Holly A. Wichman - Publications

University of Idaho, Moscow, ID, United States 
Genetics, Microbiology Biology, Molecular Biology

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Miller CR, Nagel AC, Scott L, Settles M, Joyce P, Wichman HA. Love the one you're with: replicate viral adaptations converge on the same phenotypic change. Peerj. 4: e2227. PMID 27547540 DOI: 10.7717/Peerj.2227  0.84
2016 Brown CJ, Quates CJ, Mirabzadeh CA, Miller CR, Wichman HA, Miura TA, Ytreberg FM. New Perspectives on Ebola Virus Evolution. Plos One. 11: e0160410. PMID 27479005 DOI: 10.1371/Journal.Pone.0160410  0.84
2016 Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, Ytreberg FM. Initiating a watch list for Ebola virus antibody escape mutations. Peerj. 4: e1674. PMID 26925318 DOI: 10.7717/Peerj.1674  0.84
2015 Sotero-Caio CG, Volleth M, Hoffmann FG, Scott L, Wichman HA, Yang F, Baker RJ. Integration of molecular cytogenetics, dated molecular phylogeny, and model-based predictions to understand the extreme chromosome reorganization in the Neotropical genus Tonatia (Chiroptera: Phyllostomidae). Bmc Evolutionary Biology. 15: 220. PMID 26444412 DOI: 10.1186/S12862-015-0494-Y  0.84
2014 Miller CR, Lee KH, Wichman HA, Ytreberg FM. Changing folding and binding stability in a viral coat protein: a comparison between substitutions accessible through mutation and those fixed by natural selection. Plos One. 9: e112988. PMID 25405628 DOI: 10.1371/Journal.Pone.0112988  0.84
2014 McLaughlin RN, Young JM, Yang L, Neme R, Wichman HA, Malik HS. Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency. Plos Genetics. 10: e1004531. PMID 25211013 DOI: 10.1371/Journal.Pgen.1004531  0.84
2014 Yang L, Brunsfeld J, Scott L, Wichman H. Reviving the dead: history and reactivation of an extinct l1. Plos Genetics. 10: e1004395. PMID 24968166 DOI: 10.1371/Journal.Pgen.1004395  0.84
2014 Sun C, Wyngaard G, Walton DB, Wichman HA, Mueller RL. Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development. Bmc Genomics. 15: 186. PMID 24618421 DOI: 10.1186/1471-2164-15-186  0.84
2014 Ally D, Wiss VR, Deckert GE, Green D, Roychoudhury P, Wichman HA, Brown CJ, Krone SM. The impact of spatial structure on viral genomic diversity generated during adaptation to thermal stress. Plos One. 9: e88702. PMID 24533140 DOI: 10.1371/Journal.Pone.0088702  0.84
2013 Brown CJ, Millstein J, Williams CJ, Wichman HA. Selection affects genes involved in replication during long-term evolution in experimental populations of the bacteriophage φX174. Plos One. 8: e60401. PMID 23533679 DOI: 10.1371/Journal.Pone.0060401  0.84
2012 Nagel AC, Joyce P, Wichman HA, Miller CR. Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution. Genetics. 190: 655-67. PMID 22095084 DOI: 10.1534/Genetics.111.132134  0.84
2011 Lee KH, Miller CR, Nagel AC, Wichman HA, Joyce P, Ytreberg FM. First-step mutations for adaptation at elevated temperature increase capsid stability in a virus. Plos One. 6: e25640. PMID 21980515 DOI: 10.1371/Journal.Pone.0025640  0.84
2011 Erickson IK, Cantrell MA, Scott L, Wichman HA. Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents. Journal of Virology. 85: 12315-23. PMID 21957310 DOI: 10.1128/Jvi.05180-11  0.84
2011 Rokyta DR, Joyce P, Caudle SB, Miller C, Beisel CJ, Wichman HA. Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus. Plos Genetics. 7: e1002075. PMID 21655079 DOI: 10.1371/Journal.Pgen.1002075  0.84
2011 Miller CR, Joyce P, Wichman HA. Mutational effects and population dynamics during viral adaptation challenge current models. Genetics. 187: 185-202. PMID 21041559 DOI: 10.1534/Genetics.110.121400  0.84
2010 Wichman HA, Brown CJ. Experimental evolution of viruses: Microviridae as a model system. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2495-501. PMID 20643739 DOI: 10.1098/Rstb.2010.0053  0.84
2009 Rokyta DR, Wichman HA. Genic incompatibilities in two hybrid bacteriophages. Molecular Biology and Evolution. 26: 2831-9. PMID 19726536 DOI: 10.1093/Molbev/Msp199  0.84
2009 Cherwa JE, Sanchez-Soria P, Wichman HA, Fane BA. Viral adaptation to an antiviral protein enhances the fitness level to above that of the uninhibited wild type. Journal of Virology. 83: 11746-50. PMID 19726521 DOI: 10.1128/Jvi.01297-09  0.84
2009 Rokyta DR, Abdo Z, Wichman HA. The genetics of adaptation for eight microvirid bacteriophages. Journal of Molecular Evolution. 69: 229-39. PMID 19693424 DOI: 10.1007/S00239-009-9267-9  0.84
2009 Cantrell MA, Carstens BC, Wichman HA. X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity. Plos One. 4: e6252. PMID 19603076 DOI: 10.1371/Journal.Pone.0006252  0.84
2009 Coberly LC, Wei W, Sampson KY, Millstein J, Wichman HA, Krone SM. Space, time, and host evolution facilitate coexistence of competing bacteriophages: theory and experiment. The American Naturalist. 173: E121-38. PMID 19226233 DOI: 10.1086/597226  0.84
2008 Rokyta DR, Beisel CJ, Joyce P, Ferris MT, Burch CL, Wichman HA. Beneficial fitness effects are not exponential for two viruses. Journal of Molecular Evolution. 67: 368-76. PMID 18779988 DOI: 10.1007/S00239-008-9153-X  0.84
2008 Pepin KM, Wichman HA. Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174. Bmc Evolutionary Biology. 8: 85. PMID 18366653 DOI: 10.1186/1471-2148-8-85  0.84
2008 Cantrell MA, Scott L, Brown CJ, Martinez AR, Wichman HA. Loss of LINE-1 activity in the megabats. Genetics. 178: 393-404. PMID 18202382 DOI: 10.1534/Genetics.107.080275  0.84
2007 Pepin KM, Wichman HA. Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage. Evolution; International Journal of Organic Evolution. 61: 1710-24. PMID 17598750 DOI: 10.1111/J.1558-5646.2007.00143.X  0.84
2007 Beisel CJ, Rokyta DR, Wichman HA, Joyce P. Testing the extreme value domain of attraction for distributions of beneficial fitness effects. Genetics. 176: 2441-9. PMID 17565958 DOI: 10.1534/Genetics.106.068585  0.84
2006 Bull JJ, Millstein J, Orcutt J, Wichman HA. Evolutionary feedback mediated through population density, illustrated with viruses in chemostats The American Naturalist. 167: E39-51. PMID 16670974 DOI: 10.1086/499374  0.84
2006 Scott LA, Kuroiwa A, Matsuda Y, Wichman HA. X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO. Cytogenetic and Genome Research. 112: 261-9. PMID 16484782 DOI: 10.1159/000089880  0.84
2006 Rokyta DR, Burch CL, Caudle SB, Wichman HA. Horizontal gene transfer and the evolution of microvirid coliphage genomes. Journal of Bacteriology. 188: 1134-42. PMID 16428417 DOI: 10.1128/Jb.188.3.1134-1142.2006  0.84
2006 Pepin KM, Samuel MA, Wichman HA. Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component. Genetics. 172: 2047-56. PMID 16361237 DOI: 10.1534/Genetics.105.049817  0.84
2005 Cantrell MA, Ederer MM, Erickson IK, Swier VJ, Baker RJ, Wichman HA. MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers. Journal of Virology. 79: 14698-707. PMID 16282470 DOI: 10.1128/Jvi.79.23.14698-14707.2005  0.84
2005 Rinehart TA, Grahn RA, Wichman HA. SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms. Cytogenetic and Genome Research. 110: 416-25. PMID 16093694 DOI: 10.1159/000084974  0.84
2005 Grahn RA, Rinehart TA, Cantrell MA, Wichman HA. Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents. Cytogenetic and Genome Research. 110: 407-15. PMID 16093693 DOI: 10.1159/000084973  0.84
2005 Rokyta DR, Joyce P, Caudle SB, Wichman HA. An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus. Nature Genetics. 37: 441-4. PMID 15778707 DOI: 10.1038/Ng1535  0.84
2005 Wichman HA, Millstein J, Bull JJ. Adaptive molecular evolution for 13,000 phage generations: A possible arms race Genetics. 170: 19-31. PMID 15687276 DOI: 10.1534/Genetics.104.034488  0.84
2002 Parish DA, Vise P, Wichman HA, Bull JJ, Baker RJ. Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation. Cytogenetic and Genome Research. 96: 191-7. PMID 12438798 DOI: 10.1159/000063038  0.84
2001 Cantrell MA, Filanoski BJ, Ingermann AR, Olsson K, DiLuglio N, Lister Z, Wichman HA. An ancient retrovirus-like element contains hot spots for SINE insertion Genetics. 158: 769-777. PMID 11404340  0.84
2001 Bull JJ, Wichman HA. Applied evolution Annual Review of Ecology and Systematics. 32: 183-217. DOI: 10.1146/annurev.ecolsys.32.081501.114020  0.84
2000 Wichman HA, Scott LA, Yarber CD, Bull JJ. Experimental evolution recapitulates natural evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 1677-84. PMID 11127915 DOI: 10.1098/Rstb.2000.0731  0.84
2000 Cantrell MA, Grahn RA, Scott L, Wichman HA. Isolation of markers from recently transposed LINE-1 retrotransposons. Biotechniques. 29: 1310-6. PMID 11126134 DOI: 10.2144/00296Rr02  0.84
2000 Bull JJ, Badgett MR, Wichman HA. Big-benefit mutations in a bacteriophage inhibited with heat Molecular Biology and Evolution. 17: 942-950. PMID 10833201 DOI: 10.1093/Oxfordjournals.Molbev.A026375  0.84
2000 Casavant NC, Scott L, Cantrell MA, Wiggins LE, Baker RJ, Wichman HA. The end of the LINE?: Lack of recent L1 activity in a group of South American rodents Genetics. 154: 1809-1817. PMID 10747071  0.84
2000 Crill WD, Wichman HA, Bull JJ. Evolutionary reversals during viral adaptation to alternating hosts. Genetics. 154: 27-37. PMID 10628966  0.84
1999 Wichman HA, Badgett MR, Scott LA, Boulianne CM, Bull JJ. Different trajectories of parallel evolution during viral adaptation. Science (New York, N.Y.). 285: 422-4. PMID 10411508 DOI: 10.1126/Science.285.5426.422  0.84
1998 Bull J, Wichman H. A revolution in evolution Science. 281: 1959. PMID 9767038 DOI: 10.1126/Science.281.5385.1959  0.84
1998 Casavant NC, Lee RN, Sherman AN, Wichman HA. Molecular evolution of two lineages of L1 (LINE-1) retrotransposons in the California mouse, Peromyscus californicus Genetics. 150: 345-357. PMID 9725851  0.84
1997 Bull JJ, Badgett MR, Wichman HA, Huelsenbeck JP, Hillis DM, Gulati A, Ho C, Molineux IJ. Exceptional convergent evolution in a virus. Genetics. 147: 1497-507. PMID 9409816  0.84
1997 Sawby R, Wichman HA. Analysis of orthologous retrovirus-like elements in the white-footed mouse, Peromyscus leucopus Journal of Molecular Evolution. 44: 74-80. PMID 9010138 DOI: 10.1007/Pl00006123  0.84
1996 Casavant NC, Sherman AN, Wichman HA. Two persistent LINE-1 lineages in Peromyscus have unequal rates of evolution Genetics. 142: 1289-1298. PMID 8846905  0.84
1996 Clough JE, Foster JA, Barnett M, Wichman HA. Computer simulation of transposable element evolution: random template and strict master models. Journal of Molecular Evolution. 42: 52-8. PMID 8576964 DOI: 10.1007/Bf00163211  0.84
1996 Lee RN, Jaskula JC, van den Bussche RA, Baker RJ, Wichman HA. Retrotransposon Mys was active during evolution of the Peromyscus leucopus-maniculatus complex. Journal of Molecular Evolution. 42: 44-51. PMID 8576963 DOI: 10.1007/Bf00163210  0.84
1994 Bradley RD, Wichman HA. Rapidly evolving repetitive DNAs in a conservative genome: a test of factors that affect chromosomal evolution. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 2: 354-60. PMID 7981939 DOI: 10.1007/Bf01552794  0.84
1994 Edwards AR, Van den Bussche RA, Wichman HA, Orser CS. Unusual pattern of bacterial ice nucleation gene evolution. Molecular Biology and Evolution. 11: 911-20. PMID 7815929 DOI: 10.1093/Oxfordjournals.Molbev.A040172  0.84
1993 Van den Bussche RA, Baker RJ, Wichman HA, Hamilton MJ. Molecular phylogenetics of Stenodermatini bat genera: congruence of data from nuclear and mitochondrial DNA. Molecular Biology and Evolution. 10: 944-59. PMID 8412654 DOI: 10.1093/Oxfordjournals.Molbev.A040060  0.84
1993 Janecek LL, Longmire JL, Wichman HA, Baker RJ. Genome organization of repetitive elements in the rodent, Peromyscus leucopus Mammalian Genome. 4: 374-381. PMID 8395263 DOI: 10.1007/Bf00360588  0.84
1993 Martin SL, Wichman HA. Molecular approaches to mammalian retrotransposon isolation Methods in Enzymology. 224: 309-322. PMID 7505378 DOI: 10.1016/0076-6879(93)24023-N  0.84
1992 Hamilton MJ, Hong G, Wichman HA. Intragenomic movement and concerted evolution of satellite DNA in Peromyscus: Evidence from in situ hybridization Cytogenetics and Cell Genetics. 60: 40-44. PMID 1582258 DOI: 10.1159/000133292  0.84
1992 Wichman HA, Van Den Bussche RA. In search of retrotransposons: exploring the potential of the PCR. Biotechniques. 13: 258-65. PMID 1382466  0.84
1992 Wichman HA, Van den Bussche RA, Hamilton MJ, Baker RJ. Transposable elements and the evolution of genome organization in mammals. Genetica. 86: 287-93. PMID 1334913 DOI: 10.1007/Bf00133727  0.84
1991 Wichman HA, Lynch CB. Genetic variation for seasonal adaptation in Peromyscus leucopus: nonreciprocal breakdown in a population cross. The Journal of Heredity. 82: 197-204. PMID 2061592 DOI: 10.1093/Oxfordjournals.Jhered.A111065  0.84
1991 Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ. Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution Journal of Heredity. 82: 369-377. PMID 1658126 DOI: 10.1093/Oxfordjournals.Jhered.A111106  0.84
1985 Wichman HA, Potter SS, Pine DS. Mys, a family of mammalian transposable elements isolated by phylogenetic screening Nature. 317: 77-81. PMID 2993916 DOI: 10.1038/317077A0  0.84
1982 Gram WD, Heath HW, Wichman HA, Lynch GR. Geographic variation in peromyscus leucopus: Short-day induced reproductive regression and spontaneous recrudescence Biology of Reproduction. 27: 369-373. PMID 7126737  0.84
1981 Lynch GR, Wichman HA. Reproduction and thermoregulation in Peromyscus: Effects of chronic short days Physiology and Behavior. 26: 201-205. PMID 7232525 DOI: 10.1016/0031-9384(81)90012-3  0.84
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