Frank O. Aylward, Ph.D. - Publications

Affiliations: 
2013 Microbiology ALS University of Wisconsin, Madison, Madison, WI 
Area:
Microbiology Biology, Ecology Biology, Evolution and Development Biology

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Aylward FO, Moniruzzaman M, Ha AD, Koonin EV. A phylogenomic framework for charting the diversity and evolution of giant viruses. Plos Biology. 19: e3001430. PMID 34705818 DOI: 10.1371/journal.pbio.3001430  1
2021 Osburn ED, Badgley BD, Strahm BD, Aylward FO, Barrett JE. Emergent properties of microbial communities drive accelerated biogeochemical cycling in disturbed temperate forests. Ecology. e03553. PMID 34622940 DOI: 10.1002/ecy.3553  1
2021 Martinez-Gutierrez CA, Aylward FO. Phylogenetic Signal, Congruence, and Uncertainty across Bacteria and Archaea. Molecular Biology and Evolution. PMID 34436605 DOI: 10.1093/molbev/msab254  1
2021 Osburn ED, Badgley BD, Aylward FO, Barrett JE. Historical forest disturbance mediates soil microbial community responses to drought. Environmental Microbiology. PMID 34347364 DOI: 10.1111/1462-2920.15706  1
2021 Ha AD, Moniruzzaman M, Aylward FO. High Transcriptional Activity and Diverse Functional Repertoires of Hundreds of Giant Viruses in a Coastal Marine System. Msystems. e0029321. PMID 34254826 DOI: 10.1128/mSystems.00293-21  1
2021 Boysen AK, Carlson LT, Durham BP, Groussman RD, Aylward FO, Ribalet F, Heal KR, White AE, DeLong EF, Armbrust EV, Ingalls AE. Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean. Msystems. 6. PMID 33947808 DOI: 10.1128/mSystems.00896-20  1
2021 Karki S, Moniruzzaman M, Aylward FO. Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family . Frontiers in Microbiology. 12: 657471. PMID 33790885 DOI: 10.3389/fmicb.2021.657471  1
2021 Aylward FO, Moniruzzaman M. ViralRecall-A Flexible Command-Line Tool for the Detection of Giant Virus Signatures in 'Omic Data. Viruses. 13. PMID 33498458 DOI: 10.3390/v13020150  1
2020 Moniruzzaman M, Weinheimer AR, Martinez-Gutierrez CA, Aylward FO. Widespread endogenization of giant viruses shapes genomes of green algae. Nature. PMID 33208937 DOI: 10.1038/s41586-020-2924-2  1
2020 Aylward FO. The coevolutionary history of the microbial planet. Environmental Microbiology Reports. PMID 32939975 DOI: 10.1111/1758-2229.12888  0.01
2020 Weinheimer AR, Aylward FO. A distinct lineage of Caudovirales that encodes a deeply branching multi-subunit RNA polymerase. Nature Communications. 11: 4506. PMID 32908149 DOI: 10.1038/S41467-020-18281-3  1
2020 Aylward FO, Santoro AE. Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean. Msystems. 5. PMID 32546674 DOI: 10.1128/mSystems.00415-20  0.01
2020 Moniruzzaman M, Martinez-Gutierrez CA, Weinheimer AR, Aylward FO. Dynamic genome evolution and complex virocell metabolism of globally-distributed giant viruses. Nature Communications. 11: 1710. PMID 32249765 DOI: 10.1038/S41467-020-15507-2  1
2019 Osburn ED, McBride SG, Aylward FO, Badgley BD, Strahm BD, Knoepp JD, Barrett JE. Soil Bacterial and Fungal Communities Exhibit Distinct Long-Term Responses to Disturbance in Temperate Forests. Frontiers in Microbiology. 10: 2872. PMID 31921050 DOI: 10.3389/Fmicb.2019.02872  0.01
2019 Martinez-Gutierrez CA, Aylward FO. Strong Purifying Selection is Associated with Genome Streamlining in Epipelagic Marinimicrobia. Genome Biology and Evolution. PMID 31539038 DOI: 10.1093/Gbe/Evz201  1
2019 Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The Isme Journal. PMID 31320727 DOI: 10.1038/S41396-019-0472-2  1
2018 Getz EW, Tithi SS, Zhang L, Aylward FO. Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum. Mbio. 9. PMID 30228235 DOI: 10.1128/Mbio.01089-18  1
2018 Harke MJ, Frischkorn KR, Haley ST, Aylward FO, Zehr JP, Dyhrman ST. Periodic and coordinated gene expression between a diazotroph and its diatom host. The Isme Journal. PMID 30116042 DOI: 10.1038/S41396-018-0262-2  0.04
2018 Tithi SS, Aylward FO, Jensen RV, Zhang L. FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data. Peerj. 6: e4227. PMID 29340239 DOI: 10.7717/Peerj.4227  1
2017 Luo E, Aylward FO, Mende DR, DeLong EF. Bacteriophage Distributions and Temporal Variability in the Ocean's Interior. Mbio. 8. PMID 29184020 DOI: 10.1128/Mbio.01903-17  1
2017 Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF. Diel cycling and long-term persistence of viruses in the ocean's euphotic zone. Proceedings of the National Academy of Sciences of the United States of America. 114: 11446-11451. PMID 29073070 DOI: 10.1073/Pnas.1714821114  1
2017 Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF. Environmental drivers of a microbial genomic transition zone in the ocean's interior. Nature Microbiology. PMID 28808230 DOI: 10.1038/S41564-017-0008-3  1
2017 Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, et al. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera. Nature Microbiology. 2: 17118. PMID 28758990 DOI: 10.1038/Nmicrobiol.2017.118  1
2017 Gontang EA, Aylward FO, Carlos C, Glavina Del Rio T, Chovatia M, Fern A, Lo CC, Malfatti SA, Tringe SG, Currie CR, Kolter R. Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. Plos One. 12: e0177189. PMID 28545131 DOI: 10.1371/Journal.Pone.0177189  1
2016 Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF. Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies. Frontiers in Microbiology. 7: 143. PMID 26904016 DOI: 10.3389/Fmicb.2016.00143  1
2015 Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF. Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre. The Isme Journal. PMID 26645474 DOI: 10.1038/Ismej.2015.221  1
2015 Aylward FO, Khadempour L, Tremmel DM, McDonald BR, Nicora CD, Wu S, Moore RJ, Orton DJ, Monroe ME, Piehowski PD, Purvine SO, Smith RD, Lipton MS, Burnum-Johnson KE, Currie CR. Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. Plos One. 10: e0139151. PMID 26398520 DOI: 10.1371/journal.pone.0139151  1
2015 Aylward FO, Khadempour L, Tremmel DM, McDonald BR, Nicora CD, Wu S, Moore RJ, Orton DJ, Monroe ME, Piehowski PD, Purvine SO, Smith RD, Lipton MS, Burnum-Johnson KE, Currie CR. Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. Plos One. 10: e0134752. PMID 26317212 DOI: 10.1371/Journal.Pone.0134752  1
2015 Spero MA, Aylward FO, Currie CR, Donohue TJ. Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. Mbio. 6. PMID 25873378 DOI: 10.1128/Mbio.00389-15  1
2015 Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences of the United States of America. 112: 5443-8. PMID 25775583 DOI: 10.1073/Pnas.1502883112  1
2014 Aylward FO, Suen G, Biedermann PH, Adams AS, Scott JJ, Malfatti SA, Glavina del Rio T, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR. Convergent bacterial microbiotas in the fungal agricultural systems of insects. Mbio. 5: e02077. PMID 25406380 DOI: 10.1128/Mbio.02077-14  1
2014 Huang EL, Aylward FO, Kim YM, Webb-Robertson BJ, Nicora CD, Hu Z, Metz TO, Lipton MS, Smith RD, Currie CR, Burnum-Johnson KE. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environmental Microbiology Reports. 6: 389-95. PMID 24992538 DOI: 10.1111/1758-2229.12163  1
2014 Aylward FO, Suen G, Biedermann PHW, Adams AS, Scott JJ, Malfatti SA, Del Rio TG, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR. Convergent bacterial microbiotas in the fungal agricultural systems of insects Mbio. 5. DOI: 10.1128/mBio.02077-14  1
2013 Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD, Malfatti SA, Monroe ME, Purvine SO, Goodwin LA, Smith RD, et al. Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Applied and Environmental Microbiology. 79: 3770-8. PMID 23584789 DOI: 10.1128/Aem.03833-12  1
2013 Aylward FO, McDonald BR, Adams SM, Valenzuela A, Schmidt RA, Goodwin LA, Woyke T, Currie CR, Suen G, Poulsen M. Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. Applied and Environmental Microbiology. 79: 3724-33. PMID 23563954 DOI: 10.1128/Aem.00518-13  1
2013 Adams AS, Aylward FO, Adams SM, Erbilgin N, Aukema BH, Currie CR, Suen G, Raffa KF. Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism. Applied and Environmental Microbiology. 79: 3468-75. PMID 23542624 DOI: 10.1128/Aem.00068-13  1
2013 Aylward FO, Tremmel DM, Starrett GJ, Bruce DC, Chain P, Chen A, Davenport KW, Detter C, Han CS, Han J, Huntemann M, Ivanova NN, Kyrpides NC, Markowitz V, Mavrommatis K, et al. Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announcements. 1: e0023912. PMID 23516234 DOI: 10.1128/Genomea.00239-12  1
2013 Aylward FO, Tremmel DM, Bruce DC, Chain P, Chen A, Walston Davenport K, Detter C, Han CS, Han J, Huntemann M, Ivanova NN, Kyrpides NC, Markowitz V, Mavrommatis K, Nolan M, et al. Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announcements. 1. PMID 23469353 DOI: 10.1128/Genomea.00238-12  1
2013 Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ. The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov. Plos One. 8: e53954. PMID 23342046 DOI: 10.1371/Journal.Pone.0053954  1
2012 Aylward FO, Currie CR, Suen G. The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants. Insects. 3: 41-61. PMID 26467948 DOI: 10.3390/Insects3010041  1
2012 Aylward FO, Burnum KE, Scott JJ, Suen G, Tringe SG, Adams SM, Barry KW, Nicora CD, Piehowski PD, Purvine SO, Starrett GJ, Goodwin LA, Smith RD, Lipton MS, Currie CR. Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. The Isme Journal. 6: 1688-701. PMID 22378535 DOI: 10.1038/Ismej.2012.10  1
2011 Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, Drinkwater C, Ivanova NN, Mikhailova N, Chertkov O, Goodwin LA, Currie CR, Mead D, Brumm PJ. The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. Plos One. 6: e18814. PMID 21526192 DOI: 10.1371/Journal.Pone.0018814  1
2011 Suen G, Scott JJ, Aylward FO, Currie CR. The Microbiome of Leaf-Cutter Ant Fungus Gardens Handbook of Molecular Microbial Ecology Ii: Metagenomics in Different Habitats. 367-379. DOI: 10.1002/9781118010549.ch36  1
2010 Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, Pinto-Tomás AA, Foster CE, Pauly M, Weimer PJ, Barry KW, Goodwin LA, Bouffard P, Li L, Osterberger J, Harkins TT, et al. An insect herbivore microbiome with high plant biomass-degrading capacity. Plos Genetics. 6: e1001129. PMID 20885794 DOI: 10.1371/Journal.Pgen.1001129  1
2009 Herron MD, Hackett JD, Aylward FO, Michod RE. Triassic origin and early radiation of multicellular volvocine algae. Proceedings of the National Academy of Sciences of the United States of America. 106: 3254-8. PMID 19223580 DOI: 10.1073/Pnas.0811205106  1
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