| Year |
Citation |
Score |
| 2020 |
Moisseyev G, Park K, Cui A, Freitas D, Rajagopal D, Konda AR, Martin-Olenski M, Mcham M, Liu K, Du Q, Schnable JC, Moriyama EN, Cahoon EB, Zhang C. RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum. Database : the Journal of Biological Databases and Curation. 2020. PMID 32500918 DOI: 10.1093/Database/Baaa038 |
0.38 |
|
| 2019 |
Voshall A, Moriyama EN. Next-generation transcriptome assembly and analysis: impact of ploidy. Methods (San Diego, Calif.). PMID 31176772 DOI: 10.1016/J.Ymeth.2019.06.001 |
0.407 |
|
| 2017 |
Keel BN, Deng B, Moriyama EN. MOCASSIN-prot: A Multi-Objective Clustering Approach for Protein Similarity Networks. Bioinformatics (Oxford, England). PMID 29186344 DOI: 10.1093/Bioinformatics/Btx755 |
0.363 |
|
| 2017 |
Wang H, Eyun SI, Arora K, Tan SY, Gandra P, Moriyama E, Khajuria C, Jurzenski J, Li H, Donahue M, Narva K, Siegfried B. Patterns of Gene Expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, Challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, Based on Next-Generation Sequencing. Toxins. 9. PMID 28358336 DOI: 10.3390/Toxins9040124 |
0.712 |
|
| 2016 |
Gradnigo JS, Majumdar A, Norgren RB, Moriyama EN. Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses. Plos One. 11: e0167376. PMID 27911958 DOI: 10.1371/Journal.Pone.0167376 |
0.462 |
|
| 2016 |
Massilamany C, Mohammed A, Loy JD, Purvis T, Krishnan B, Basavalingappa RH, Kelley CM, Guda C, Barletta RG, Moriyama EN, Smith TP, Reddy J. Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe. Bmc Genomics. 17: 511. PMID 27557119 DOI: 10.1186/S12864-016-2900-2 |
0.333 |
|
| 2016 |
Gradnigo JS, Somerville GA, Huether MJ, Kemmy RJ, Johnson CM, Oliver MG, Moriyama EN. Genome Sequence of Streptomyces aureofaciens ATCC Strain 10762. Genome Announcements. 4. PMID 27340076 DOI: 10.1128/Genomea.00615-16 |
0.345 |
|
| 2016 |
Eyun SI, Moriyama H, Hoffmann FG, Moriyama EN. Molecular Evolution and Functional Divergence of Trace Amine-Associated Receptors. Plos One. 11: e0151023. PMID 26963722 DOI: 10.1371/Journal.Pone.0151023 |
0.728 |
|
| 2015 |
Nanoth Vellichirammal N, Wang H, Eyun SI, Moriyama EN, Coates BS, Miller NJ, Siegfried BD. Transcriptional analysis of susceptible and resistant European corn borer strains and their response to Cry1F protoxin. Bmc Genomics. 16: 558. PMID 26220297 DOI: 10.1186/S12864-015-1751-6 |
0.635 |
|
| 2015 |
McCarthy S, Gradnigo J, Johnson T, Payne S, Lipzen A, Martin J, Schackwitz W, Moriyama E, Blum P. Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives. Genome Announcements. 3. PMID 26021927 DOI: 10.1128/Genomea.00549-15 |
0.356 |
|
| 2014 |
Maudhoo MD, Ren D, Gradnigo JS, Gibbs RM, Lubker AC, Moriyama EN, French JA, Norgren RB. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Gigascience. 3: 14. PMID 25243066 DOI: 10.1186/2047-217X-3-14 |
0.401 |
|
| 2014 |
Eyun SI, Wang H, Pauchet Y, Ffrench-Constant RH, Benson AK, Valencia-Jiménez A, Moriyama EN, Siegfried BD. Molecular evolution of glycoside hydrolase genes in the Western corn rootworm (Diabrotica virgifera virgifera). Plos One. 9: e94052. PMID 24718603 DOI: 10.1371/Journal.Pone.0094052 |
0.691 |
|
| 2013 |
Zheng X, Moriyama EN. Comparative studies of differential gene calling using RNA-Seq data. Bmc Bioinformatics. 14: S7. PMID 24267181 DOI: 10.1186/1471-2105-14-S13-S7 |
0.309 |
|
| 2013 |
Shah N, Gaupp R, Moriyama H, Eskridge KM, Moriyama EN, Somerville GA. Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus. Bmc Genomics. 14: 524. PMID 23902280 DOI: 10.1186/1471-2164-14-524 |
0.313 |
|
| 2013 |
Ma X, Kim EJ, Kook I, Ma F, Voshall A, Moriyama E, Cerutti H. Small interfering RNA-mediated translation repression alters ribosome sensitivity to inhibition by cycloheximide in Chlamydomonas reinhardtii. The Plant Cell. 25: 985-98. PMID 23512853 DOI: 10.1105/Tpc.113.109256 |
0.315 |
|
| 2013 |
Deng B, Hinds B, Zheng X, Moriyama EN. Bioinformatic Game Theory and Its Application to Biological Affinity Networks Applied Mathematics. 4: 92-108. DOI: 10.4236/Am.2013.410A2010 |
0.363 |
|
| 2012 |
Shah N, Dorer DR, Moriyama EN, Christensen AC. Evolution of a large, conserved, and syntenic gene family in insects. G3 (Bethesda, Md.). 2: 313-9. PMID 22384409 DOI: 10.1534/G3.111.001412 |
0.462 |
|
| 2011 |
Klopffleisch K, Phan N, Augustin K, Bayne RS, Booker KS, Botella JR, Carpita NC, Carr T, Chen JG, Cooke TR, Frick-Cheng A, Friedman EJ, Fulk B, Hahn MG, Jiang K, ... ... Moriyama EN, et al. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Molecular Systems Biology. 7: 532. PMID 21952135 DOI: 10.1038/Msb.2011.66 |
0.379 |
|
| 2011 |
Anderson CL, Strope CL, Moriyama EN. SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation. Bmc Bioinformatics. 12: 184. PMID 21600033 DOI: 10.1186/1471-2105-12-184 |
0.321 |
|
| 2011 |
Strope PK, Nickerson KW, Harris SD, Moriyama EN. Molecular evolution of urea amidolyase and urea carboxylase in fungi. Bmc Evolutionary Biology. 11: 80. PMID 21447149 DOI: 10.1186/1471-2148-11-80 |
0.754 |
|
| 2010 |
Opiyo SO, Pardy RL, Moriyama H, Moriyama EN. Evolution of the Kdo2-lipid A biosynthesis in bacteria. Bmc Evolutionary Biology. 10: 362. PMID 21106097 DOI: 10.1186/1471-2148-10-362 |
0.63 |
|
| 2010 |
Prokupek AM, Eyun SI, Ko L, Moriyama EN, Harshman LG. Molecular evolutionary analysis of seminal receptacle sperm storage organ genes of Drosophila melanogaster. Journal of Evolutionary Biology. 23: 1386-98. PMID 20500366 DOI: 10.1111/J.1420-9101.2010.01998.X |
0.704 |
|
| 2010 |
Opiyo SO, Moriyama EN. Mining Cytochrome b561 proteins from plant genomes. International Journal of Bioinformatics Research and Applications. 6: 209-21. PMID 20223741 DOI: 10.1504/Ijbra.2010.032122 |
0.71 |
|
| 2010 |
Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, Roos S, Walter J. Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. The Isme Journal. 4: 377-87. PMID 19924154 DOI: 10.1038/Ismej.2009.123 |
0.301 |
|
| 2009 |
Strope CL, Abel K, Scott SD, Moriyama EN. Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0. Molecular Biology and Evolution. 26: 2581-93. PMID 19651852 DOI: 10.1093/Molbev/Msp174 |
0.357 |
|
| 2009 |
Lu G, Wang Z, Jones AM, Moriyama EN. 7TMRmine: a Web server for hierarchical mining of 7TMR proteins. Bmc Genomics. 10: 275. PMID 19538753 DOI: 10.1186/1471-2164-10-275 |
0.422 |
|
| 2009 |
Opiyo SO, Moriyama EN. Mining the Arabidopsis and rice genomes for cyclophilin protein families. International Journal of Bioinformatics Research and Applications. 5: 295-309. PMID 19525202 DOI: 10.1504/Ijbra.2009.026421 |
0.715 |
|
| 2008 |
Prokupek A, Hoffmann F, Eyun SI, Moriyama E, Zhou M, Harshman L. An evolutionary expressed sequence tag analysis of Drosophila spermatheca genes. Evolution; International Journal of Organic Evolution. 62: 2936-47. PMID 18752616 DOI: 10.1111/J.1558-5646.2008.00493.X |
0.689 |
|
| 2008 |
Veerappan CS, Avramova Z, Moriyama EN. Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi. Bmc Evolutionary Biology. 8: 190. PMID 18593478 DOI: 10.1186/1471-2148-8-190 |
0.371 |
|
| 2007 |
Vicario S, Moriyama EN, Powell JR. Codon usage in twelve species of Drosophila. Bmc Evolutionary Biology. 7: 226. PMID 18005411 DOI: 10.1186/1471-2148-7-226 |
0.375 |
|
| 2007 |
Johnston CA, Temple BR, Chen JG, Gao Y, Moriyama EN, Jones AM, Siderovski DP, Willard FS. Comment on "A G protein coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid". Science (New York, N.Y.). 318: 914; author reply 91. PMID 17991845 DOI: 10.1126/Science.1143230 |
0.362 |
|
| 2007 |
Strope PK, Moriyama EN. Simple alignment-free methods for protein classification: a case study from G-protein-coupled receptors. Genomics. 89: 602-12. PMID 17336495 DOI: 10.1016/J.Ygeno.2007.01.008 |
0.753 |
|
| 2007 |
Xia X, Huang H, Carullo M, Betrán E, Moriyama EN. Conflict between translation initiation and elongation in vertebrate mitochondrial genomes. Plos One. 2: e227. PMID 17311091 DOI: 10.1371/Journal.Pone.0000227 |
0.36 |
|
| 2007 |
Opiyo SO, Moriyama EN. Protein family classification with partial least squares. Journal of Proteome Research. 6: 846-53. PMID 17269741 DOI: 10.1021/Pr060534K |
0.714 |
|
| 2007 |
Strope CL, Scott SD, Moriyama EN. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels. Molecular Biology and Evolution. 24: 640-9. PMID 17158778 DOI: 10.1093/Molbev/Msl195 |
0.43 |
|
| 2006 |
Lu G, Jiang L, Helikar RM, Rowley TW, Zhang L, Chen X, Moriyama EN. GenomeBlast: a web tool for small genome comparison. Bmc Bioinformatics. 7: S18. PMID 17217510 DOI: 10.1186/1471-2105-7-S4-S18 |
0.407 |
|
| 2006 |
Moriyama EN, Strope PK, Opiyo SO, Chen Z, Jones AM. Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors. Genome Biology. 7: R96. PMID 17064408 DOI: 10.1186/Gb-2006-7-10-R96 |
0.729 |
|
| 2004 |
Sainz AC, Mauro LV, Moriyama EN, García BA. Phylogeny of triatomine vectors of Trypanosoma cruzi suggested by mitochondrial DNA sequences. Genetica. 121: 229-40. PMID 15521421 DOI: 10.1023/B:Gene.0000039842.82574.02 |
0.34 |
|
| 2003 |
Powell JR, Sezzi E, Moriyama EN, Gleason JM, Caccone A. Analysis of a shift in codon usage in Drosophila. Journal of Molecular Evolution. 57: S214-25. PMID 15008418 DOI: 10.1007/S00239-003-0030-3 |
0.347 |
|
| 2003 |
Dorer DR, Rudnick JA, Moriyama EN, Christensen AC. A family of genes clustered at the Triplo-lethal locus of Drosophila melanogaster has an unusual evolutionary history and significant synteny with Anopheles gambiae. Genetics. 165: 613-21. PMID 14573474 |
0.324 |
|
| 2000 |
Kim J, Moriyama EN, Warr CG, Clyne PJ, Carlson JR. Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties. Bioinformatics (Oxford, England). 16: 767-75. PMID 11108699 |
0.323 |
|
| 1999 |
Caccone A, Garcia BA, Mathiopoulos KD, Min GS, Moriyama EN, Powell JR. Characterization of the soluble guanylyl cyclase β-subunit gene in the mosquito Anopheles gambiae Insect Molecular Biology. 8: 23-30. PMID 9927171 DOI: 10.1046/J.1365-2583.1999.810023.X |
0.416 |
|
| 1998 |
Moriyama EN, Powell JR. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli Nucleic Acids Research. 26: 3188-3193. PMID 9628917 DOI: 10.1093/Nar/26.13.3188 |
0.39 |
|
| 1997 |
Gleason JM, Caccone A, Moriyama EN, White KP, Powell JR. MITOCHONDRIAL DNA PHYLOGENIES FOR THE DROSOPHILA OBSCURA GROUP. Evolution; International Journal of Organic Evolution. 51: 433-440. PMID 28565356 DOI: 10.1111/J.1558-5646.1997.Tb02430.X |
0.324 |
|
| 1997 |
Moriyama EN, Powell JR. Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes Journal of Molecular Evolution. 45: 378-391. PMID 9321417 DOI: 10.1007/Pl00006243 |
0.319 |
|
| 1997 |
Powell JR, Moriyama EN. Evolution of codon usage bias in Drosophila Proceedings of the National Academy of Sciences of the United States of America. 94: 7784-7790. PMID 9223264 DOI: 10.1073/Pnas.94.15.7784 |
0.37 |
|
| 1996 |
Caccone A, Moriyama EN, Gleason JM, Nigro L, Powell JR. A molecular phylogeny for the Drosophila melanogaster subgroup and the problem of polymorphism data. Molecular Biology and Evolution. 13: 1224-32. PMID 8896375 DOI: 10.1093/Oxfordjournals.Molbev.A025688 |
0.325 |
|
| 1996 |
Nurminsky DI, Moriyama EN, Lozovskaya ER, Hartl DL. Molecular phylogeny and genome evolution in the Drosophila virilis species group: duplications of the alcohol dehydrogenase gene. Molecular Biology and Evolution. 13: 132-49. PMID 8583887 DOI: 10.1093/Oxfordjournals.Molbev.A025551 |
0.403 |
|
| 1993 |
Moriyama EN, Hartl DL. Codon usage bias and base composition of nuclear genes in Drosophila Genetics. 134: 847-858. PMID 8349115 |
0.301 |
|
| 1992 |
Mizuno T, Saito Y, Itakura M, Ito F, Ito T, Moriyama EN, Hagiwara H, Hirose S. Structure of the bovine ETB endothelin receptor gene Biochemical Journal. 287. PMID 1417782 DOI: 10.1042/Bj2870305 |
0.398 |
|
| 1990 |
Gojobori T, Moriyama EN, Ina Y, Ikeo K, Miura T, Tsujimoto H, Hayami M, Yokoyama S. Evolutionary origin of human and simian immunodeficiency viruses Proceedings of the National Academy of Sciences of the United States of America. 87: 4108-4111. PMID 1693430 DOI: 10.1073/Pnas.87.11.4108 |
0.325 |
|
| 1989 |
Shimizu N, Okamoto T, Moriyama EN, Takeuchi Y, Gojobori T, Hoshino H. Patterns of nucleotide substitutions and implications for the immunological diversity of human immunodeficiency virus Febs Letters. 250: 591-595. PMID 2753154 DOI: 10.1016/0014-5793(89)80802-6 |
0.3 |
|
| 1989 |
Moriyama EN, Gojobori T. Evolution of nested genes with special reference to cuticle proteins in Drosophila melanogaster Journal of Molecular Evolution. 28: 391-397. PMID 2501500 DOI: 10.1007/Bf02603074 |
0.402 |
|
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