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Yi-Tao Yu - Publications

Affiliations: 
University of Rochester, Rochester, NY 
Area:
Biochemistry
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65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chen JL, Leeder WM, Morais P, Adachi H, Yu YT. Pseudouridylation-mediated gene expression modulation. The Biochemical Journal. 481: 1-16. PMID 38174858 DOI: 10.1042/BCJ20230096  0.646
2023 Adachi H, Chen JL, Yin Q, Morais P, Yu YT. In Vitro Reconstitution of Pseudouridylation Catalyzed by Human Box H/ACA Ribonucleoprotein Particles. Methods in Molecular Biology (Clifton, N.J.). 2666: 177-191. PMID 37166666 DOI: 10.1007/978-1-0716-3191-1_14  0.648
2023 Adachi H, Pan Y, He X, Chen JL, Klein B, Platenburg G, Morais P, Boutz P, Yu YT. Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes. Molecular Cell. PMID 36764303 DOI: 10.1016/j.molcel.2023.01.009  0.424
2021 Adachi H, Hengesbach M, Yu YT, Morais P. From Antisense RNA to RNA Modification: Therapeutic Potential of RNA-Based Technologies. Biomedicines. 9. PMID 34068948 DOI: 10.3390/biomedicines9050550  0.649
2021 Morais P, Adachi H, Yu YT. Spliceosomal snRNA Epitranscriptomics. Frontiers in Genetics. 12: 652129. PMID 33737950 DOI: 10.3389/fgene.2021.652129  0.636
2020 Morais P, Adachi H, Yu YT. Suppression of Nonsense Mutations by New Emerging Technologies. International Journal of Molecular Sciences. 21. PMID 32575694 DOI: 10.3390/Ijms21124394  0.347
2020 Adachi H, Yu YT. Pseudouridine-mediated stop codon read-through in S. cerevisiae is sequence context-independent. Rna (New York, N.Y.). PMID 32434780 DOI: 10.1261/Rna.076042.120  0.365
2019 Adachi H, DeZoysa MD, Yu YT. Detection and Quantification of Pseudouridine in RNA. Methods in Molecular Biology (Clifton, N.J.). 1870: 219-235. PMID 30539559 DOI: 10.1007/978-1-4939-8808-2_17  0.654
2018 Adachi H, De Zoysa MD, Yu YT. Post-transcriptional pseudouridylation in mRNA as well as in some major types of noncoding RNAs. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. PMID 30414851 DOI: 10.1016/J.Bbagrm.2018.11.002  0.69
2018 De Zoysa MD, Wu G, Katz R, Yu YT. Guide-substrate base-pairing requirement for box H/ACA RNA-guided RNA pseudouridylation. Rna (New York, N.Y.). PMID 29871894 DOI: 10.1261/Rna.066837.118  0.778
2018 Zhao Y, Dunker W, Yu YT, Karijolich J. The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events. Frontiers in Bioengineering and Biotechnology. 6: 8. PMID 29473035 DOI: 10.3389/Fbioe.2018.00008  0.833
2018 De Zoysa MD, Yu Y. RNA-dependent pseudouridylation catalyzed by box H/ACA RNPs Frontiers in Biology. 13: 1-10. DOI: 10.1007/S11515-018-1480-8  0.694
2017 Ge J, Karijolich J, Zhai Y, Zheng J, Yu YT. 5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding. Genes. 8. PMID 29088058 DOI: 10.3390/Genes8110295  0.782
2017 Poole AR, Vicino I, Adachi H, Yu YT, Hebert MD. Regulatory RNPs: a novel class of ribonucleoproteins that potentially contribute to ribosome heterogeneity. Biology Open. PMID 28808137 DOI: 10.1242/Bio.028092  0.67
2017 De Zoysa MD, Yu YT. Posttranscriptional RNA Pseudouridylation. The Enzymes. 41: 151-167. PMID 28601221 DOI: 10.1016/Bs.Enz.2017.02.001  0.718
2016 Xu C, Ishikawa H, Izumikawa K, Li L, He H, Nobe Y, Yamauchi Y, Shahjee HM, Wu XH, Yu YT, Isobe T, Takahashi N, Min J. Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes & Development. 30: 2376-2390. PMID 27881600 DOI: 10.1101/Gad.288340.116  0.391
2016 Wu G, Radwan MK, Xiao M, Adachi H, Fan J, Yu YT. The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA. Rna (New York, N.Y.). PMID 27268497 DOI: 10.1261/Rna.056796.116  0.71
2016 Huang C, Wu G, Yu YT. Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles. Methods in Molecular Biology (Clifton, N.J.). 1421: 97-109. PMID 26965260 DOI: 10.1007/978-1-4939-3591-8_9  0.786
2016 Wu G, Adachi H, Ge J, Stephenson D, Query CC, Yu YT. Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly. The Embo Journal. PMID 26873591 DOI: 10.15252/Embj.201593113  0.635
2016 Huang C, Karijolich J, Yu YT. Detection and quantification of RNA 2'-O-methylation and pseudouridylation. Methods (San Diego, Calif.). PMID 26853326 DOI: 10.1016/J.Ymeth.2016.02.003  0.829
2015 Karijolich J, Yi C, Yu YT. Transcriptome-wide dynamics of RNA pseudouridylation. Nature Reviews. Molecular Cell Biology. PMID 26285676 DOI: 10.1038/Nrm4040  0.835
2015 Wu G, Huang C, Yu YT. Pseudouridine in mRNA: Incorporation, Detection, and Recoding. Methods in Enzymology. 560: 187-217. PMID 26253972 DOI: 10.1016/Bs.Mie.2015.03.009  0.749
2015 Enwerem II, Wu G, Yu YT, Hebert MD. Cajal body proteins differentially affect the processing of box C/D scaRNPs. Plos One. 10: e0122348. PMID 25875178 DOI: 10.1371/Journal.Pone.0122348  0.475
2015 Karijolich J, Yu YT. The new era of RNA modification. Rna (New York, N.Y.). 21: 659-60. PMID 25780180 DOI: 10.1261/Rna.049650.115  0.843
2015 Wu G, Huang C, Yu YT. Pseudouridine in mRNA: Incorporation, Detection, and Recoding Methods in Enzymology. 560: 187-217. DOI: 10.1016/bs.mie.2015.03.009  0.47
2014 Yu YT, Meier UT. RNA-guided isomerization of uridine to pseudouridine--pseudouridylation. Rna Biology. 11: 1483-94. PMID 25590339 DOI: 10.4161/15476286.2014.972855  0.624
2014 Lim SJ, Scott A, Xiong XP, Vahidpour S, Karijolich J, Guo D, Pei S, Yu YT, Zhou R, Li WX. Requirement for CRIF1 in RNA interference and Dicer-2 stability. Rna Biology. 11: 1171-9. PMID 25483042 DOI: 10.4161/Rna.34381  0.762
2014 Adachi H, Yu YT. Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation. World Journal of Biological Chemistry. 5: 398-408. PMID 25426264 DOI: 10.4331/Wjbc.V5.I4.398  0.685
2014 Karijolich J, Yu YT. Therapeutic suppression of premature termination codons: mechanisms and clinical considerations (review). International Journal of Molecular Medicine. 34: 355-62. PMID 24939317 DOI: 10.3892/Ijmm.2014.1809  0.715
2014 Adachi H, Yu YT. Purification of radiolabeled RNA products using denaturing gel electrophoresis. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 105: Unit 4.20.. PMID 24510465 DOI: 10.1002/0471142727.Mb0420S105  0.672
2013 Fernández IS, Ng CL, Kelley AC, Wu G, Yu YT, Ramakrishnan V. Unusual base pairing during the decoding of a stop codon by the ribosome. Nature. 500: 107-10. PMID 23812587 DOI: 10.1038/Nature12302  0.588
2013 Huang C, Yu YT. Synthesis and labeling of RNA in vitro. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit4.15. PMID 23547015 DOI: 10.1002/0471142727.Mb0415S102  0.669
2013 Ge J, Yu YT. RNA pseudouridylation: new insights into an old modification. Trends in Biochemical Sciences. 38: 210-8. PMID 23391857 DOI: 10.1016/J.Tibs.2013.01.002  0.683
2012 Huang C, Wu G, Yu YT. Inducing nonsense suppression by targeted pseudouridylation. Nature Protocols. 7: 789-800. PMID 22461068 DOI: 10.1038/Nprot.2012.029  0.793
2011 Yu AT, Ge J, Yu YT. Pseudouridines in spliceosomal snRNAs. Protein & Cell. 2: 712-25. PMID 21976061 DOI: 10.1007/S13238-011-1087-1  0.684
2011 Wu G, Yu AT, Kantartzis A, Yu YT. Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation. Wiley Interdisciplinary Reviews. Rna. 2: 571-81. PMID 21957045 DOI: 10.1002/Wrna.77  0.788
2011 Karijolich J, Yu YT. Converting nonsense codons into sense codons by targeted pseudouridylation. Nature. 474: 395-8. PMID 21677757 DOI: 10.1038/Nature10165  0.777
2011 Huang C, Karijolich J, Yu YT. Post-transcriptional modification of RNAs by artificial Box H/ACA and Box C/D RNPs. Methods in Molecular Biology (Clifton, N.J.). 718: 227-44. PMID 21370052 DOI: 10.1007/978-1-61779-018-8_14  0.837
2011 Wu G, Xiao M, Yang C, Yu YT. U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. The Embo Journal. 30: 79-89. PMID 21131909 DOI: 10.1038/Emboj.2010.316  0.674
2010 Huang C, Yu YT. Targeted 2'-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo. Molecular and Cellular Biology. 30: 4368-78. PMID 20647541 DOI: 10.1128/Mcb.00384-10  0.589
2010 Chen C, Zhao X, Kierzek R, Yu YT. A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo. Molecular and Cellular Biology. 30: 4108-19. PMID 20606010 DOI: 10.1128/Mcb.00531-10  0.637
2010 Karijolich J, Kantartzis A, Yu YT. Quantitative analysis of RNA modifications. Methods in Molecular Biology (Clifton, N.J.). 629: 21-32. PMID 20387140 DOI: 10.1007/978-1-60761-657-3_2  0.823
2010 Karijolich J, Kantartzis A, Yu YT. RNA modifications: a mechanism that modulates gene expression. Methods in Molecular Biology (Clifton, N.J.). 629: 1-19. PMID 20387139 DOI: 10.1007/978-1-60761-657-3_1  0.778
2010 Ge J, Liu H, Yu YT. Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation. Rna (New York, N.Y.). 16: 1078-85. PMID 20348447 DOI: 10.1261/Rna.2060210  0.571
2010 Karijolich J, Yu YT. Spliceosomal snRNA modifications and their function. Rna Biology. 7: 192-204. PMID 20215871 DOI: 10.4161/Rna.7.2.11207  0.821
2009 Xiao M, Yang C, Schattner P, Yu YT. Functionality and substrate specificity of human box H/ACA guide RNAs. Rna (New York, N.Y.). 15: 176-86. PMID 19033376 DOI: 10.1261/Rna.1361509  0.569
2008 Karijolich J, Yu YT. Insight into the Protein Components of the Box H/ACA RNP. Current Proteomics. 5: 129-137. PMID 19829749 DOI: 10.2174/157016408784911936  0.79
2008 Zhao X, Yu YT. Targeted pre-mRNA modification for gene silencing and regulation. Nature Methods. 5: 95-100. PMID 18066073 DOI: 10.1038/Nmeth1142  0.594
2007 Dai Q, Fong R, Saikia M, Stephenson D, Yu YT, Pan T, Piccirilli JA. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Research. 35: 6322-9. PMID 17881375 DOI: 10.1093/Nar/Gkm657  0.62
2007 Karijolich J, Stephenson D, Yu YT. Biochemical purification of box H/ACA RNPs involved in pseudouridylation. Methods in Enzymology. 425: 241-62. PMID 17673087 DOI: 10.1016/S0076-6879(07)25011-6  0.819
2007 Zhao X, Yu YT. Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo. Nucleic Acids Research. 35: 550-8. PMID 17169984 DOI: 10.1093/Nar/Gkl1084  0.431
2006 Moon KH, Zhao X, Yu YT. Pre-mRNA splicing in the nuclei of Xenopus oocytes. Methods in Molecular Biology (Clifton, N.J.). 322: 149-63. PMID 16739722 DOI: 10.1007/978-1-59745-000-3_11  0.609
2005 Ma X, Yang C, Alexandrov A, Grayhack EJ, Behm-Ansmant I, Yu YT. Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism. The Embo Journal. 24: 2403-13. PMID 15962000 DOI: 10.1038/Sj.Emboj.7600718  0.78
2005 Yang C, McPheeters DS, Yu YT. Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 280: 6655-62. PMID 15611063 DOI: 10.1074/jbc.M413288200  0.397
2004 Zhao X, Yu YT. Detection and quantitation of RNA base modifications. Rna (New York, N.Y.). 10: 996-1002. PMID 15146083 DOI: 10.1261/Rna.7110804  0.668
2003 Behm-Ansmant I, Urban A, Ma X, Yu YT, Motorin Y, Branlant C. The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs. Rna (New York, N.Y.). 9: 1371-82. PMID 14561887 DOI: 10.1261/Rna.5520403  0.778
2003 Ma X, Zhao X, Yu YT. Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. The Embo Journal. 22: 1889-97. PMID 12682021 DOI: 10.1093/Emboj/Cdg191  0.688
2002 Zhao X, Li ZH, Terns RM, Terns MP, Yu YT. An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes. Rna (New York, N.Y.). 8: 1515-25. PMID 12515384 DOI: 10.1017/S1355838202022537  0.704
2001 Yu YT, Shu MD, Narayanan A, Terns RM, Terns MP, Steitz JA. Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes. The Journal of Cell Biology. 152: 1279-88. PMID 11257127 DOI: 10.1083/Jcb.152.6.1279  0.612
2000 Yu YT. Site-specific 4-thiouridine incorporation into RNA molecules. Methods in Enzymology. 318: 71-88. PMID 10889981 DOI: 10.1016/S0076-6879(00)18045-0  0.613
1999 Yu YT. Construction of 4-thiouridine site-specifically substituted RNAs for cross-linking studies. Methods (San Diego, Calif.). 18: 13-21. PMID 10208812 DOI: 10.1006/Meth.1999.0752  0.702
1998 Yu YT, Shu MD, Steitz JA. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. The Embo Journal. 17: 5783-95. PMID 9755178 DOI: 10.1093/Emboj/17.19.5783  0.452
1997 Yu YT, Steitz JA. Site-specific crosslinking of mammalian U11 and u6atac to the 5' splice site of an AT-AC intron. Proceedings of the National Academy of Sciences of the United States of America. 94: 6030-5. PMID 9177163 DOI: 10.1073/Pnas.94.12.6030  0.477
1996 Yu YT, Tarn WY, Yario TA, Steitz JA. More Sm snRNAs from vertebrate cells. Experimental Cell Research. 229: 276-81. PMID 8986610 DOI: 10.1006/Excr.1996.0372  0.624
1993 Yu YT, Maroney PA, Nilsen TW. Functional reconstitution of U6 snRNA in nematode cis- and trans-splicing: U6 can serve as both a branch acceptor and a 5' exon. Cell. 75: 1049-59. PMID 8261508 DOI: 10.1016/0092-8674(93)90315-H  0.303
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