Samodha C. Fernando, Ph.D. - Publications

Affiliations: 
2008 Animal Science Oklahoma State University, Stillwater, OK, United States 
Area:
Genetics, Molecular Biology, Microbiology Biology

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Anderson CL, Fernando SC. Insights into rumen microbial biosynthetic gene cluster diversity through genome-resolved metagenomics. Communications Biology. 4: 818. PMID 34188189 DOI: 10.1038/s42003-021-02331-7  0.01
2021 Amachawadi RG, Tom WA, Hays MP, Fernando SC, Hardwidge PR, Nagaraja TG. Bacterial community analysis of purulent material from liver abscesses of crossbred cattle and Holstein steers fed finishing diets with or without tylosin. Journal of Animal Science. PMID 33693672 DOI: 10.1093/jas/skab076  0.01
2021 Bartenslager AC, Althuge ND, Loy JD, Hille MM, Spangler ML, Fernando SC. Longitudinal assessment of the bovine ocular bacterial community dynamics in calves. Animal Microbiome. 3: 16. PMID 33516260 DOI: 10.1186/s42523-021-00079-3  0.01
2021 Yadav P, Antony-Babu S, Hayes E, Healy OM, Pan D, Yang WH, Silver WL, Anderson CL, Voshall A, Fernando SC, Moriyama EN, Herr JR, Weber KA. Complete Genome Sequence of sp. Strain FeAm09, a Moderately Acidophilic Soil Bacterium. Microbiology Resource Announcements. 10. PMID 33446582 DOI: 10.1128/MRA.00979-20  0.01
2020 Aluthge ND, Tom WA, Bartenslager AC, Burkey TE, Miller PS, Heath KD, Kreikemeier-Bower C, Kittana H, Schmaltz RJ, Ramer-Tait AE, Fernando SC. Differential longitudinal establishment of human fecal bacterial communities in germ-free porcine and murine models. Communications Biology. 3: 760. PMID 33311550 DOI: 10.1038/s42003-020-01477-0  0.01
2020 Winders TM, Boyd BM, Hilscher FH, Stowell RR, Fernando SC, Erickson GE. Evaluation of methane production manipulated by level of intake in growing cattle and corn oil in finishing cattle. Translational Animal Science. 4: txaa186. PMID 33241190 DOI: 10.1093/tas/txaa186  0.01
2020 Ribeiro FA, Lau SK, Furbeck RA, Herrera NJ, Henriott ML, Bland NA, Fernando SC, Subbiah J, Sullivan GA, Calkins CR. Ultimate pH effects on dry-aged beef quality. Meat Science. 108365. PMID 33223267 DOI: 10.1016/j.meatsci.2020.108365  0.01
2020 Abbas W, Keel BN, Kachman SD, Fernando SC, Wells JE, Hales KE, Lindholm-Perry AK. Rumen epithelial transcriptome and microbiome profiles of rumen epithelium and contents of beef cattle with and without liver abscesses. Journal of Animal Science. PMID 33170221 DOI: 10.1093/jas/skaa359  0.01
2020 Abbas W, Howard JT, Paz HA, Hales KE, Wells JE, Kuehn LA, Erickson GE, Spangler ML, Fernando SC. Influence of host genetics in shaping the rumen bacterial community in beef cattle. Scientific Reports. 10: 15101. PMID 32934296 DOI: 10.1038/S41598-020-72011-9  0.01
2020 Polepole P, Bartenslager A, Liu Y, Petro TM, Fernando S, Zhang L. Epstein Barr virus-immortalized B lymphocytes exacerbate experimental autoimmune encephalomyelitis in xenograft mice. Journal of Medical Virology. PMID 32543727 DOI: 10.1002/Jmv.26188  0.01
2019 Islam MM, Fernando SC, Saha R. Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions. Frontiers in Microbiology. 10: 2412. PMID 31866953 DOI: 10.3389/Fmicb.2019.02412  0.01
2019 Gebhardt JT, Thomson KA, Woodworth JC, Dritz SS, Tokach MD, DeRouchey JM, Goodband RD, Jones CK, Cochrane RA, Niederwerder MC, Fernando S, Abbas W, Burkey TE. Effect of dietary medium chain fatty acids on nursery pig growth performance, fecal microbial composition, and mitigation properties against porcine epidemic diarrhea virus following storage. Journal of Animal Science. PMID 31758795 DOI: 10.1093/Jas/Skz358  0.01
2019 Zhou F, Paz HA, Sadri M, Cui J, Kachman SD, Fernando SC, Zempleni J. Dietary Bovine Milk Exosomes Elicit Changes in Bacterial Communities in C57BL/6 Mice. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 31509432 DOI: 10.1152/Ajpgi.00160.2019  0.01
2019 Aluthge ND, van Sambeek DM, Hinkle EEC, Li YS, Fernando SC, Burkey TE. The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health. Journal of Animal Science. PMID 31250899 DOI: 10.1093/Jas/Skz208  0.01
2019 Klein C, Gonzalez D, Samwel K, Kahesa C, Mwaiselage J, Aluthge N, Fernando S, West JT, Wood C, Angeletti PC. Relationship between the Cervical Microbiome, HIV Status, and Precancerous Lesions. Mbio. 10. PMID 30782659 DOI: 10.1128/Mbio.02785-18  0.01
2019 Judy JV, Bachman GC, Brown-Brandl TM, Fernando SC, Hales KE, Miller PS, Stowell RR, Kononoff PJ. Reducing methane production with corn oil and calcium sulfate: Responses on whole-animal energy and nitrogen balance in dairy cattle. Journal of Dairy Science. PMID 30612805 DOI: 10.3168/Jds.2018-14567  0.01
2019 Judy JV, Bachman GC, Brown-Brandl TM, Fernando SC, Hales KE, Harvatine KJ, Miller PS, Kononoff PJ. Increasing the concentration of linolenic acid in diets fed to Jersey cows in late lactation does not affect methane production. Journal of Dairy Science. PMID 30612804 DOI: 10.3168/Jds.2018-14608  0.01
2018 Judy JV, Bachman GC, Brown-Brandl TM, Fernando SC, Hales KE, Miller PS, Stowell RR, Kononoff PJ. Energy balance and diurnal variation in methane production as affected by feeding frequency in Jersey cows in late lactation. Journal of Dairy Science. PMID 30268600 DOI: 10.3168/Jds.2018-14596  0.01
2018 Niederwerder MC, Constance LA, Rowland RRR, Abbas W, Fernando SC, Potter ML, Sheahan MA, Burkey TE, Hesse RA, Cino-Ozuna AG. Fecal Microbiota Transplantation Is Associated With Reduced Morbidity and Mortality in Porcine Circovirus Associated Disease. Frontiers in Microbiology. 9: 1631. PMID 30083142 DOI: 10.3389/Fmicb.2018.01631  0.01
2018 Drehmel OR, Brown-Brandl TM, Judy JV, Fernando SC, Miller PS, Hales KE, Kononoff PJ. The influence of fat and hemicellulose on methane production and energy utilization in lactating Jersey cattle. Journal of Dairy Science. PMID 29908813 DOI: 10.3168/Jds.2017-13822  0.01
2018 Williams HE, Cochrane RA, Woodworth JC, DeRouchey JM, Dritz SS, Tokach MD, Jones CK, Fernando SC, Burkey TE, Li YS, Goodband RD, Amachawadi RG. Effects of dietary supplementation of formaldehyde and crystalline amino acids on gut microbial composition of nursery pigs. Scientific Reports. 8: 8164. PMID 29802287 DOI: 10.1038/S41598-018-26540-Z  0.01
2018 Paz HA, Hales KE, Wells JE, Kuehn LA, Freetly HC, Berry ED, Flythe MD, Spangler ML, Fernando SC. Rumen bacterial community structure impacts feed efficiency in beef cattle. Journal of Animal Science. 96: 1045-1058. PMID 29617864 DOI: 10.1093/Jas/Skx081  0.01
2018 Morota G, Ventura RV, Silva FF, Koyama M, Fernando SC. Machine learning and data mining advance predictive big data analysis in precision animal agriculture. Journal of Animal Science. PMID 29385611 DOI: 10.1093/Jas/Sky014  0.01
2018 Tran H, Anderson CL, Bundy JW, Fernando SC, Miller PS, Burkey TE. Effects of Spray-Dried Porcine Plasma on Fecal Microbiota in Nursery Pigs. Journal of Animal Science. PMID 29385463 DOI: 10.1093/Jas/Skx034  0.01
2017 Anderson CL, Sullivan MB, Fernando SC. Dietary energy drives the dynamic response of bovine rumen viral communities. Microbiome. 5: 155. PMID 29179741 DOI: 10.1186/S40168-017-0374-3  0.01
2017 Castillo-Lopez E, Moats J, Aluthge ND, Ramirez Ramirez HA, Christensen DA, Mutsvangwa T, Penner GB, Fernando SC. Effect of partially replacing a barley-based concentrate with flaxseed-based products on the rumen bacterial population of lactating Holstein dairy cows. Journal of Applied Microbiology. PMID 29112793 DOI: 10.1111/Jam.13630  0.01
2017 Castillo-Lopez E, Jenkins CJR, Aluthge ND, Tom W, Kononoff PJ, Fernando SC. The effect of regular or reduced-fat distillers grains with solubles on rumen methanogenesis and the rumen bacterial community. Journal of Applied Microbiology. PMID 28891118 DOI: 10.1111/Jam.13583  0.01
2017 Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE, Tasseva G, Peterson DA, Blom J, Wenzel CQ, Szymanski CM, Walter J. Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species. Applied and Environmental Microbiology. PMID 28389535 DOI: 10.1128/Aem.00132-17  0.01
2016 Walter ME, Ortiz A, Sondgeroth C, Sindt NM, Duszenko N, Catlett JL, Zhou Y, Valloppilly S, Anderson C, Fernando S, Buan NR. High-throughput mutation, selection, and phenotype screening of mutant methanogenic archaea. Journal of Microbiological Methods. PMID 27771305 DOI: 10.1016/J.Mimet.2016.10.010  0.01
2016 Paz HA, Anderson CL, Muller MJ, Kononoff PJ, Fernando SC. Rumen Bacterial Community Composition in Holstein and Jersey Cows Is Different under Same Dietary Condition and Is Not Affected by Sampling Method. Frontiers in Microbiology. 7: 1206. PMID 27536291 DOI: 10.3389/Fmicb.2016.01206  0.01
2016 Xie F, Anderson CL, Timme KR, Kurz SG, Fernando SC, Wood JR. Obesity-Dependent Increases in Oocyte mRNAs are associated with Increases in Pro-Inflammatory Signaling and Gut Microbial Abundance of Lachnospiraceae in Female Mice. Endocrinology. en20151851. PMID 26881311 DOI: 10.1210/En.2015-1851  0.01
2016 Ramirez-Ramirez HA, Castillo Lopez E, Jenkins CJ, Aluthge ND, Anderson C, Fernando SC, Harvatine KJ, Kononoff PJ. Reduced-fat dried distillers grains with solubles reduces the risk for milk fat depression and supports milk production and ruminal fermentation in dairy cows. Journal of Dairy Science. 99: 1912-28. PMID 26805970 DOI: 10.3168/Jds.2015-9712  0.01
2016 Anderson CL, Erickson GE, MacDonald JC, Fernando SC. Rumen bacterial communities can be acclimated faster to high concentrate diets than currently implemented feedlot programs. Journal of Applied Microbiology. PMID 26726754 DOI: 10.1111/Jam.13039  0.01
2016 Ramirez-Ramirez HA, Castillo Lopez E, Jenkins CJR, Aluthge ND, Anderson C, Fernando SC, Harvatine KJ, Kononoff PJ. Reduced-fat dried distillers grains with solubles reduces the risk for milk fat depression and supports milk production and ruminal fermentation in dairy cows Journal of Dairy Science. 99: 1912-1928. DOI: 10.3168/jds.2015-9712  0.6
2015 Har JY, Helbig T, Lim JH, Fernando SC, Reitzel AM, Penn K, Thompson JR. Microbial diversity and activity in the Nematostella vectensis holobiont: Insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression Frontiers in Microbiology. 6. DOI: 10.3389/fmicb.2015.00818  0.6
2015 Boyd BM, Jones A, Franzen-Castle L, Jenkins K, Rasby R, Luebbe M, Stowell R, Fernando SC, Erickson GE. Producer concerns and perceptions regarding the effect of methane on cattle production and the environment: A survey of Nebraska producers Professional Animal Scientist. 31: 601-607. DOI: 10.15232/Pas.2015-01425  0.6
2014 Paz HA, Klopfenstein TJ, Hostetler D, Fernando SC, Castillo-Lopez E, Kononoff PJ. Ruminal degradation and intestinal digestibility of protein and amino acids in high-protein feedstuffs commonly used in dairy diets. Journal of Dairy Science. 97: 6485-98. PMID 25108871 DOI: 10.3168/Jds.2014-8108  0.6
2014 Lo Sasso G, Ryu D, Mouchiroud L, Fernando SC, Anderson CL, Katsyuba E, Piersigilli A, Hottiger MO, Schoonjans K, Auwerx J. Loss of Sirt1 function improves intestinal anti-bacterial defense and protects from colitis-induced colorectal cancer. Plos One. 9: e102495. PMID 25013930 DOI: 10.1371/Journal.Pone.0102495  0.6
2014 Castillo-Lopez E, Ramirez Ramirez HA, Klopfenstein TJ, Anderson CL, Aluthge ND, Fernando SC, Jenkins T, Kononoff PJ. Effect of feeding dried distillers grains with solubles on ruminal biohydrogenation, intestinal fatty acid profile, and gut microbial diversity evaluated through DNA pyro-sequencing. Journal of Animal Science. 92: 733-43. PMID 24664563 DOI: 10.2527/Jas.2013-7223  0.6
2014 Penn K, Wang J, Fernando SC, Thompson JR. Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom. The Isme Journal. 8: 1866-78. PMID 24646695 DOI: 10.1038/Ismej.2014.27  0.6
2014 Castillo-Lopez E, Ramirez Ramirez HA, Klopfenstein TJ, Hostetler D, Karges K, Fernando SC, Kononoff PJ. Ration formulations containing reduced-fat dried distillers grains with solubles and their effect on lactation performance, rumen fermentation, and intestinal flow of microbial nitrogen in Holstein cows. Journal of Dairy Science. 97: 1578-93. PMID 24440246 DOI: 10.3168/Jds.2013-6865  0.6
2014 Castillo-Lopez E, Klopfenstein TJ, Fernando SC, Kononoff PJ. Effect of dried distillers' grains and solubles when replacing corn or soybean meal on rumen microbial growth in vitro as measured using DNA as a microbial marker Canadian Journal of Animal Science. 94: 349-356. DOI: 10.4141/Cjas2013-158  0.6
2013 Castillo-Lopez E, Klopfenstein TJ, Fernando SC, Kononoff PJ. In vivo determination of rumen undegradable protein of dried distillers grains with solubles and evaluation of duodenal microbial crude protein flow. Journal of Animal Science. 91: 924-34. PMID 23148253 DOI: 10.2527/Jas.2012-5323  0.6
2012 Ramirez HAR, Nestor K, Tedeschi LO, Callaway TR, Dowd SE, Fernando SC, Kononoff PJ. The effect of brown midrib corn silage and dried distillers' grains with solubles on milk production, nitrogen utilization and microbial community structure in dairy cows Canadian Journal of Animal Science. 92: 365-380. DOI: 10.4141/Cjas2011-133  0.6
2010 Fernando SC, Purvis HT, Najar FZ, Sukharnikov LO, Krehbiel CR, Nagaraja TG, Roe BA, De Silva U. Rumen microbial population dynamics during adaptation to a high-grain diet Applied and Environmental Microbiology. 76: 7482-7490. PMID 20851965 DOI: 10.1128/Aem.00388-10  0.6
2008 Davis RL, Buck DJ, Saffarian N, Mohan S, DeSilva U, Fernando SC, Stevens CW. Beta-funaltrexamine inhibits inducible nitric-oxide synthase expression in human astroglial cells. Journal of Neuroimmune Pharmacology : the Official Journal of the Society On Neuroimmune Pharmacology. 3: 150-3. PMID 18278557 DOI: 10.1007/S11481-008-9102-X  0.6
2007 Bommineni YR, Dai H, Gong YX, Soulages JL, Fernando SC, Desilva U, Prakash O, Zhang G. Fowlicidin-3 is an alpha-helical cationic host defense peptide with potent antibacterial and lipopolysaccharide-neutralizing activities. The Febs Journal. 274: 418-28. PMID 17229147 DOI: 10.1111/J.1742-4658.2006.05589.X  0.6
2007 Fernando SC, Najar FZ, Guo X, Zhou L, Fu Y, Geisert RD, Roe BA, DeSilva U. Porcine kallikrein gene family: Genomic structure, mapping, and differential expression analysis Genomics. 89: 429-438. PMID 17210241 DOI: 10.1016/J.Ygeno.2006.11.010  0.6
2006 Fernando SC, Buck JS, Ashworth MD, Ross JW, Geisert RD, DeSilva U. Porcine endometrial and conceptus tissue kallikrein 1, 4, 11, and 14 gene expression. Reproduction (Cambridge, England). 132: 939-47. PMID 17127754 DOI: 10.1530/Rep.1.01013  0.6
2006 Xiao Y, Cai Y, Bommineni YR, Fernando SC, Prakash O, Gilliland SE, Zhang G. Identification and functional characterization of three chicken cathelicidins with potent antimicrobial activity. The Journal of Biological Chemistry. 281: 2858-67. PMID 16326712 DOI: 10.1074/Jbc.M507180200  0.6
2004 Vonnahme KA, Fernando SC, Ross JW, Ashworth MD, DeSilva U, Malayer JR, Geisert RD. Porcine endometrial expression of kininogen, factor XII, and plasma kallikrein in cyclic and pregnant gilts. Biology of Reproduction. 70: 132-8. PMID 13679312 DOI: 10.1095/Biolreprod.103.020412  0.6
2003 DeSilva U, Guo X, Kupfer DM, Fernando SC, Pillai ATV, Najar FZ, So S, Fitch GQ, Roe BA. Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep Cytogenetic and Genome Research. 102: 89-94. PMID 14970685 DOI: 10.1159/000075731  0.6
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