Irina Artsimovitch - Publications

Microbiology Ohio State University, Columbus, Columbus, OH 
Biochemistry, Microbiology Biology

137 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Said N, Finazzo M, Hilal T, Wang B, Selinger TL, Gjorgjevikj D, Artsimovitch I, Wahl MC. Sm-like protein Rof inhibits transcription termination factor ρ by binding site obstruction and conformational insulation. Nature Communications. 15: 3186. PMID 38622114 DOI: 10.1038/s41467-024-47439-6  0.543
2024 Qian J, Cartee A, Xu W, Yan Y, Wang B, Artsimovitch I, Dunlap D, Finzi L. Reciprocating RNA Polymerase batters through roadblocks. Nature Communications. 15: 3193. PMID 38609371 DOI: 10.1038/s41467-024-47531-x  0.509
2024 Zuber PK, Said N, Hilal T, Wang B, Loll B, González-Higueras J, Ramírez-Sarmiento CA, Belogurov GA, Artsimovitch I, Wahl MC, Knauer SH. Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nature Communications. 15: 3040. PMID 38589445 DOI: 10.1038/s41467-024-47368-4  0.545
2023 Mani G, El-Kamand S, Wang B, Baker DL, Ataide SF, Artsimovitch I, Cubeddu L, Gamsjaeger R. A structural analysis of the nsp9 protein from the coronavirus MERS CoV reveals a conserved RNA binding interface. Proteins. PMID 37929701 DOI: 10.1002/prot.26630  0.451
2023 Said N, Finazzo M, Hilal T, Wang B, Selinger TL, Gjorgjevikj D, Artsimovitch I, Wahl MC. Sm-like protein Rof inhibits transcription termination factor ρ by binding site obstruction and conformational insulation. Biorxiv : the Preprint Server For Biology. PMID 37693585 DOI: 10.1101/2023.08.30.555460  0.541
2023 Wang B, Said N, Hilal T, Finazzo M, Wahl MC, Artsimovitch I. Transcription termination factor ρ polymerizes under stress. Biorxiv : the Preprint Server For Biology. PMID 37645988 DOI: 10.1101/2023.08.18.553922  0.483
2023 Qian J, Cartee AG, Dunlap D, Artsimovitch I, Finzi L. Transcription Through Roadblock Systems Reveals A Hybrid Transit Mechanism. Biorxiv : the Preprint Server For Biology. PMID 36711567 DOI: 10.1101/2023.01.04.522798  0.417
2022 Wang B, Svetlov D, Bartikofsky D, Wobus CE, Artsimovitch I. Going Retro, Going Viral: Experiences and Lessons in Drug Discovery from COVID-19. Molecules (Basel, Switzerland). 27. PMID 35744940 DOI: 10.3390/molecules27123815  0.382
2022 Molina JA, Galaz-Davison P, Komives EA, Artsimovitch I, Ramírez-Sarmiento CA. Allosteric couplings upon binding of RfaH to transcription elongation complexes. Nucleic Acids Research. PMID 35670666 DOI: 10.1093/nar/gkac453  0.522
2022 Janissen R, Eslami-Mossallam B, Artsimovitch I, Depken M, Dekker NH. High-throughput single-molecule experiments reveal heterogeneity, state switching, and three interconnected pause states in transcription. Cell Reports. 39: 110749. PMID 35476989 DOI: 10.1016/j.celrep.2022.110749  0.448
2022 Wang B, Mittermeier M, Artsimovitch I. RfaH May Oppose Silencing by H-NS and YmoA Proteins during Transcription Elongation. Journal of Bacteriology. e0059921. PMID 35258322 DOI: 10.1128/jb.00599-21  0.478
2022 Xu W, Yan Y, Artsimovitch I, Dunlap D, Finzi L. Positive supercoiling favors transcription elongation through lac repressor-mediated DNA loops. Nucleic Acids Research. PMID 35188572 DOI: 10.1093/nar/gkac093  0.503
2022 Mittermeier M, Wang B, Said N, Gjorgjevikj D, Wahl MC, Artsimovitch I. A non-native C-terminal extension of the β' subunit compromises RNA polymerase and Rho functions. Molecular Microbiology. PMID 35049093 DOI: 10.1111/mmi.14879  0.374
2021 Artsimovitch I. Bacterial RNA synthesis: back to the limelight. Transcription. 12: 89-91. PMID 34783633 DOI: 10.1080/21541264.2021.2001236  0.404
2021 Wang B, Svetlov D, Artsimovitch I. NMPylation and de-NMPylation of SARS-CoV-2 nsp9 by the NiRAN domain. Nucleic Acids Research. PMID 34352100 DOI: 10.1093/nar/gkab677  0.488
2021 Wang B, Svetlov V, Wolf YI, Koonin EV, Nudler E, Artsimovitch I. Allosteric Activation of SARS-CoV-2 RNA-Dependent RNA Polymerase by Remdesivir Triphosphate and Other Phosphorylated Nucleotides. Mbio. e0142321. PMID 34154407 DOI: 10.1128/mBio.01423-21  0.484
2021 Wang B, Svetlov V, Wolf YI, Koonin EV, Nudler E, Artsimovitch I. Allosteric activation of SARS-CoV-2 RdRp by remdesivir triphosphate and other phosphorylated nucleotides. Biorxiv : the Preprint Server For Biology. PMID 33948598 DOI: 10.1101/2021.01.24.428004  0.455
2021 Chatterjee S, Chauvier A, Dandpat SS, Artsimovitch I, Walter NG. A translational riboswitch coordinates nascent transcription-translation coupling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33850018 DOI: 10.1073/pnas.2023426118  0.464
2020 Wang B, Artsimovitch I. NusG, an Ancient Yet Rapidly Evolving Transcription Factor. Frontiers in Microbiology. 11: 619618. PMID 33488562 DOI: 10.3389/fmicb.2020.619618  0.559
2020 Pei HH, Hilal T, Chen ZA, Huang YH, Gao Y, Said N, Loll B, Rappsilber J, Belogurov GA, Artsimovitch I, Wahl MC. The δ subunit and NTPase HelD institute a two-pronged mechanism for RNA polymerase recycling. Nature Communications. 11: 6418. PMID 33339827 DOI: 10.1038/s41467-020-20159-3  0.484
2020 Said N, Hilal T, Sunday ND, Khatri A, Bürger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC. Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ. Science (New York, N.Y.). PMID 33243850 DOI: 10.1126/science.abd1673  0.562
2020 Wang B, Gumerov VM, Andrianova EP, Zhulin IB, Artsimovitch I. Origins and Molecular Evolution of the NusG Paralog RfaH. Mbio. 11. PMID 33109766 DOI: 10.1128/mBio.02717-20  0.48
2020 Ye J, Chu AJ, Lin L, Chan ST, Harper R, Xiao M, Artsimovitch I, Zuo Z, Ma C, Yang X. Benzyl and benzoyl benzoic acid inhibitors of bacterial RNA polymerase-sigma factor interaction. European Journal of Medicinal Chemistry. 208: 112671. PMID 32920341 DOI: 10.1016/J.Ejmech.2020.112671  0.583
2020 Ye J, Chu AJ, Harper R, Chan ST, Shek TL, Zhang Y, Ip M, Sambir M, Artsimovitch I, Zuo Z, Yang X, Ma C. Discovery of Antibacterials That Inhibit Bacterial RNA Polymerase Interactions with Sigma Factors. Journal of Medicinal Chemistry. PMID 32633513 DOI: 10.1021/Acs.Jmedchem.0C00520  0.483
2020 Yan Y, Xu W, Qian J, Artsimovitch I, Dunlap D, Finzi L. Transcriptional Obstacles Modify Repetitive Elongation Biophysical Journal. 118: 74a. DOI: 10.1016/J.Bpj.2019.11.579  0.486
2020 Janissen R, Eslami-Mossallam B, Artsimovitch I, Depken M, Dekker NH. A Unifying Mechanistic Model of Bacterial Transcription with Three Interconnected Pause States and Non-Diffusive Backtrack Recovery Biophysical Journal. 118: 543a. DOI: 10.1016/J.Bpj.2019.11.2974  0.327
2020 Qian J, Xu W, Yan Y, Artsimovitch I, Dunlap D, Finzi L. Force and GreA Modulate Transcriptional Pauses at Elongational Obstacles Biophysical Journal. 118: 542a. DOI: 10.1016/J.Bpj.2019.11.2970  0.362
2019 Galaz-Davison P, Molina JA, Silletti S, Komives EA, Knauer SH, Artsimovitch I, Ramírez-Sarmiento CA. Differential Local Stability Governs the Metamorphic Fold Switch of Bacterial Virulence Factor RfaH. Biophysical Journal. PMID 31810657 DOI: 10.1016/J.Bpj.2019.11.014  0.491
2019 Artsimovitch I. RNA synthesis is a team effort. Nature Microbiology. 4: 1776-1777. PMID 31649357 DOI: 10.1038/S41564-019-0600-9  0.507
2019 Bergkessel M, Babin BM, VanderVelde D, Sweredoski MJ, Moradian A, Eggleston-Rangel R, Hess S, Tirrell DA, Artsimovitch I, Newman DK. The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa. Molecular Microbiology. PMID 31254296 DOI: 10.1111/Mmi.14337  0.612
2019 Belogurov GA, Artsimovitch I. The mechanisms of substrate selection, catalysis and translocation by the elongating RNA polymerase. Journal of Molecular Biology. PMID 31153902 DOI: 10.1016/J.Jmb.2019.05.042  0.573
2019 Artsimovitch I, Knauer SH. Ancient Transcription Factors in the News. Mbio. 10. PMID 30808693 DOI: 10.1128/Mbio.01547-18  0.653
2019 Zuber PK, Schweimer K, Rösch P, Artsimovitch I, Knauer SH. Reversible fold-switching controls the functional cycle of the antitermination factor RfaH. Nature Communications. 10: 702. PMID 30742024 DOI: 10.1038/S41467-019-08567-6  0.503
2018 Widom JR, Nedialkov YA, Rai V, Hayes RL, Brooks CL, Artsimovitch I, Walter NG. Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing. Molecular Cell. 72: 541-552.e6. PMID 30388413 DOI: 10.1016/J.Molcel.2018.08.046  0.586
2018 Lawson MR, Ma W, Bellecourt MJ, Artsimovitch I, Martin A, Landick R, Schulten K, Berger JM. Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein. Molecular Cell. PMID 30122535 DOI: 10.1016/J.Molcel.2018.07.014  0.578
2018 Svetlov D, Shi D, Twentyman J, Nedialkov Y, Rosen DA, Abagyan R, Artsimovitch I. In silico discovery of small molecules that inhibit RfaH recruitment to RNA polymerase. Molecular Microbiology. PMID 30069925 DOI: 10.1111/Mmi.14093  0.488
2018 Janissen R, Arens MMA, Vtyurina NN, Rivai Z, Sunday ND, Eslami-Mossallam B, Gritsenko AA, Laan L, de Ridder D, Artsimovitch I, Dekker NH, Abbondanzieri EA, Meyer AS. Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription. Cell. PMID 30057118 DOI: 10.1016/J.Cell.2018.06.049  0.473
2018 Kang JY, Mooney RA, Nedialkov Y, Saba J, Mishanina TV, Artsimovitch I, Landick R, Darst SA. Structural Basis for Transcript Elongation Control by NusG Family Universal Regulators. Cell. PMID 29887376 DOI: 10.1016/J.Cell.2018.05.017  0.614
2018 Nedialkov Y, Svetlov D, Belogurov GA, Artsimovitch I. Locking the non-template DNA to control transcription. Molecular Microbiology. PMID 29758107 DOI: 10.1111/Mmi.13983  0.548
2018 Zuber PK, Artsimovitch I, NandyMazumdar M, Liu Z, Nedialkov Y, Schweimer K, Rösch P, Knauer SH. The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand. Elife. 7. PMID 29741479 DOI: 10.7554/Elife.36349  0.589
2018 Artsimovitch I. Rebuilding the bridge between transcription and translation. Molecular Microbiology. PMID 29608805 DOI: 10.1111/Mmi.13964  0.573
2018 Artsimovitch I, Belogurov GA. Uneven Braking Spins RNA Polymerase into a Pause. Molecular Cell. 69: 723-725. PMID 29499129 DOI: 10.1016/J.Molcel.2018.02.013  0.482
2018 Zuber PK, Artsimovitch I, NandyMazumdar M, Liu Z, Nedialkov Y, Schweimer K, Rösch P, Knauer SH. Author response: The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand Elife. DOI: 10.7554/Elife.36349.022  0.462
2017 Shi D, Svetlov D, Abagyan R, Artsimovitch I. Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor. Nucleic Acids Research. PMID 28605514 DOI: 10.1093/Nar/Gkx523  0.621
2017 Hu K, Artsimovitch I. A Screen for rfaH Suppressors Reveals a Key Role for a Connector Region of Termination Factor Rho. Mbio. 8. PMID 28559482 DOI: 10.1128/Mbio.00753-17  0.6
2017 Strobel EJ, Watters KE, Nedialkov Y, Artsimovitch I, Lucks JB. Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding. Nucleic Acids Research. PMID 28398514 DOI: 10.1093/Nar/Gkx233  0.589
2016 NandyMazumdar M, Nedialkov Y, Svetlov D, Sevostyanova A, Belogurov GA, Artsimovitch I. RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27956639 DOI: 10.1073/Pnas.1613673114  0.578
2016 Elgamal S, Artsimovitch I, Ibba M. Maintenance of Transcription-Translation Coupling by Elongation Factor P. Mbio. 7. PMID 27624127 DOI: 10.1128/Mbio.01373-16  0.483
2016 Sreenivasan R, Heitkamp S, Chhabra M, Saecker RM, Lingeman E, Poulos M, McCaslin DR, Capp MW, Artsimovitch I, Record MT. FRET Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase - λPR Promoter Complexes. Biochemistry. PMID 26998673 DOI: 10.1021/Acs.Biochem.6B00125  0.367
2016 Ramírez-Sarmiento CA, Noel JK, Valenzuela SL, Artsimovitch I. Interdomain Contacts and RNA Polymerase Control Native State Interconversion of the Transformer Protein RfaH on a Dual-Funneled Landscape Biophysical Journal. 110: 389a-390a. DOI: 10.1016/J.Bpj.2015.11.2105  0.561
2016 Chhabra M, Sreenivasan R, Poulos M, Ruff E, Artsimovitch I, Record T. Kinetics and Mechanism of Formation and Stabilization of the RNA Polymerase-Promoter Open Compex Biophysical Journal. 110: 233a. DOI: 10.1016/J.Bpj.2015.11.1283  0.537
2015 Ramírez-Sarmiento CA, Noel JK, Valenzuela SL, Artsimovitch I. Interdomain Contacts Control Native State Switching of RfaH on a Dual-Funneled Landscape. Plos Computational Biology. 11: e1004379. PMID 26230837 DOI: 10.1371/Journal.Pcbi.1004379  0.563
2015 Belogurov GA, Artsimovitch I. Regulation of Transcript Elongation. Annual Review of Microbiology. 69: 49-69. PMID 26132790 DOI: 10.1146/Annurev-Micro-091014-104047  0.581
2015 Artsimovitch I, Belogurov GA. Creative Math of RNA Polymerase III Termination: Sense Plus Antisense Makes More Sense. Molecular Cell. 58: 974-6. PMID 26091347 DOI: 10.1016/J.Molcel.2015.06.003  0.574
2015 Ruff EF, Drennan AC, Capp MW, Poulos MA, Artsimovitch I, Record MT. E. coli RNA Polymerase Determinants of Open Complex Lifetime and Structure. Journal of Molecular Biology. 427: 2435-50. PMID 26055538 DOI: 10.1016/J.Jmb.2015.05.024  0.536
2015 Ruff EF, Record MT, Artsimovitch I. Initial events in bacterial transcription initiation. Biomolecules. 5: 1035-62. PMID 26023916 DOI: 10.3390/biom5021035  0.476
2015 Artsimovitch I, Santangelo TJ. Preface. Bacterial transcriptional control. Methods in Molecular Biology (Clifton, N.J.). 1276: v. PMID 25811056 DOI: 10.1007/978-1-4939-2392-2  0.418
2015 Furman R, Danhart EM, NandyMazumdar M, Yuan C, Foster MP, Artsimovitch I. pH dependence of the stress regulator DksA. Plos One. 10: e0120746. PMID 25799498 DOI: 10.1371/Journal.Pone.0120746  0.638
2015 Svetlov V, Artsimovitch I. Purification of bacterial RNA polymerase: tools and protocols. Methods in Molecular Biology (Clifton, N.J.). 1276: 13-29. PMID 25665556 DOI: 10.1007/978-1-4939-2392-2_2  0.551
2015 Liu Z, Artsimovitch I. Mapping the Escherichia coli transcription elongation complex with exonuclease III. Methods in Molecular Biology (Clifton, N.J.). 1276: 1-12. PMID 25665555 DOI: 10.1007/978-1-4939-2392-2_1  0.621
2015 NandyMazumdar M, Artsimovitch I. Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 324-34. PMID 25640595 DOI: 10.1002/Bies.201400177  0.642
2014 Malinen AM, Nandymazumdar M, Turtola M, Malmi H, Grocholski T, Artsimovitch I, Belogurov GA. CBR antimicrobials alter coupling between the bridge helix and the β subunit in RNA polymerase. Nature Communications. 5: 3408. PMID 24598909 DOI: 10.1038/Ncomms4408  0.461
2014 Artsimovitch I. Molecular biology: The tug of DNA repair. Nature. 505: 298-9. PMID 24402229 DOI: 10.1038/Nature12850  0.52
2014 Miropolskaya N, Esyunina D, Klimasauskas S, Nikiforov V, Artsimovitch I, Kulbachinskiy A. Interplay between the trigger loop and the F loop during RNA polymerase catalysis. Nucleic Acids Research. 42: 544-52. PMID 24089145 DOI: 10.1093/Nar/Gkt877  0.538
2014 Artsimovitch I. Expressing horizontally acquired genes requires multitasking: Before taking advantage of foreign genes, bacterial recipients need to overcome their own gene-silencing mechanisms Microbe. 9: 158-164. DOI: 10.1128/Microbe.9.158.1  0.484
2014 Ruff E, Svetlov D, Bown N, Persing T, Chong-Macias S, Drennan A, Artsimovitch I, Record MT. Toward a General Mechanism for Transcription Initiation Biophysical Journal. 106: 488a. DOI: 10.1016/J.Bpj.2013.11.4480  0.519
2014 Sreenivasan R, Heitkamp S, Capp M, Artsimovitch I, Record T. Characterization of Transcription Initiation Intermediates in Escherichia Coli RNA Polymerase by Fluorescence Biophysical Journal. 106: 487a. DOI: 10.1016/J.Bpj.2013.11.4475  0.517
2013 Tomar SK, Knauer SH, Nandymazumdar M, Rösch P, Artsimovitch I. Interdomain contacts control folding of transcription factor RfaH. Nucleic Acids Research. 41: 10077-85. PMID 23990324 DOI: 10.1093/Nar/Gkt779  0.495
2013 Tomar SK, Artsimovitch I. NusG-Spt5 proteins-Universal tools for transcription modification and communication. Chemical Reviews. 113: 8604-19. PMID 23638618 DOI: 10.1021/Cr400064K  0.349
2013 Furman R, Biswas T, Danhart EM, Foster MP, Tsodikov OV, Artsimovitch I. DksA2, a zinc-independent structural analog of the transcription factor DksA. Febs Letters. 587: 614-9. PMID 23416301 DOI: 10.1016/J.Febslet.2013.01.073  0.697
2013 Nedialkov YA, Opron K, Assaf F, Artsimovitch I, Kireeva ML, Kashlev M, Cukier RI, Nudler E, Burton ZF. The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation. Biochimica Et Biophysica Acta. 1829: 187-98. PMID 23202476 DOI: 10.1016/J.Bbagrm.2012.11.005  0.521
2013 Furman R, Tsodikov OV, Wolf YI, Artsimovitch I. An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase. Journal of Molecular Biology. 425: 82-93. PMID 23147217 DOI: 10.1016/J.Jmb.2012.11.008  0.73
2013 Ruff EF, Svetlov D, Artsimovitch I, Record T. Regulation of Initiation and Transcription by E. coli RNA Polymerase Sigma Region 1.2 and Promoter Sequence Biophysical Journal. 104: 584a. DOI: 10.1016/J.Bpj.2012.11.3248  0.61
2012 Knauer SH, Rösch P, Artsimovitch I. Transformation: the next level of regulation. Rna Biology. 9: 1418-23. PMID 23131843 DOI: 10.4161/Rna.22724  0.527
2012 Drennan A, Kraemer M, Capp M, Gries T, Ruff E, Sheppard C, Wigneshweraraj S, Artsimovitch I, Record MT. Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation. Biochemistry. 51: 9447-59. PMID 23116321 DOI: 10.1021/Bi301260U  0.553
2012 Deaconescu AM, Artsimovitch I, Grigorieff N. Interplay of DNA repair with transcription: from structures to mechanisms. Trends in Biochemical Sciences. 37: 543-52. PMID 23084398 DOI: 10.1016/J.Tibs.2012.09.002  0.412
2012 Burmann BM, Knauer SH, Sevostyanova A, Schweimer K, Mooney RA, Landick R, Artsimovitch I, Rösch P. An α helix to β barrel domain switch transforms the transcription factor RfaH into a translation factor. Cell. 150: 291-303. PMID 22817892 DOI: 10.1016/J.Cell.2012.05.042  0.558
2012 Artsimovitch I, Seddon J, Sears P. Fidaxomicin is an inhibitor of the initiation of bacterial RNA synthesis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 55: S127-31. PMID 22752861 DOI: 10.1093/Cid/Cis358  0.575
2012 Svetlov V, Artsimovitch I, Nudler E. Response to Klyuyev and Vassylyev: on the mechanism of tagetitoxin inhibition of transcription. Transcription. 3: 51-5. PMID 22414748 DOI: 10.4161/trns.19749  0.396
2012 Deaconescu AM, Sevostyanova A, Artsimovitch I, Grigorieff N. Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface. Proceedings of the National Academy of Sciences of the United States of America. 109: 3353-8. PMID 22331906 DOI: 10.1073/Pnas.1115105109  0.544
2012 Perdrizet GA, Artsimovitch I, Furman R, Sosnick TR, Pan T. Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch. Proceedings of the National Academy of Sciences of the United States of America. 109: 3323-8. PMID 22331895 DOI: 10.1073/Pnas.1113086109  0.724
2012 Furman R, Sevostyanova A, Artsimovitch I. Transcription initiation factor DksA has diverse effects on RNA chain elongation. Nucleic Acids Research. 40: 3392-402. PMID 22210857 DOI: 10.1093/Nar/Gkr1273  0.748
2012 Drennan A, Saecker R, Heitkamp S, Capp M, Kraemer M, Bellissimo D, Gries T, Ruff E, Sheppard C, Wigneshweraraj S, Artsimovitch I, Record MT. E. Coli RNA Polymerase: A Molecular DNA Opening Machine Biophysical Journal. 102: 286a. DOI: 10.1016/J.Bpj.2011.11.1583  0.464
2011 Artsimovitch I, Svetlov V, Nemetski SM, Epshtein V, Cardozo T, Nudler E. Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop. The Journal of Biological Chemistry. 286: 40395-400. PMID 21976682 DOI: 10.1074/Jbc.M111.300889  0.567
2011 Sevostyanova A, Belogurov GA, Mooney RA, Landick R, Artsimovitch I. The β subunit gate loop is required for RNA polymerase modification by RfaH and NusG. Molecular Cell. 43: 253-62. PMID 21777814 DOI: 10.1016/J.Molcel.2011.05.026  0.596
2011 Santangelo TJ, Artsimovitch I. Termination and antitermination: RNA polymerase runs a stop sign. Nature Reviews. Microbiology. 9: 319-29. PMID 21478900 DOI: 10.1038/Nrmicro2560  0.56
2011 Blaby-Haas CE, Furman R, Rodionov DA, Artsimovitch I, de Crécy-Lagard V. Role of a Zn-independent DksA in Zn homeostasis and stringent response. Molecular Microbiology. 79: 700-15. PMID 21255113 DOI: 10.1111/J.1365-2958.2010.07475.X  0.681
2010 Miropolskaya N, Nikiforov V, Klimasauskas S, Artsimovitch I, Kulbachinskiy A. Modulation of RNA polymerase activity through the trigger loop folding. Transcription. 1: 89-94. PMID 21326898 DOI: 10.4161/trns.1.2.12544  0.502
2010 Sevostyanova A, Artsimovitch I. Functional analysis of Thermus thermophilus transcription factor NusG. Nucleic Acids Research. 38: 7432-45. PMID 20639538 DOI: 10.1093/Nar/Gkq623  0.587
2010 Pupov D, Miropolskaya N, Sevostyanova A, Bass I, Artsimovitch I, Kulbachinskiy A. Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation. Nucleic Acids Research. 38: 5784-96. PMID 20457751 DOI: 10.1093/Nar/Gkq355  0.615
2010 Artsimovitch I. A processive riboantiterminator seeks a switch to make biofilms. Molecular Microbiology. 76: 535-9. PMID 20384681 DOI: 10.1111/J.1365-2958.2010.07133.X  0.556
2010 Belogurov GA, Sevostyanova A, Svetlov V, Artsimovitch I. Functional regions of the N-terminal domain of the antiterminator RfaH. Molecular Microbiology. 76: 286-301. PMID 20132437 DOI: 10.1111/J.1365-2958.2010.07056.X  0.55
2009 Kulaeva OI, Gaykalova DA, Pestov NA, Golovastov VV, Vassylyev DG, Artsimovitch I, Studitsky VM. Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. Nature Structural & Molecular Biology. 16: 1272-8. PMID 19935686 DOI: 10.1038/Nsmb.1689  0.448
2009 Miropolskaya N, Artsimovitch I, Klimasauskas S, Nikiforov V, Kulbachinskiy A. Allosteric control of catalysis by the F loop of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 106: 18942-7. PMID 19855007 DOI: 10.1073/Pnas.0905402106  0.459
2009 Belogurov GA, Mooney RA, Svetlov V, Landick R, Artsimovitch I. Functional specialization of transcription elongation factors. The Embo Journal. 28: 112-22. PMID 19096362 DOI: 10.1038/Emboj.2008.268  0.593
2009 Artsimovitch I, Henkin TM. In vitro approaches to analysis of transcription termination Methods. 47: 37-43. PMID 18948199 DOI: 10.1016/J.Ymeth.2008.10.006  0.471
2009 Belogurov GA, Vassylyeva MN, Sevostyanova A, Appleman JR, Xiang AX, Lira R, Webber SE, Klyuyev S, Nudler E, Artsimovitch I, Vassylyev DG. Transcription inactivation through local refolding of the RNA polymerase structure. Nature. 457: 332-5. PMID 18946472 DOI: 10.1038/Nature07510  0.591
2008 Artsimovitch I. Post-initiation control by the initiation factor sigma. Molecular Microbiology. 68: 1-3. PMID 18312277 DOI: 10.1111/J.1365-2958.2008.06136.X  0.617
2008 Sevostyanova A, Svetlov V, Vassylyev DG, Artsimovitch I. The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex. Proceedings of the National Academy of Sciences of the United States of America. 105: 865-70. PMID 18195372 DOI: 10.1073/Pnas.0708432105  0.641
2008 Vassylyev D, Vassylyeva M, Perederina A, Zhang J, Palangat M, Landick R, Tahirov T, Artsimovitch I. Structural basis of transcription: structures of the bacterial RNA polymerase elongation complexes Acta Crystallographica Section a Foundations of Crystallography. 64: C15-C16. DOI: 10.1107/S0108767308099558  0.485
2008 Vassylyeva M, Svetlov V, Klyuyev S, Dearborn A, Artsimovitch I, Vassylyev D. From structure to function: structure of the Gre-factor reveals its binding site on RNA polymerase Acta Crystallographica Section a Foundations of Crystallography. 64: C332-C332. DOI: 10.1107/S0108767308089393  0.438
2007 Artsimovitch I, Vassylyev DG. Merging the RNA and DNA worlds. Nature Structural & Molecular Biology. 14: 1122-3. PMID 18059450 DOI: 10.1038/Nsmb1207-1122  0.531
2007 Vassylyeva MN, Svetlov V, Dearborn AD, Klyuyev S, Artsimovitch I, Vassylyev DG. The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors. Embo Reports. 8: 1038-43. PMID 17917675 DOI: 10.1038/Sj.Embor.7401079  0.57
2007 Svetlov V, Belogurov GA, Shabrova E, Vassylyev DG, Artsimovitch I. Allosteric control of the RNA polymerase by the elongation factor RfaH. Nucleic Acids Research. 35: 5694-705. PMID 17711918 DOI: 10.1093/nar/gkm600  0.565
2007 Vassylyev DG, Vassylyeva MN, Zhang J, Palangat M, Artsimovitch I, Landick R. Structural basis for substrate loading in bacterial RNA polymerase. Nature. 448: 163-8. PMID 17581591 DOI: 10.1038/nature05931  0.412
2007 Vassylyev DG, Vassylyeva MN, Perederina A, Tahirov TH, Artsimovitch I. Structural basis for transcription elongation by bacterial RNA polymerase. Nature. 448: 157-62. PMID 17581590 DOI: 10.1038/Nature05932  0.614
2007 Belogurov GA, Vassylyeva MN, Svetlov V, Klyuyev S, Grishin NV, Vassylyev D, Artsimovitch I. Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator Molecular Cell. 26: 117-129. PMID 17434131 DOI: 10.1016/J.Molcel.2007.02.021  0.515
2006 Vassylyeva MN, Svetlov V, Klyuyev S, Devedjiev YD, Artsimovitch I, Vassylyev DG. Crystallization and preliminary crystallographic analysis of the transcriptional regulator RfaH from Escherichia coli and its complex with ops DNA. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1027-30. PMID 17012804 DOI: 10.1107/S174430910603658X  0.397
2006 Perederina AA, Vassylyeva MN, Berezin IA, Svetlov V, Artsimovitch I, Vassylyev DG. Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 44-6. PMID 16511259 DOI: 10.1107/S1744309105040297  0.343
2006 Artsimovitch I, Vassylyev DG. Is it easy to stop RNA polymerase? Cell Cycle (Georgetown, Tex.). 5: 399-404. PMID 16479153 DOI: 10.4161/Cc.5.4.2466  0.492
2006 Symersky J, Perederina A, Vassylyeva MN, Svetlov V, Artsimovitch I, Vassylyev DG. Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors. The Journal of Biological Chemistry. 281: 1309-12. PMID 16298991 DOI: 10.1074/jbc.C500405200  0.517
2005 Vassylyev DG, Artsimovitch I. Tracking RNA polymerase, one step at a time. Cell. 123: 977-9. PMID 16360025 DOI: 10.1016/J.Cell.2005.11.030  0.564
2005 Vassylyev DG, Svetlov V, Vassylyeva MN, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Artsimovitch I. Structural basis for transcription inhibition by tagetitoxin. Nature Structural & Molecular Biology. 12: 1086-93. PMID 16273103 DOI: 10.1038/Nsmb1015  0.479
2005 Artsimovitch I, Vassylyeva MN, Svetlov D, Svetlov V, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Tahirov TH, Vassylyev DG. Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins. Cell. 122: 351-63. PMID 16096056 DOI: 10.1016/J.Cell.2005.07.014  0.548
2005 Toulmé F, Mosrin-Huaman C, Artsimovitch I, Rahmouni AR. Transcriptional pausing in vivo: a nascent RNA hairpin restricts lateral movements of RNA polymerase in both forward and reverse directions. Journal of Molecular Biology. 351: 39-51. PMID 15993420 DOI: 10.1016/J.Jmb.2005.05.052  0.584
2004 Vicari D, Artsimovitch I. Virulence regulators RfaH and YaeQ do not operate in the same pathway Molecular Genetics and Genomics. 272: 489-496. PMID 15503145 DOI: 10.1007/s00438-004-1065-x  0.388
2004 Perederina A, Svetlov V, Vassylyeva MN, Tahirov TH, Yokoyama S, Artsimovitch I, Vassylyev DG. Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription. Cell. 118: 297-309. PMID 15294156 DOI: 10.1016/J.Cell.2004.06.030  0.574
2004 Svetlov V, Vassylyev DG, Artsimovitch I. Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase. The Journal of Biological Chemistry. 279: 38087-90. PMID 15262972 DOI: 10.1074/Jbc.C400316200  0.511
2004 Artsimovitch I, Patlan V, Sekine S, Vassylyeva MN, Hosaka T, Ochi K, Yokoyama S, Vassylyev DG. Structural basis for transcription regulation by alarmone ppGpp. Cell. 117: 299-310. PMID 15109491 DOI: 10.1016/S0092-8674(04)00401-5  0.576
2004 Carter HD, Svetlov V, Artsimovitch I. Highly divergent RfaH orthologs from pathogenic proteobacteria can substitute for Escherichia coli RfaH both in vivo and in vitro. Journal of Bacteriology. 186: 2829-40. PMID 15090525 DOI: 10.1128/Jb.186.9.2829-2840.2004  0.4
2003 Artsimovitch I, Chu C, Lynch AS, Landick R. A new class of bacterial RNA polymerase inhibitor affects nucleotide addition. Science (New York, N.Y.). 302: 650-4. PMID 14576436 DOI: 10.1126/Science.1087526  0.488
2003 Murphy McDaniel BA, Grundy FJ, Artsimovitch I, Henkin TM. Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA Proceedings of the National Academy of Sciences of the United States of America. 100: 3083-3088. PMID 12626738 DOI: 10.1073/Pnas.0630422100  0.594
2003 Artsimovitch I, Svetlov V, Murakami KS, Landick R. Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions. The Journal of Biological Chemistry. 278: 12344-55. PMID 12511572 DOI: 10.1074/Jbc.M211214200  0.524
2002 Ederth J, Artsimovitch I, Isaksson LA, Landick R. The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing. The Journal of Biological Chemistry. 277: 37456-63. PMID 12147705 DOI: 10.1074/Jbc.M207038200  0.546
2002 Artsimovitch I, Landick R. The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand. Cell. 109: 193-203. PMID 12007406 DOI: 10.1016/S0092-8674(02)00724-9  0.546
2001 Gruber TM, Markov D, Sharp MM, Young BA, Lu CZ, Zhong HJ, Artsimovitch I, Geszvain KM, Arthur TM, Burgess RR, Landick R, Severinov K, Gross CA. Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process. Molecular Cell. 8: 21-31. PMID 11511357 DOI: 10.1016/S1097-2765(01)00292-1  0.514
2001 Toulokhonov I, Artsimovitch I, Landick R. Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins Science. 292: 730-733. PMID 11326100 DOI: 10.1126/Science.1057738  0.544
2000 Artsimovitch I, Svetlov V, Anthony L, Burgess RR, Landick R. RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro Journal of Bacteriology. 182: 6027-6035. PMID 11029421 DOI: 10.1128/Jb.182.21.6027-6035.2000  0.511
2000 Anthony LC, Artsimovitch I, Svetlov V, Landick R, Burgess RR. Rapid purification of His(6)-tagged Bacillus subtilis core RNA polymerase. Protein Expression and Purification. 19: 350-4. PMID 10910724 DOI: 10.1006/Prep.2000.1272  0.433
2000 Artsimovitch I, Landick R. Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals Proceedings of the National Academy of Sciences of the United States of America. 97: 7090-7095. PMID 10860976 DOI: 10.1073/Pnas.97.13.7090  0.494
1999 Yin H, Artsimovitch I, Landick R, Gelles J. Nonequilibrium mechanism of transcription termination from observations of single RNA polymerase molecules. Proceedings of the National Academy of Sciences of the United States of America. 96: 13124-9. PMID 10557284 DOI: 10.1073/Pnas.96.23.13124  0.569
1999 Pan T, Artsimovitch I, Fang XW, Landick R, Sosnick TR. Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. Proceedings of the National Academy of Sciences of the United States of America. 96: 9545-50. PMID 10449729 DOI: 10.1073/Pnas.96.17.9545  0.617
1998 Artsimovitch I, Landick R. Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release Genes and Development. 12: 3110-3122. PMID 9765211 DOI: 10.1101/Gad.12.19.3110  0.527
1998 Mooney RA, Artsimovitch I, Landick R. Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation. Journal of Bacteriology. 180: 3265-75. PMID 9642176 DOI: 10.1128/Jb.180.13.3265-3275.1998  0.456
1996 Artsimovitch I, Murakami K, Ishihama A, Howe MM. Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma70 subunits of Escherichia coli RNA polymerase. The Journal of Biological Chemistry. 271: 32343-8. PMID 8943297 DOI: 10.1074/Jbc.271.50.32343  0.4
1996 Artsimovitch I, Kahmeyer-Gabbe M, Howe MM. Distortion in the spacer region of Pm during activation of middle transcription of phage Mu. Proceedings of the National Academy of Sciences of the United States of America. 93: 9408-13. PMID 8790343  0.414
1996 Artsimovitch I, Howe MM. Transcription activation by the bacteriophage Mu Mor protein: analysis of promoter mutations in Pm identifies a new region required for promoter function. Nucleic Acids Research. 24: 450-7. PMID 8602357  0.329
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