolfaard G, Krumins JA, Cramer MD, Hawkins HJ. Fire and herbivory drive fungal and bacterial communities through distinct above- and belowground mechanisms. The Science of the Total Environment. 785: 147189. PMID 33933764 DOI: 10.1016/j.scitotenv.2021.147189   
2021 Mukhopadhyay M, Mitra AK, Choudhury SS, Ganguli S. Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India. Data in Brief. 36: 107041. PMID 33981820 DOI: 10.1016/j.dib.2021.107041   
2021 Raes EJ, Karsh K, Sow SLS, Ostrowski M, Brown MV, van de Kamp J, Franco-Santos RM, Bodrossy L, Waite AM. Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries. Nature Communications. 12: 2213. PMID 33850115 DOI: 10.1038/s41467-021-22409-4   
2021 Yanuka-Golub K, Dubinsky V, Korenblum E, Reshef L, Ofek-Lalzar M, Rishpon J, Gophna U. Anode Surface Bioaugmentation Enhances Deterministic Biofilm Assembly in Microbial Fuel Cells. Mbio. 12. PMID 33653887 DOI: 10.1128/mBio.03629-20   
2021 Gao Y, Xu X, Ding J, Bao F, De Costa YG, Zhuang W, Wu B. The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in A Desert Ecosystem. Microorganisms. 9. PMID 33946616 DOI: 10.3390/microorganisms9050981   
2021 Bôto ML, Magalhães C, Perdigão R, Alexandrino DAM, Fernandes JP, Bernabeu AM, Ramos S, Carvalho MF, Semedo M, LaRoche J, Almeida CMR, Mucha AP. Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast. Frontiers in Microbiology. 12: 633659. PMID 33967978 DOI: 10.3389/fmicb.2021.633659   
2021 Li HQ, Li H, Zhou XY, Shen YJ, Su JQ. Distinct patterns of abundant and rare subcommunities in paddy soil during wetting-drying cycles. The Science of the Total Environment. 785: 147298. PMID 33940401 DOI: 10.1016/j.scitotenv.2021.147298   
2021 Steven B, Phillips ML, Belnap J, Gallegos-Graves V, Kuske CR, Reed SC. Resistance, Resilience, and Recovery of Dryland Soil Bacterial Communities Across Multiple Disturbances. Frontiers in Microbiology. 12: 648455. PMID 33959111 DOI: 10.3389/fmicb.2021.648455   
2021 Diego D, Hannisdal B, Dahle H. On how the power supply shapes microbial survival. Mathematical Biosciences. 108615. PMID 33857526 DOI: 10.1016/j.mbs.2021.108615   
2021 Zhang X, Hu W, Jin X, Chen T, Niu Y. Diversity of soil nitrogen-fixing bacteria in the rhizosphere and non-rhizophere soils of Ebinur Lake Wetland. Archives of Microbiology. PMID 34021386 DOI: 10.1007/s00203-021-02363-x   
2021 Li W, Li X. Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings. Environmental Microbiome. 16: 9. PMID 33926573 DOI: 10.1186/s40793-021-00380-3   
2021 Dove NC, Torn MS, Hart SC, Taş N. Metabolic capabilities mute positive response to direct and indirect impacts of warming throughout the soil profile. Nature Communications. 12: 2089. PMID 33828081 DOI: 10.1038/s41467-021-22408-5   
2021 Lambert S, Lozano JC, Bouget FY, Galand PE. Seasonal marine microorganisms change neighbours under contrasting environmental conditions. Environmental Microbiology. PMID 33760330 DOI: 10.1111/1462-2920.15482   
2021 Coclet C, Garnier C, D'Onofrio S, Durrieu G, Pasero E, Le Poupon C, Omanović D, Mullot JU, Misson B, Briand JF. Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area. Frontiers in Microbiology. 12: 589948. PMID 33679628 DOI: 10.3389/fmicb.2021.589948   
2021 Yang Y, Chen J, Chen X, Jiang Q, Liu Y, Xie S. Cyanobacterial bloom induces structural and functional succession of microbial communities in eutrophic lake sediments. Environmental Pollution (Barking, Essex : 1987). 284: 117157. PMID 33892464 DOI: 10.1016/j.envpol.2021.117157   
2021 Wei X, Ge T, Wu C, Wang S, Mason-Jones K, Li Y, Zhu Z, Hu Y, Liang C, Shen J, Wu J, Kuzyakov Y. T4-like Phages Reveal the Potential Role of Viruses in Soil Organic Matter Mineralization. Environmental Science & Technology. PMID 33852292 DOI: 10.1021/acs.est.0c06014   
2021 Chun SJ, Cui Y, Baek SH, Ahn CY, Oh HM. Seasonal succession of microbes in different size-fractions and their modular structures determined by both macro- and micro-environmental filtering in dynamic coastal waters. The Science of the Total Environment. 784: 147046. PMID 33894601 DOI: 10.1016/j.scitotenv.2021.147046   
2021 Arias-Orozco P, Yi Y, Kuipers OP. Draft Genome Sequences of Four Bacterial Strains of Heterotrophic Alteromonas macleodii and , Isolated from a Nonaxenic Culture of Two Marine Strains. Microbiology Resource Announcements. 10. PMID 33986074 DOI: 10.1128/MRA.00116-21   
2021 Acharya M, Ashworth AJ, Yang Y, Burke JM, Lee JA, Sharma Acharya R. Soil microbial diversity in organic and non-organic pasture systems. Peerj. 9: e11184. PMID 33981494 DOI: 10.7717/peerj.11184   
2021 Zeng S, Wei D, Hou D, Wang H, Liu J, Weng S, He J, Huang Z. Sediment microbiota in polyculture of shrimp and fish pattern is distinctive from those in monoculture intensive shrimp or fish ponds. The Science of the Total Environment. 787: 147594. PMID 33989866 DOI: 10.1016/j.scitotenv.2021.147594   
2021 Patwardhan S, Smedile F, Giovannelli D, Vetriani C. Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent. Frontiers in Microbiology. 12: 638300. PMID 33889140 DOI: 10.3389/fmicb.2021.638300   
2021 Beghini F, McIver LJ, Blanco-Míguez A, Dubois L, Asnicar F, Maharjan S, Mailyan A, Manghi P, Scholz M, Thomas AM, Valles-Colomer M, Weingart G, Zhang Y, Zolfo M, Huttenhower C, et al. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. Elife. 10. PMID 33944776 DOI: 10.7554/eLife.65088   
2021 Heal KR, Durham BP, Boysen AK, Carlson LT, Qin W, Ribalet F, White AE, Bundy RM, Armbrust EV, Ingalls AE. Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition. Msystems. 6. PMID 33947800 DOI: 10.1128/mSystems.01334-20   
2021 Jiang C, Peces M, Andersen MH, Kucheryavskiy S, Nierychlo M, Yashiro E, Andersen KS, Kirkegaard RH, Hao L, Høgh J, Hansen AA, Dueholm MS, Nielsen PH. Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure and key drivers. Water Research. 193: 116871. PMID 33578056 DOI: 10.1016/j.watres.2021.116871   
2021 Wu X, Peng J, Liu P, Bei Q, Rensing C, Li Y, Yuan H, Liesack W, Zhang F, Cui Z. Metagenomic insights into nitrogen and phosphorus cycling at the soil aggregate scale driven by organic material amendments. The Science of the Total Environment. 785: 147329. PMID 33940418 DOI: 10.1016/j.scitotenv.2021.147329   
2021 Starke R, Siles JA, Fernandes MLP, Schallert K, Benndorf D, Plaza C, Jehmlich N, Delgado-Baquerizo M, Bastida F. The structure and function of soil archaea across biomes. Journal of Proteomics. 237: 104147. PMID 33582288 DOI: 10.1016/j.jprot.2021.104147