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Hosein Mohimani, Ph.D. - Publications

Affiliations: 
2013 Electrical Engineering University of California, San Diego, La Jolla, CA 
Area:
Bioinformatics Biology, Pharmacy
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee YY, Guler M, Chigumba DN, Wang S, Mittal N, Miller C, Krummenacher B, Liu H, Cao L, Kannan A, Narayan K, Slocum ST, Roth BL, Gurevich A, Behsaz B, ... ... Mohimani H, et al. HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search. Nature Communications. 14: 4219. PMID 37452020 DOI: 10.1038/s41467-023-39905-4  0.426
2021 Kunyavskaya O, Tagirdzhanov AM, Caraballo-Rodríguez AM, Nothias LF, Dorrestein PC, Korobeynikov A, Mohimani H, Gurevich A. Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides. Metabolites. 11. PMID 34677408 DOI: 10.3390/metabo11100693  0.436
2021 Behsaz B, Bode E, Gurevich A, Shi YN, Grundmann F, Acharya D, Caraballo-Rodríguez AM, Bouslimani A, Panitchpakdi M, Linck A, Guan C, Oh J, Dorrestein PC, Bode HB, Pevzner PA, ... Mohimani H, et al. Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. Nature Communications. 12: 4318. PMID 34238936 DOI: 10.1038/s41467-021-24441-w  0.37
2021 Behsaz B, Bode E, Gurevich A, Shi YN, Grundmann F, Acharya D, Caraballo-Rodríguez AM, Bouslimani A, Panitchpakdi M, Linck A, Guan C, Oh J, Dorrestein PC, Bode HB, Pevzner PA, ... Mohimani H, et al. Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. Nature Communications. 12: 3225. PMID 34050176 DOI: 10.1038/s41467-021-23502-4  0.406
2020 Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, ... ... Mohimani H, et al. Feature-based molecular networking in the GNPS analysis environment. Nature Methods. PMID 32839597 DOI: 10.1038/S41592-020-0933-6  0.348
2020 van der Hooft JJJ, Mohimani H, Bauermeister A, Dorrestein PC, Duncan KR, Medema MH. Linking genomics and metabolomics to chart specialized metabolic diversity. Chemical Society Reviews. PMID 32393943 DOI: 10.1039/D0Cs00162G  0.368
2019 Behsaz B, Mohimani H, Gurevich A, Prjibelski A, Fisher M, Vargas F, Smarr L, Dorrestein PC, Mylne JS, Pevzner PA. De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments. Cell Systems. PMID 31864964 DOI: 10.1016/J.Cels.2019.11.007  0.493
2019 Cao L, Gurevich A, Alexander KL, Naman CB, Leão T, Glukhov E, Luzzatto-Knaan T, Vargas F, Quinn R, Bouslimani A, Nothias LF, Singh NK, Sanders JG, Benitez RAS, Thompson LR, ... ... Mohimani H, et al. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities. Cell Systems. PMID 31629686 DOI: 10.1016/J.Cels.2019.09.004  0.528
2019 Cao L, Shcherbin E, Mohimani H. A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota. Msystems. 4. PMID 31455639 DOI: 10.1128/mSystems.00387-19  0.33
2019 Meleshko D, Mohimani H, Traccana V, Hajirasouliha I, Medema MH, Korobeynikov A, Pevzner PA. BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs. Genome Research. PMID 31160374 DOI: 10.1101/Gr.243477.118  0.317
2018 Mohimani H, Gurevich A, Shlemov A, Mikheenko A, Korobeynikov A, Cao L, Shcherbin E, Nothias LF, Dorrestein PC, Pevzner PA. Dereplication of microbial metabolites through database search of mass spectra. Nature Communications. 9: 4035. PMID 30279420 DOI: 10.1038/S41467-018-06082-8  0.487
2018 Gurevich A, Mikheenko A, Shlemov A, Korobeynikov A, Mohimani H, Pevzner PA. Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra. Nature Microbiology. PMID 29358742 DOI: 10.1038/S41564-017-0094-2  0.504
2017 Edlund A, Garg N, Mohimani H, Gurevich A, He X, Shi W, Dorrestein PC, McLean JS. Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules. Msystems. 2. PMID 28761934 DOI: 10.1128/mSystems.00058-17  0.383
2016 Mohimani H, Gurevich A, Mikheenko A, Garg N, Nothias LF, Ninomiya A, Takada K, Dorrestein PC, Pevzner PA. Dereplication of peptidic natural products through database search of mass spectra. Nature Chemical Biology. PMID 27820803 DOI: 10.1038/Nchembio.2219  0.542
2016 Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, ... ... Mohimani H, et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature Biotechnology. 34: 828-837. PMID 27504778 DOI: 10.1038/Nbt.3597  0.378
2015 Mohimani H, Pevzner PA. Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks. Natural Product Reports. PMID 26497201 DOI: 10.1039/C5Np00050E  0.539
2014 Mohimani H, Liu WT, Kersten RD, Moore BS, Dorrestein PC, Pevzner PA. NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery. Journal of Natural Products. PMID 25116163 DOI: 10.1021/Np500370C  0.517
2014 Mohimani H, Kersten RD, Liu WT, Wang M, Purvine SO, Wu S, Brewer HM, Pasa-Tolic L, Bandeira N, Moore BS, Pevzner PA, Dorrestein PC. Automated genome mining of ribosomal peptide natural products. Acs Chemical Biology. 9: 1545-51. PMID 24802639 DOI: 10.1021/Cb500199H  0.563
2013 Mohimani H, Kim S, Pevzner PA. A new approach to evaluating statistical significance of spectral identifications. Journal of Proteome Research. 12: 1560-8. PMID 23343606 DOI: 10.1021/Pr300453T  0.49
2012 Mohimani H, Kim S, Pevzner PA. MS-DPR: An algorithm for computing statistical significance of spectral identifications of non-linear peptides Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7534: 301-313. DOI: 10.1007/978-3-642-33122-0_24  0.338
2011 Mohimani H, Liu WT, Yang YL, Gaudêncio SP, Fenical W, Dorrestein PC, Pevzner PA. Multiplex de novo sequencing of peptide antibiotics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1371-81. PMID 22035290 DOI: 10.1089/Cmb.2011.0158  0.486
2011 Mohimani H, Liu WT, Mylne JS, Poth AG, Colgrave ML, Tran D, Selsted ME, Dorrestein PC, Pevzner PA. Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases. Journal of Proteome Research. 10: 4505-12. PMID 21851130 DOI: 10.1021/Pr200323A  0.497
2011 Mohimani H, Yang YL, Liu WT, Hsieh PW, Dorrestein PC, Pevzner PA. Sequencing cyclic peptides by multistage mass spectrometry. Proteomics. 11: 3642-50. PMID 21751357 DOI: 10.1002/Pmic.201000697  0.478
2011 Mevers E, Liu WT, Engene N, Mohimani H, Byrum T, Pevzner PA, Dorrestein PC, Spadafora C, Gerwick WH. Cytotoxic veraguamides, alkynyl bromide-containing cyclic depsipeptides from the marine cyanobacterium cf. Oscillatoria margaritifera. Journal of Natural Products. 74: 928-36. PMID 21488639 DOI: 10.1021/Np200077F  0.307
2011 Mohimani H, Liu W, Mylne JS, Poth AG, Colgrave ML, Tran D, Selsted ME, Dorrestein PC, Pevzner PA. Cycloquest: Identification of Cyclopeptides via Database Search of Their Mass Spectra against Genome Databases (vol 10, pg 4505, 2010) Journal of Proteome Research. 10: 5575-5575. DOI: 10.1021/Pr201019Q  0.393
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