Patricia L. Whetzel, Ph.D. - Publications

Affiliations: 
2000 University of Delaware, Newark, DE, United States 
Area:
Microbiology Biology, Animal Culture and Nutrition Agriculture, Food Science and Technology Agriculture

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, et al. High-performance web services for querying gene and variant annotation. Genome Biology. 17: 91. PMID 27154141 DOI: 10.1186/s13059-016-0953-9  0.6
2016 Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, ... ... Whetzel PL, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/journal.pone.0154556  0.6
2015 Whetzel PL, Grethe JS, Banks DE, Martone ME. The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. Plos One. 10: e0136206. PMID 26393351 DOI: 10.1371/journal.pone.0136206  0.6
2014 Whetzel PL, Grethe JS, Bandrowski A, Banks D, Condit C, Gupta A, Larson SD, Li Y, Ozyurt B, Stagg A, Martone ME, Marenco L, Miller PL, Wang R, Shepherd GM. SciCrunch: A cooperative and collaborative data and resource discovery platform for scientific communities Ceur Workshop Proceedings. 1327: 102-103.  0.6
2013 Whetzel PL. NCBO Technology: Powering semantically aware applications. Journal of Biomedical Semantics. 4: S8. PMID 23734708 DOI: 10.1186/2041-1480-4-S1-S8  0.6
2013 Maguire E, González-Beltrán A, Whetzel PL, Sansone SA, Rocca-Serra P. OntoMaton: a bioportal powered ontology widget for Google Spreadsheets. Bioinformatics (Oxford, England). 29: 525-7. PMID 23267176 DOI: 10.1093/bioinformatics/bts718  0.6
2013 Noy NF, Alexander PR, Harpaz R, Whetzel PL, Fergerson RW, Musen MA. Getting lucky in ontology search: A data-driven evaluation framework for ontology ranking Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8218: 444-459. DOI: 10.1007/978-3-642-41335-3_28  0.6
2013 Kocbek S, Kim JD, Perret JL, Whetzel PL. Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse Ceur Workshop Proceedings. 1060: 34-39.  0.6
2012 Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/amiajnl-2011-000523  0.6
2011 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research. 39: W541-5. PMID 21672956 DOI: 10.1093/nar/gkr469  0.6
2011 Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denney CK, Domarew C, Gambet T, Harland L, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Lebo T, Marshall SM, ... ... Whetzel PL, et al. The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. Journal of Biomedical Semantics. 2: S1. PMID 21624155 DOI: 10.1186/2041-1480-2-S2-S1  0.6
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, ... ... Whetzel PL, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/database/baq027  0.6
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, ... ... Whetzel PL, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/nar/gkq1173  0.6
2011 Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, et al. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics. 44: 137-45. PMID 20955817 DOI: 10.1016/j.jbi.2010.10.003  0.6
2011 Rocca-Serra P, Ruttenberg A, O'Connor MJ, Whetzel PL, Schober D, Greenbaum J, Courtot M, Brinkman RR, Sansone SA, Scheuermann R, Peters B. Overcoming the ontology enrichment bottleneck with Quick Term Templates Applied Ontology. 6: 13-22. DOI: 10.3233/AO-2011-0086  0.6
2011 Alexander PR, Nyulas C, Tudorache T, Whetzel PL, Noy NF, Musen MA. Semantic infrastructure to enable collaboration in ontology development Proceedings of the 2011 International Conference On Collaboration Technologies and Systems, Cts 2011. 423-430. DOI: 10.1109/CTS.2011.5928720  0.6
2011 Whetzel PL, Jonquet C, Youn C, Dorf M, Fergerson R, Musen M, Shah N. The NCBO annotator: Ontology-based annotation as a web service Ceur Workshop Proceedings. 833: 302-303.  0.6
2010 Kettner C, Field D, Sansone SA, Taylor C, Aerts J, Binns N, Blake A, Britten CM, de Marco A, Fostel J, Gaudet P, González-Beltrán A, Hardy N, Hellemans J, Hermjakob H, ... ... Whetzel PL, et al. Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Standards in Genomic Sciences. 3: 259-66. PMID 21304730 DOI: 10.4056/sigs.147362  0.6
2009 Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 37: W170-3. PMID 19483092 DOI: 10.1093/nar/gkp440  0.6
2007 Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, ... ... Whetzel PL, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 25: 1251-5. PMID 17989687 DOI: 10.1038/nbt1346  0.6
2007 Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK, Laursen K, ... ... Whetzel PL, et al. The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nature Biotechnology. 25: 1127-33. PMID 17921998 DOI: 10.1038/nbt1347  0.6
2006 Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ, White J, ... Whetzel PL, et al. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. Bmc Bioinformatics. 7: 489. PMID 17087822 DOI: 10.1186/1471-2105-7-489  0.6
2006 Whetzel PL, Parkinson H, Stoeckert CJ. Using ontologies to annotate microarray experiments. Methods in Enzymology. 411: 325-39. PMID 16939798 DOI: 10.1016/S0076-6879(06)11017-4  0.6
2006 Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D, Fostel J, Fragoso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone SA, Schober D, et al. Development of FuGO: an ontology for functional genomics investigations. Omics : a Journal of Integrative Biology. 10: 199-204. PMID 16901226 DOI: 10.1089/omi.2006.10.199  0.6
2006 Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ. The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (Oxford, England). 22: 866-73. PMID 16428806 DOI: 10.1093/bioinformatics/btl005  0.6
2004 Manduchi E, Grant GR, He H, Liu J, Mailman MD, Pizarro AD, Whetzel PL, Stoeckert CJ. RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. Bioinformatics (Oxford, England). 20: 452-9. PMID 14990441 DOI: 10.1093/bioinformatics/btg428  0.6
2003 Whetzel PL, Hnatow LL, Keeler CL, Dohms JE. Transposon mutagenesis of Mycoplasma gallisepticum. Plasmid. 49: 34-43. PMID 12583999 DOI: 10.1016/S0147-619X(02)00114-2  0.6
1996 Keeler CL, Hnatow LL, Whetzel PL, Dohms JE. Cloning and characterization of a putative cytadhesin gene (mgc1) from Mycoplasma gallisepticum. Infection and Immunity. 64: 1541-7. PMID 8613358  0.6
Show low-probability matches.