| Year |
Citation |
Score |
| 2020 |
Patterson A, Zhao Z, Waymire E, Zlotnick A, Bothner B. Dynamics of Hepatitis B virus capsid protein dimer regulate assembly through an allosteric network. Acs Chemical Biology. PMID 32662972 DOI: 10.1021/Acschembio.0C00481 |
0.355 |
|
| 2020 |
Hartman R, Biewenga L, Munson-McGee J, Refai M, Boyd ES, Bothner B, Lawrence CM, Young M. Discovery and Characterization of TSPV1: A Spherical Archaeal Virus Decorated with Unusual Filaments. Journal of Virology. PMID 32213609 DOI: 10.1128/Jvi.00036-20 |
0.396 |
|
| 2020 |
Steward KF, Eilers B, Tripet B, Fuchs A, Dorle M, Rawle R, Soriano B, Balasubramanian N, Copié V, Bothner B, Hatzenpichler R. Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis. Frontiers in Microbiology. 11: 197. PMID 32117186 DOI: 10.3389/Fmicb.2020.00197 |
0.333 |
|
| 2019 |
Zignego DL, Hilmer JK, Bothner B, Schell WJ, June RK. Primary human chondrocytes respond to compression with phosphoproteomic signatures that include microtubule activation. Journal of Biomechanics. 109367. PMID 31607375 DOI: 10.1016/J.Jbiomech.2019.109367 |
0.712 |
|
| 2019 |
Patterson A, Tokmina-Lukaszewska M, Bothner B. Probing Cascade complex composition and stability using native mass spectrometry techniques. Methods in Enzymology. 616: 87-116. PMID 30691656 DOI: 10.1016/Bs.Mie.2018.10.018 |
0.35 |
|
| 2018 |
Tokmina-Lukaszewska M, Patterson A, Berry L, Scott L, Balasubramanian N, Bothner B. The Role of Mass Spectrometry in Structural Studies of Flavin-Based Electron Bifurcating Enzymes. Frontiers in Microbiology. 9: 1397. PMID 30026733 DOI: 10.3389/Fmicb.2018.01397 |
0.353 |
|
| 2018 |
Kant R, Rayaprolu V, McDonald K, Bothner B. Curating viscoelastic properties of icosahedral viruses, virus-based nanomaterials, and protein cages. Journal of Biological Physics. PMID 29637472 DOI: 10.1007/S10867-018-9491-X |
0.737 |
|
| 2018 |
Wang Q, Kang YS, Alowaifeer A, Shi K, Fan X, Wang L, Jetter J, Bothner B, Wang G, McDermott TR. Phosphate Starvation Response Controls Genes Required to Synthesize the Phosphate Analog Arsenate. Environmental Microbiology. PMID 29575522 DOI: 10.1111/1462-2920.14108 |
0.314 |
|
| 2018 |
Kant R, Llauró A, Rayaprolu V, Qazi S, de Pablo PJ, Douglas T, Bothner B. Changes in the stability and biomechanics of P22 bacteriophage capsid during maturation. Biochimica Et Biophysica Acta. PMID 29550430 DOI: 10.1016/J.Bbagen.2018.03.006 |
0.72 |
|
| 2017 |
van Erp PBG, Patterson A, Kant R, Berry L, Golden SM, Forsman BL, Carter J, Jackson RN, Bothner B, Wiedenheft B. Conformational Dynamics of DNA Binding and Cas3 Recruitment by the CRISPR RNA-guide Cascade Complex. Acs Chemical Biology. PMID 29035497 DOI: 10.1021/Acschembio.7B00649 |
0.318 |
|
| 2017 |
Nguyen DMN, Schut GJ, Zadvornyy OA, Tokmina-Lukaszewska M, Poudel S, Lipscomb GL, Adams LA, Dinsmore JT, Nixon WJ, Boyd ES, Bothner B, Peters JW, Adams MWW. Two functionally distinct NADP(+)-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus. The Journal of Biological Chemistry. PMID 28705933 DOI: 10.1074/Jbc.M117.794172 |
0.307 |
|
| 2017 |
Keith BK, Burns EE, Bothner B, Carey CC, Mazurie AJ, Hilmer JK, Biyiklioglu S, Budak H, Dyer WE. Intensive herbicide use has selected for constitutively elevated levels of stress-responsive mRNAs and proteins in multiple herbicide-resistant Avena fatua L. Pest Management Science. PMID 28485049 DOI: 10.1002/Ps.4605 |
0.699 |
|
| 2016 |
Kant R, Zeng B, Thomas CJ, Bothner B, Sprang SR. Ric-8A, a G protein chaperone with nucleotide exchange activity induces long-range secondary structure changes in Gα. Elife. 5. PMID 28008853 DOI: 10.7554/Elife.19238 |
0.303 |
|
| 2016 |
Llauró A, Guerra P, Kant R, Bothner B, Verdaguer N, de Pablo PJ. Decrease in pH destabilizes individual vault nanocages by weakening the inter-protein lateral interaction. Scientific Reports. 6: 34143. PMID 27739422 DOI: 10.1038/Srep34143 |
0.324 |
|
| 2016 |
Mason KE, Hilmer JK, Maaty WS, Reeves BD, Grieco PA, Bothner B, Fischer AM. Proteomic comparison of near-isogenic barley (Hordeum vulgare L.) germplasm differing in the allelic state of a major senescence QTL identifies numerous proteins involved in plant pathogen defense. Plant Physiology and Biochemistry : Ppb / Societe Francaise De Physiologie Vegetale. 109: 114-127. PMID 27665045 DOI: 10.1016/J.Plaphy.2016.09.008 |
0.738 |
|
| 2016 |
Parker GJ, Leppert T, Anex DS, Hilmer JK, Matsunami N, Baird L, Stevens J, Parsawar K, Durbin-Johnson BP, Rocke DM, Nelson C, Fairbanks DJ, Wilson AS, Rice RH, Woodward SR, ... Bothner B, et al. Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome. Plos One. 11: e0160653. PMID 27603779 DOI: 10.1371/Journal.Pone.0160653 |
0.708 |
|
| 2016 |
Yang ZY, Ledbetter R, Shaw S, Pence NK, Tokmina-Lukaszewska M, Eilers BJ, Guo Q, Pokhrel N, Cash VL, Dean DR, Antony E, Bothner B, Peters JW, Seefeldt LC. Evidence that the Pi Release Event is the Rate Limiting Step in the Nitrogenase Catalytic Cycle. Biochemistry. PMID 27295169 DOI: 10.1021/Acs.Biochem.6B00421 |
0.333 |
|
| 2016 |
Luo ML, Jackson RN, Denny SR, Tokmina-Lukaszewska M, Maksimchuk KR, Lin W, Bothner B, Wiedenheft B, Beisel CL. The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers. Nucleic Acids Research. PMID 27174938 DOI: 10.1093/Nar/Gkw421 |
0.314 |
|
| 2016 |
Hamerly T, Bothner B. Investigations into the Use of a Protein Sensor Assay for Metabolite Analysis. Applied Biochemistry and Biotechnology. 178: 101-13. PMID 26394789 DOI: 10.1007/S12010-015-1861-2 |
0.349 |
|
| 2016 |
Kant R, Zeng B, Thomas CJ, Bothner B, Sprang SR. Author response: Ric-8A, a G protein chaperone with nucleotide exchange activity induces long-range secondary structure changes in Gα Elife. DOI: 10.7554/Elife.19238.017 |
0.307 |
|
| 2015 |
Selzer L, Kant R, Wang JC, Bothner B, Zlotnick A. Hepatitis B Virus Core Protein Phosphorylation Sites Affect Capsid Stability and Transient Exposure of the C-terminal Domain. The Journal of Biological Chemistry. 290: 28584-93. PMID 26405031 DOI: 10.1074/Jbc.M115.678441 |
0.371 |
|
| 2015 |
Hamerly T, Tripet BP, Tigges M, Giannone RJ, Wurch L, Hettich RL, Podar M, Copié V, Bothner B. Untargeted metabolomics studies employing NMR and LC-MS reveal metabolic coupling between Nanoarcheum equitans and its archaeal host Ignicoccus hospitalis. Metabolomics : Official Journal of the Metabolomic Society. 11: 895-907. PMID 26273237 DOI: 10.1007/S11306-014-0747-6 |
0.306 |
|
| 2014 |
Rayaprolu V, Kruse S, Kant R, Movahed N, Brooke D, Bothner B. Fluorometric Estimation of Viral Thermal Stability. Bio-Protocol. 4. PMID 27148558 |
0.72 |
|
| 2014 |
Ghose S, Hilmer JK, Bothner B, Broderick JB. Solution phase dynamics of the DNA repair enzyme spore photoproduct lyase as probed by H/D exchange. Febs Letters. 588: 3023-9. PMID 24950428 DOI: 10.1016/J.Febslet.2014.06.011 |
0.7 |
|
| 2014 |
Hamerly T, Heinemann J, Tokmina-Lukaszewska M, Lusczek ER, Mulier KE, Beilman GJ, Bothner B. Bovine serum albumin as a molecular sensor for the discrimination of complex metabolite samples. Analytica Chimica Acta. 818: 61-6. PMID 24626404 DOI: 10.1016/J.Aca.2014.01.058 |
0.306 |
|
| 2014 |
Heinemann J, Hamerly T, Maaty WS, Movahed N, Steffens JD, Reeves BD, Hilmer JK, Therien J, Grieco PA, Peters JW, Bothner B. Expanding the paradigm of thiol redox in the thermophilic root of life. Biochimica Et Biophysica Acta. 1840: 80-5. PMID 23962628 DOI: 10.1016/J.Bbagen.2013.08.009 |
0.74 |
|
| 2014 |
Sharon K, Duff G, Dailey J, Carroll J, Hilmer J, Bothner B. Effects of supplemental lysine on performance, antibody titer and rectal temperature in response to a modified-live viral vaccine in neonatal calves American Journal of Animal and Veterinary Sciences. 9: 122-127. DOI: 10.3844/Ajavsp.2014.122.127 |
0.702 |
|
| 2013 |
Rayaprolu V, Kruse S, Kant R, Venkatakrishnan B, Movahed N, Brooke D, Lins B, Bennett A, Potter T, McKenna R, Agbandje-McKenna M, Bothner B. Comparative analysis of adeno-associated virus capsid stability and dynamics. Journal of Virology. 87: 13150-60. PMID 24067976 DOI: 10.1128/Jvi.01415-13 |
0.74 |
|
| 2013 |
Epstein MG, Reeves BD, Maaty WS, Fouchard D, Dratz EA, Bothner B, Grieco PA. Enhanced sensitivity employing zwitterionic and pI balancing dyes (Z-CyDyes) optimized for 2D-gel electrophoresis based on side chain modifications of CyDye fluorophores. New tools for use in proteomics and diagnostics. Bioconjugate Chemistry. 24: 1552-61. PMID 23941326 DOI: 10.1021/Bc4002213 |
0.342 |
|
| 2013 |
Valenzuela J, Carlson RP, Gerlach R, Cooksey K, Peyton BM, Bothner B, Fields MW. Nutrient resupplementation arrests bio-oil accumulation in Phaeodactylum tricornutum. Applied Microbiology and Biotechnology. 97: 7049-59. PMID 23771779 DOI: 10.1007/S00253-013-5010-Y |
0.733 |
|
| 2013 |
Domitrovic T, Movahed N, Bothner B, Matsui T, Wang Q, Doerschuk PC, Johnson JE. Virus assembly and maturation: auto-regulation through allosteric molecular switches. Journal of Molecular Biology. 425: 1488-96. PMID 23485419 DOI: 10.1016/J.Jmb.2013.02.021 |
0.354 |
|
| 2013 |
Thomas CJ, Eps NV, Briknarova K, Hilner JK, Movahed N, Bothner B, Black LA, Hubbell W, Sprang SR. G Protein Activation: A Protein Unfolding Event? Biophysical Journal. 104: 19a. DOI: 10.1016/J.Bpj.2012.11.136 |
0.319 |
|
| 2012 |
Maaty WS, Steffens JD, Heinemann J, Ortmann AC, Reeves BD, Biswas SK, Dratz EA, Grieco PA, Young MJ, Bothner B. Global analysis of viral infection in an archaeal model system. Frontiers in Microbiology. 3: 411. PMID 23233852 DOI: 10.3389/Fmicb.2012.00411 |
0.433 |
|
| 2012 |
Kang YS, Heinemann J, Bothner B, Rensing C, McDermott TR. Integrated co-regulation of bacterial arsenic and phosphorus metabolisms. Environmental Microbiology. 14: 3097-109. PMID 23057575 DOI: 10.1111/J.1462-2920.2012.02881.X |
0.301 |
|
| 2012 |
Secor PR, Jennings LK, James GA, Kirker KR, Pulcini ED, McInnerney K, Gerlach R, Livinghouse T, Hilmer JK, Bothner B, Fleckman P, Olerud JE, Stewart PS. Phevalin (aureusimine B) production by Staphylococcus aureus biofilm and impacts on human keratinocyte gene expression. Plos One. 7: e40973. PMID 22808288 DOI: 10.1371/Journal.Pone.0040973 |
0.698 |
|
| 2012 |
Liu M, Zhu H, Li J, Garcia CC, Feng W, Kirpotina LN, Hilmer J, Tavares LP, Layton AW, Quinn MT, Bothner B, Teixeira MM, Lei B. Group A Streptococcus secreted esterase hydrolyzes platelet-activating factor to impede neutrophil recruitment and facilitate innate immune evasion. Plos Pathogens. 8: e1002624. PMID 22496650 DOI: 10.1371/Journal.Ppat.1002624 |
0.695 |
|
| 2012 |
Maaty WS, Selvig K, Ryder S, Tarlykov P, Hilmer JK, Heinemann J, Steffens J, Snyder JC, Ortmann AC, Movahed N, Spicka K, Chetia L, Grieco PA, Dratz EA, Douglas T, ... ... Bothner B, et al. Proteomic analysis of Sulfolobus solfataricus during Sulfolobus Turreted Icosahedral Virus infection. Journal of Proteome Research. 11: 1420-32. PMID 22217245 DOI: 10.1021/Pr201087V |
0.741 |
|
| 2012 |
Liu G, Liu M, Kim EH, Maaty WS, Bothner B, Lei B, Rensing C, Wang G, McDermott TR. A periplasmic arsenite-binding protein involved in regulating arsenite oxidation. Environmental Microbiology. 14: 1624-34. PMID 22176720 DOI: 10.1111/J.1462-2920.2011.02672.X |
0.35 |
|
| 2011 |
Thomas CJ, Briknarová K, Hilmer JK, Movahed N, Bothner B, Sumida JP, Tall GG, Sprang SR. The nucleotide exchange factor Ric-8A is a chaperone for the conformationally dynamic nucleotide-free state of Gαi1. Plos One. 6: e23197. PMID 21853086 DOI: 10.1371/Journal.Pone.0023197 |
0.69 |
|
| 2011 |
Heinemann J, Maaty WS, Gauss GH, Akkaladevi N, Brumfield SK, Rayaprolu V, Young MJ, Lawrence CM, Bothner B. Fossil record of an archaeal HK97-like provirus. Virology. 417: 362-8. PMID 21764098 DOI: 10.1016/J.Virol.2011.06.019 |
0.754 |
|
| 2011 |
Hilmer JK, Bothner B. Physical signal modulation of time-of-flight mass analyzers increases precision and decreases noise. Rapid Communications in Mass Spectrometry : Rcm. 25: 795-805. PMID 21337642 DOI: 10.1002/Rcm.4923 |
0.693 |
|
| 2010 |
Banerjee M, Speir JA, Kwan MH, Huang R, Aryanpur PP, Bothner B, Johnson JE. Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate. Journal of Virology. 84: 4737-46. PMID 20164221 DOI: 10.1128/Jvi.02670-09 |
0.329 |
|
| 2010 |
Rayaprolu V, Manning BM, Douglas T, Bothner B. Virus particles as active nanomaterials that can rapidly change their viscoelastic properties in response to dilute solutions Soft Matter. 6: 5286-5288. DOI: 10.1039/C0Sm00459F |
0.714 |
|
| 2009 |
Maaty WS, Wiedenheft B, Tarlykov P, Schaff N, Heinemann J, Robison-Cox J, Valenzuela J, Dougherty A, Blum P, Lawrence CM, Douglas T, Young MJ, Bothner B. Something old, something new, something borrowed; how the thermoacidophilic archaeon Sulfolobus solfataricus responds to oxidative stress. Plos One. 4: e6964. PMID 19759909 DOI: 10.1371/Journal.Pone.0006964 |
0.765 |
|
| 2009 |
Ambrose RL, Lander GC, Maaty WS, Bothner B, Johnson JE, Johnson KN. Drosophila A virus is an unusual RNA virus with a T=3 icosahedral core and permuted RNA-dependent RNA polymerase. The Journal of General Virology. 90: 2191-200. PMID 19474243 DOI: 10.1099/Vir.0.012104-0 |
0.317 |
|
| 2009 |
Fulton J, Bothner B, Lawrence M, Johnson JE, Douglas T, Young M. Genetics, biochemistry and structure of the archaeal virus STIV. Biochemical Society Transactions. 37: 114-7. PMID 19143613 DOI: 10.1042/Bst0370114 |
0.352 |
|
| 2008 |
Nelson CD, Minkkinen E, Bergkvist M, Hoelzer K, Fisher M, Bothner B, Parrish CR. Detecting small changes and additional peptides in the canine parvovirus capsid structure. Journal of Virology. 82: 10397-407. PMID 18701590 DOI: 10.1128/Jvi.00972-08 |
0.382 |
|
| 2008 |
Menon SK, Maaty WS, Corn GJ, Kwok SC, Eilers BJ, Kraft P, Gillitzer E, Young MJ, Bothner B, Lawrence CM. Cysteine usage in Sulfolobus spindle-shaped virus 1 and extension to hyperthermophilic viruses in general. Virology. 376: 270-8. PMID 18471851 DOI: 10.1016/J.Virol.2008.03.026 |
0.408 |
|
| 2008 |
Hilmer JK, Zlotnick A, Bothner B. Conformational equilibria and rates of localized motion within hepatitis B virus capsids. Journal of Molecular Biology. 375: 581-94. PMID 18022640 DOI: 10.1016/J.Jmb.2007.10.044 |
0.741 |
|
| 2006 |
Maaty WS, Ortmann AC, Dlakić M, Schulstad K, Hilmer JK, Liepold L, Weidenheft B, Khayat R, Douglas T, Young MJ, Bothner B. Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life. Journal of Virology. 80: 7625-35. PMID 16840341 DOI: 10.1128/Jvi.00522-06 |
0.739 |
|
| 2005 |
Bothner B, Taylor D, Jun B, Lee KK, Siuzdak G, Schultz CP, Schlutz CP, Johnson JE. Maturation of a tetravirus capsid alters the dynamic properties and creates a metastable complex. Virology. 334: 17-27. PMID 15749119 DOI: 10.1016/J.Virol.2005.01.017 |
0.369 |
|
| 2001 |
DiGiammarino EL, Filippov I, Weber JD, Bothner B, Kriwacki RW. Solution structure of the p53 regulatory domain of the p19Arf tumor suppressor protein. Biochemistry. 40: 2379-86. PMID 11327858 DOI: 10.1021/Bi0024005 |
0.302 |
|
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