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Ryan S. McClure, Ph.D. - Publications

Affiliations: 
2013 Microbiology Boston University, Boston, MA, United States 
Area:
Microbiology Biology
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 McClure R, Naylor D, Farris Y, Davison M, Fansler SJ, Hofmockel KS, Jansson JK. Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome. Frontiers in Microbiology. 11: 1987. PMID 32983014 DOI: 10.3389/Fmicb.2020.01987  0.326
2020 Naylor D, Fansler S, Brislawn C, Nelson WC, Hofmockel KS, Jansson JK, McClure R. Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules. Mbio. 11. PMID 32636252 DOI: 10.1128/Mbio.01349-20  0.334
2020 McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations. Scientific Reports. 10: 10882. PMID 32616808 DOI: 10.1038/S41598-020-67878-7  0.377
2020 Berg G, Rybakova D, Fischer D, Cernava T, Vergès MC, Charles T, Chen X, Cocolin L, Eversole K, Corral GH, Kazou M, Kinkel L, Lange L, Lima N, Loy A, ... ... McClure R, et al. Microbiome definition re-visited: old concepts and new challenges. Microbiome. 8: 103. PMID 32605663 DOI: 10.1186/S40168-020-00875-0  0.322
2019 McClure RS, Wendler JP, Adkins JN, Swanstrom J, Baric R, Kaiser BLD, Oxford KL, Waters KM, McDermott JE. Unified feature association networks through integration of transcriptomic and proteomic data. Plos Computational Biology. 15: e1007241. PMID 31527878 DOI: 10.1371/Journal.Pcbi.1007241  0.312
2019 Shankar P, Geier MC, Truong L, McClure RS, Pande P, Waters KM, Tanguay RL. Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard. International Journal of Molecular Sciences. 20. PMID 31130617 DOI: 10.3390/Ijms20102570  0.32
2019 McClure R, Genco CA. Strategies for Global RNA Sequencing of the Human Pathogen Neisseria gonorrhoeae. Methods in Molecular Biology (Clifton, N.J.). 1997: 163-183. PMID 31119624 DOI: 10.1007/978-1-4939-9496-0_11  0.365
2019 McClure RS. Computational Analysis of Interactions of the Oral Microbiota Current Oral Health Reports. 6: 138-144. DOI: 10.1007/S40496-019-0214-6  0.341
2018 Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE. Improving network inference algorithms using resampling methods. Bmc Bioinformatics. 19: 376. PMID 30314469 DOI: 10.1186/S12859-018-2402-0  0.306
2018 McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS. Species-specific transcriptomic network inference of interspecies interactions. The Isme Journal. PMID 29795448 DOI: 10.1038/S41396-018-0145-6  0.397
2018 Khan N, Maezato Y, McClure RS, Brislawn CJ, Mobberley JM, Isern N, Chrisler WB, Markillie LM, Barney BM, Song HS, Nelson WC, Bernstein HC. Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture. Scientific Reports. 8: 297. PMID 29321512 DOI: 10.1038/S41598-017-18630-1  0.336
2016 McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS. Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002. Nucleic Acids Research. PMID 27568004 DOI: 10.1093/Nar/Gkw737  0.403
2016 Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS. Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth. Mbio. 7. PMID 27460798 DOI: 10.1128/Mbio.00949-16  0.318
2016 Yu C, McClure R, Nudel K, Daou N, Genco CA. Characterization of the Neisseria gonorrhoeae Iron and Fur Regulatory Network. Journal of Bacteriology. PMID 27246574 DOI: 10.1128/Jb.00166-16  0.341
2015 McClure R, Nudel K, Massari P, Tjaden B, Su X, Rice PA, Genco CA. The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women. Plos One. 10: e0133982. PMID 26244506 DOI: 10.1371/Journal.Pone.0133982  0.35
2015 Song HS, McClure RS, Bernstein HC, Overall CC, Hill EA, Beliaev AS. Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality. Life (Basel, Switzerland). 5: 1127-40. PMID 25826650 DOI: 10.3390/Life5021127  0.389
2014 McClure R, Tjaden B, Genco C. Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions. Frontiers in Microbiology. 5: 456. PMID 25221548 DOI: 10.3389/Fmicb.2014.00456  0.373
2013 Daou N, Yu C, McClure R, Gudino C, Reed GW, Genco CA. Neisseria prophage repressor implicated in gonococcal pathogenesis. Infection and Immunity. 81: 3652-61. PMID 23876804 DOI: 10.1128/Iai.00298-13  0.348
2013 McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B. Computational analysis of bacterial RNA-Seq data. Nucleic Acids Research. 41: e140. PMID 23716638 DOI: 10.1093/Nar/Gkt444  0.314
2010 Mellin JR, McClure R, Lopez D, Green O, Reinhard B, Genco C. Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis. Microbiology (Reading, England). 156: 2316-26. PMID 20430815 DOI: 10.1099/Mic.0.039040-0  0.328
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