Lee Kerkhof - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Microbiology Biology, Environmental Sciences

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Janabi AH, Kerkhof LJ, McGuinness LR, Biddle AS, McKeever KH. Comparison of a modified phenol/chloroform and commercial-kit methods for extracting DNA from horse fecal material. Journal of Microbiological Methods. PMID 27460337 DOI: 10.1016/j.mimet.2016.07.019  1
2016 Nikrad MP, Kerkhof LJ, Häggblom MM. The subzero microbiome: Microbial activity in frozen and thawing soils. Fems Microbiology Ecology. PMID 27106051 DOI: 10.1093/femsec/fiw081  1
2016 Campbell SC, Wisniewski PJ, Noji M, McGuinness LR, Häggblom MM, Lightfoot SA, Joseph LB, Kerkhof LJ. The Effect of Diet and Exercise on Intestinal Integrity and Microbial Diversity in Mice. Plos One. 11: e0150502. PMID 26954359 DOI: 10.1371/journal.pone.0150502  1
2016 Liu T, Ahn H, Sun W, McGuinness L, Kerkhof LJ, Haggblom MM. Identification of a Ruminococcaceae species as the methyl tert-butyl ether (MTBE) degrading bacterium in a methanogenic consortium. Environmental Science & Technology. PMID 26727046 DOI: 10.1021/acs.est.5b04731  1
2015 Tuorto SJ, Brown CM, Bidle KD, McGuinness LR, Kerkhof LJ. BioDry: An Inexpensive, Low-Power Method to Preserve Aquatic Microbial Biomass at Room Temperature. Plos One. 10: e0144686. PMID 26710122 DOI: 10.1371/Journal.Pone.0144686  1
2015 McGuinness LR, Wilkins MJ, Williams KH, Long PE, Kerkhof LJ. Identification of Bacteria Synthesizing Ribosomal RNA in Response to Uranium Addition During Biostimulation at the Rifle, CO Integrated Field Research Site. Plos One. 10: e0137270. PMID 26382047 DOI: 10.1371/journal.pone.0137270  1
2015 Sun W, Li Y, McGuinness LR, Luo S, Huang W, Kerkhof LJ, Mack EE, Häggblom MM, Fennell DE. Identification of Anaerobic Aniline-Degrading Bacteria at a Contaminated Industrial Site. Environmental Science & Technology. 49: 11079-88. PMID 26280684 DOI: 10.1021/Acs.Est.5B02166  1
2015 Koribanics NM, Tuorto SJ, Lopez-Chiaffarelli N, McGuinness LR, Häggblom MM, Williams KH, Long PE, Kerkhof LJ. Spatial distribution of an uranium-respiring betaproteobacterium at the Rifle, CO field research site. Plos One. 10: e0123378. PMID 25874721 DOI: 10.1371/Journal.Pone.0123378  1
2014 Seyler LM, McGuinness LM, Kerkhof LJ. Crenarchaeal heterotrophy in salt marsh sediments. The Isme Journal. 8: 1534-43. PMID 24553469 DOI: 10.1038/ismej.2014.15  1
2014 Tuorto SJ, Darias P, McGuinness LR, Panikov N, Zhang T, Häggblom MM, Kerkhof LJ. Bacterial genome replication at subzero temperatures in permafrost. The Isme Journal. 8: 139-49. PMID 23985750 DOI: 10.1038/Ismej.2013.140  1
2014 Krumins V, Mainelis G, Kerkhof LJ, Fennell DE. Substrate-Dependent rRNA Production in an Airborne Bacterium Environmental Science and Technology Letters. 1: 376-381. DOI: 10.1021/Ez500245Y  1
2014 Sipler RE, McGuinness LR, Kirkpatrick GJ, Kerkhof LJ, Schofield OM. Bacteriocidal effects of brevetoxin on natural microbial communities Harmful Algae. 38: 101-109. DOI: 10.1016/J.Hal.2014.04.009  1
2013 Wang Y, Wiatrowski HA, John R, Lin CC, Young LY, Kerkhof LJ, Yee N, Barkay T. Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments. Biodegradation. 24: 33-46. PMID 22678127 DOI: 10.1007/S10532-012-9555-8  1
2013 Sipler RE, Bronk DA, Seitzinger SP, Lauck RJ, McGuinness LR, Kirkpatrick GJ, Heil CA, Kerkhof LJ, Schofield OM. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis Marine Ecology Progress Series. 483: 31-45. DOI: 10.3354/Meps10258  1
2011 Akob DM, Kerkhof L, Küsel K, Watson DB, Palumbo AV, Kostka JE. Linking specific heterotrophic bacterial populations to bioreduction of uranium and nitrate in contaminated subsurface sediments by using stable isotope probing. Applied and Environmental Microbiology. 77: 8197-200. PMID 21948831 DOI: 10.1128/Aem.05247-11  1
2011 Kerkhof LJ, Williams KH, Long PE, McGuinness LR. Phase preference by active, acetate-utilizing bacteria at the rifle, CO integrated field research challenge site. Environmental Science & Technology. 45: 1250-6. PMID 21226528 DOI: 10.1021/es102893r  1
2011 Park JW, Krumins V, Kjellerup BV, Fennell DE, Rodenburg LA, Sowers KR, Kerkhof LJ, Häggblom MM. The effect of co-substrate activation on indigenous and bioaugmented PCB dechlorinating bacterial communities in sediment microcosms Applied Microbiology and Biotechnology. 89: 2005-2017. PMID 21046375 DOI: 10.1007/S00253-010-2958-8  1
2011 Williams KH, Long PE, Davis JA, Wilkins MJ, N'Guessan AL, Steefel CI, Yang L, Newcomer D, Spane FA, Kerkhof LJ, Mcguinness L, Dayvault R, Lovley DR. Acetate availability and its influence on sustainable bioremediation of Uranium-contaminated groundwater Geomicrobiology Journal. 28: 519-539. DOI: 10.1080/01490451.2010.520074  1
2010 Moon HS, McGuinness L, Kukkadapu RK, Peacock AD, Komlos J, Kerkhof LJ, Long PE, Jaffé PR. Microbial reduction of uranium under iron- and sulfate-reducing conditions: Effect of amended goethite on microbial community composition and dynamics Water Research. 44: 4015-4028. PMID 20541787 DOI: 10.1016/J.Watres.2010.05.003  1
2010 Youngster LK, Kerkhof LJ, Häggblom MM. Community characterization of anaerobic methyl tert-butyl ether (MTBE)-degrading enrichment cultures. Fems Microbiology Ecology. 72: 279-88. PMID 20180853 DOI: 10.1111/j.1574-6941.2010.00841.x  1
2010 Gallagher EM, Young LY, McGuinness LM, Kerkhof LJ. Detection of 2,4,6-trinitrotoluene-utilizing anaerobic bacteria by 15N and 13C incorporation. Applied and Environmental Microbiology. 76: 1695-8. PMID 20081008 DOI: 10.1128/Aem.02274-09  1
2010 Bradley PB, Sanderson MP, Frischer ME, Brofft J, Booth MG, Kerkhof LJ, Bronk DA. Inorganic and organic nitrogen uptake by phytoplankton and heterotrophic bacteria in the stratified Mid-Atlantic Bight Estuarine, Coastal and Shelf Science. 88: 429-441. DOI: 10.1016/J.Ecss.2010.02.001  1
2009 Krumins V, Park JW, Son EK, Rodenburg LA, Kerkhof LJ, Häggblom MM, Fennell DE. PCB dechlorination enhancement in Anacostia River sediment microcosms. Water Research. 43: 4549-58. PMID 19744693 DOI: 10.1016/J.Watres.2009.08.003  1
2009 Ahn YB, Kerkhof LJ, Häggblom MM. Desulfoluna spongiiphila sp. nov., a dehalogenating bacterium in the Desulfobacteraceae from the marine sponge Aplysina aerophoba. International Journal of Systematic and Evolutionary Microbiology. 59: 2133-9. PMID 19605712 DOI: 10.1099/ijs.0.005884-0  1
2009 Lachmayr KL, Kerkhof LJ, Dirienzo AG, Cavanaugh CM, Ford TE. Quantifying nonspecific TEM beta-lactamase (blaTEM) genes in a wastewater stream. Applied and Environmental Microbiology. 75: 203-11. PMID 18997031 DOI: 10.1128/Aem.01254-08  1
2009 Kerkhof LJ, Goodman RM. Ocean microbial metagenomics Deep-Sea Research Part Ii: Topical Studies in Oceanography. 56: 1824-1829. DOI: 10.1016/J.Dsr2.2009.05.005  1
2008 Oka AR, Phelps CD, McGuinness LM, Mumford A, Young LY, Kerkhof LJ. Identification of critical members in a sulfidogenic benzene-degrading consortium by DNA stable isotope probing. Applied and Environmental Microbiology. 74: 6476-80. PMID 18757571 DOI: 10.1128/Aem.01082-08  1
2008 Nelson JD, Boehme SE, Reimers CE, Sherrell RM, Kerkhof LJ. Temporal patterns of microbial community structure in the Mid-Atlantic Bight. Fems Microbiology Ecology. 65: 484-93. PMID 18662312 DOI: 10.1111/J.1574-6941.2008.00553.X  1
2008 Mills HJ, Hunter E, Humphrys M, Kerkhof L, McGuinness L, Huettel M, Kostka JE. Characterization of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico. Applied and Environmental Microbiology. 74: 4440-53. PMID 18487394 DOI: 10.1128/Aem.02692-07  1
2008 Akob DM, Mills HJ, Gihring TM, Kerkhof L, Stucki JW, Anastácio AS, Chin KJ, Küsel K, Palumbo AV, Watson DB, Kostka JE. Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments. Applied and Environmental Microbiology. 74: 3159-70. PMID 18378664 DOI: 10.1128/Aem.02881-07  1
2007 Babcock DA, Wawrik B, Paul JH, McGuinness L, Kerkhof LJ. Rapid screening of a large insert BAC library for specific 16S rRNA genes using TRFLP Journal of Microbiological Methods. 71: 156-161. PMID 17888534 DOI: 10.1016/j.mimet.2007.07.015  1
2007 Ahn YB, Häggblom MM, Kerkhof LJ. Comparison of anaerobic microbial communities from Estuarine sediments amended with halogenated compounds to enhance dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin. Fems Microbiology Ecology. 61: 362-71. PMID 17578521 DOI: 10.1111/j.1574-6941.2007.00342.x  1
2007 Wawrik B, Kutliev D, Abdivasievna UA, Kukor JJ, Zylstra GJ, Kerkhof L. Biogeography of actinomycete communities and type II polyketide synthase genes in soils collected in New Jersey and Central Asia. Applied and Environmental Microbiology. 73: 2982-9. PMID 17337547 DOI: 10.1128/Aem.02611-06  1
2006 McGuinness LM, Salganik M, Vega L, Pickering KD, Kerkhof LJ. Replicability of bacterial communities in denitrifying bioreactors as measured by PCR/T-RFLP analysis. Environmental Science & Technology. 40: 509-15. PMID 16468396 DOI: 10.1021/Es050900L  1
2005 Wawrik B, Kerkhof L, Kukor J, Zylstra G. Effect of different carbon sources on community composition of bacterial enrichments from soil. Applied and Environmental Microbiology. 71: 6776-83. PMID 16269709 DOI: 10.1128/Aem.71.11.6776-6783.2005  1
2005 Gallagher E, McGuinness L, Phelps C, Young LY, Kerkhof LJ. 13C-carrier DNA shortens the incubation time needed to detect benzoate-utilizing denitrifying bacteria by stable-isotope probing Applied and Environmental Microbiology. 71: 5192-5196. PMID 16151104 DOI: 10.1128/Aem.71.9.5192-5196.2005  1
2005 Matos A, Kerkhof L, Garland JL. Effects of microbial community diversity on the survival of Pseudomonas aeruginosa in the wheat rhizosphere Microbial Ecology. 49: 257-264. PMID 15965723 DOI: 10.1007/s00248-004-0179-3  1
2005 Wawrik B, Kerkhof L, Zylstra GJ, Kukor JJ. Identification of unique type II polyketide synthase genes in soil. Applied and Environmental Microbiology. 71: 2232-8. PMID 15870305 DOI: 10.1128/Aem.71.5.2232-2238.2005  1
2005 Pérez-Jiménez JR, Kerkhof LJ. Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB). Applied and Environmental Microbiology. 71: 1004-11. PMID 15691959 DOI: 10.1128/AEM.71.2.1004-1011.2005  1
2004 Corredor JE, Wawrik B, Paul JH, Tran H, Kerkhof L, López JM, Dieppa A, Cárdenas O. Geochemical rate-RNA integration study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs. Applied and Environmental Microbiology. 70: 5459-68. PMID 15345433 DOI: 10.1128/Aem.70.9.5459-5468.2004  1
2004 Fennell DE, Rhee SK, Ahn YB, Häggblom MM, Kerkhof LJ. Detection and Characterization of a Dehalogenating Microorganism by Terminal Restriction Fragment Length Polymorphism Fingerprinting of 16S rRNA in a Sulfidogenic, 2-Bromophenol-Utilizing Enrichment Applied and Environmental Microbiology. 70: 1169-1175. PMID 14766602 DOI: 10.1128/Aem.70.2.1169-1175.2004  1
2004 Vega LM, Kerkhof L, Mcguinness L, Pickering KD. Evaluation of performance of five parallel biological water processors Sae Technical Papers. DOI: 10.4271/2004-01-2515  1
2003 Rhee SK, Fennell DE, Häggblom MM, Kerkhof LJ. Detection by PCR of reductive dehalogenase motifs in a sulfidogenic 2-bromophenol-degrading consortium enriched from estuarine sediment. Fems Microbiology Ecology. 43: 317-24. PMID 19719663 DOI: 10.1111/J.1574-6941.2003.Tb01072.X  1
2003 Häggblom MM, Ahn YB, Fennell DE, Kerkhof LJ, Rhee SK. Anaerobic dehalogenation of organohalide contaminants in the marine environment. Advances in Applied Microbiology. 53: 61-84. PMID 14696316 DOI: 10.1016/S0065-2164(03)53002-7  1
2003 Vetriani C, Tran HV, Kerkhof LJ. Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea. Applied and Environmental Microbiology. 69: 6481-8. PMID 14602603 DOI: 10.1128/Aem.69.11.6481-6488.2003  1
2003 Ahn YB, Rhee SK, Fennell DE, Kerkhof LJ, Hentschel U, Häggblom MM. Reductive dehalogenation of brominated phenolic compounds by microorganisms associated with the marine sponge Aplysina aerophoba. Applied and Environmental Microbiology. 69: 4159-66. PMID 12839794 DOI: 10.1128/Aem.69.7.4159-4166.2003  1
2003 McGuinness L, Kerkhof LJ, Vega L, Pickering K. Assessment of microbial community variability in replicate tubular nitrifying bioreactors using PCR and TRFLP analysis Sae Technical Papers. DOI: 10.4271/2003-01-2511  1
2003 Kerkhof L, Corredor J, López J, Paul J, Bronk D, Cherrier J. Experiment explores inter-calibration of biogeochemical flux and nucleic acid measurements Eos. 84: 167.  1
2002 Paerl HW, Dyble J, Twomey L, Pinckney JL, Nelson J, Kerkhof L. Characterizing man-made and natural modifications of microbial diversity and activity in coastal ecosystems. Antonie Van Leeuwenhoek. 81: 487-507. PMID 12448745 DOI: 10.1023/A:1020561422706  1
2002 Song B, Kerkhof LJ, Häggblom MM. Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions. Fems Microbiology Letters. 213: 183-8. PMID 12167535 DOI: 10.1111/J.1574-6968.2002.Tb11303.X  1
2002 Sakano Y, Pickering KD, Strom PF, Kerkhof LJ. Spatial distribution of total, ammonia-oxidizing, and denitrifying bacteria in biological wastewater treatment reactors for bioregenerative life support. Applied and Environmental Microbiology. 68: 2285-93. PMID 11976099 DOI: 10.1128/Aem.68.5.2285-2293.2002  1
2002 Knight VK, Nijenhuis I, Kerkhof LJ, Häggblom MM. Degradation of aromatic compounds coupled to selenate reduction Geomicrobiology Journal. 19: 77-86. DOI: 10.1080/014904502317246183  1
2001 Garland JL, Cook KL, Adams JL, Kerkhof L. Culturability as an indicator of succession in microbial communities Microbial Ecology. 42: 150-158. PMID 11680502 DOI: 10.1007/S00248-001-0002-3  1
2001 Song B, Palleroni NJ, Kerkhof LJ, Häggblom MM. Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov. International Journal of Systematic and Evolutionary Microbiology. 51: 589-602. PMID 11321105 DOI: 10.1099/00207713-51-2-589  1
2001 Pérez-Jiménez JR, Young LY, Kerkhof LJ. Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes Fems Microbiology Ecology. 35: 145-150. DOI: 10.1016/S0168-6496(00)00123-9  1
2000 Scala DJ, Kerkhof LJ. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Applied and Environmental Microbiology. 66: 1980-6. PMID 10788370 DOI: 10.1128/AEM.66.5.1980-1986.2000  1
2000 Kerkhof L, Santoro M, Garland J. Response of soybean rhizosphere communities to human hygiene water addition as determined by community level physiological profiling (CLPP) and terminal restriction fragment length polymorphism (TRFLP) analysis Fems Microbiology Letters. 184: 95-101. PMID 10689173 DOI: 10.1111/J.1574-6968.2000.Tb08997.X  1
2000 Häggblom MM, Knight VK, Kerkhof LJ. Anaerobic decomposition of halogenated aromatic compounds Environmental Pollution. 107: 199-207. DOI: 10.1016/S0269-7491(99)00138-4  1
1999 Scala DJ, Kerkhof LJ. Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Applied and Environmental Microbiology. 65: 1681-7. PMID 10103268  1
1999 Kerkhof L, Kemp P. Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth Fems Microbiology Ecology. 30: 253-260. DOI: 10.1111/J.1574-6941.1999.Tb00653.X  1
1999 Kerkhof LJ, Voytek MA, Sherrell RM, Millie D, Schofield O. Variability in bacterial community structure during upwelling in the coastal ocean Hydrobiologia. 401: 139-148. DOI: 10.1023/A:1003734310515  1
1999 Knight VK, Kerkhof LJ, Häggblom MM. Community analyses of sulfidogenic 2-bromophenol-dehalogenating and phenol-degrading microbial consortia Fems Microbiology Ecology. 29: 137-147. DOI: 10.1016/S0168-6496(99)00006-9  1
1998 Sakano Y, Kerkhof L. Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools. Applied and Environmental Microbiology. 64: 4877-82. PMID 9835577 DOI: 10.1128/Aem.64.12.4877-4882.1998  1
1998 Scala DJ, Kerkhof LJ. Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. Fems Microbiology Letters. 162: 61-8. PMID 9595664 DOI: 10.1016/S0378-1097(98)00103-7  1
1998 Phelps CD, Kerkhof LJ, Young LY. Molecular characterization of a sulfate-reducing consortium which mineralizes benzene Fems Microbiology Ecology. 27: 269-279. DOI: 10.1111/J.1574-6941.1998.Tb00543.X  1
1997 Kerkhof L, Speck M. Ribosomal RNA gene dosage in marine bacteria Molecular Marine Biology and Biotechnology. 6: 260-267. PMID 9284564  1
1997 Kerkhof L. A ribosomal RNA operon from Pseudomonas stutzeri Zobell Gene. 192: 241-243. PMID 9224896 DOI: 10.1016/S0378-1119(97)00081-4  1
1997 Kerkhof L. Quantification of total RNA by ethidium bromide fluorescence may not accurately reflect the RNA mass Journal of Biochemical and Biophysical Methods. 34: 147-154. PMID 9178090 DOI: 10.1016/S0165-022X(97)01212-8  1
1994 Kerkhof L. A species-specific probe and a PCR assay for the marine bacterium, Pseudomonas stutzeri strain Zobell Microbial Ecology. 27: 201-212. DOI: 10.1007/Bf00182405  1
1993 Kerkhof L, Ward BB. Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium Applied and Environmental Microbiology. 59: 1303-1309.  1
1992 Kerkhof L. A comparison of substrates for quantifying the signal from a nonradiolabeled DNA probe Analytical Biochemistry. 205: 359-364. PMID 1443585 DOI: 10.1016/0003-2697(92)90448-G  1
1991 Reeburgh WS, Ward BB, Whalen SC, Sandbeck KA, Kilpatrick KA, Kerkhof LJ. Black Sea methane geochemistry Deep-Sea Research, Part A. 38.  1
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