Barry G. Hall - Publications

University of Rochester, Rochester, NY 
Microbiology Biology, Genetics

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Mira P, Barlow M, Meza JC, Hall BG. Statistical Package for Growth Rates Made Easy. Molecular Biology and Evolution. PMID 29029174 DOI: 10.1093/Molbev/Msx255  0.534
2017 Ankrum A, Hall BG. Population dynamics of Staphylococcus aureus in Cystic Fibrosis patients to determine transmission events utilizing WGS. Journal of Clinical Microbiology. PMID 28446577 DOI: 10.1128/Jcm.00164-17  0.326
2014 Hall BG, Acar H, Nandipati A, Barlow M. Growth rates made easy. Molecular Biology and Evolution. 31: 232-8. PMID 24170494 DOI: 10.1093/Molbev/Mst187  0.531
2013 Hall BG, Cardenas H, Barlow M. Using complete genome comparisons to identify sequences whose presence accurately predicts clinically important phenotypes. Plos One. 8: e68901. PMID 23935901 DOI: 10.1371/Journal.Pone.0068901  0.583
2013 Hall BG, Kirkup BC, Riley MC, Barlow M. Clustering acinetobacter strains by optical mapping. Genome Biology and Evolution. 5: 1176-84. PMID 23739739 DOI: 10.1093/Gbe/Evt085  0.535
2013 Hall BG. Building phylogenetic trees from molecular data with MEGA. Molecular Biology and Evolution. 30: 1229-35. PMID 23486614 DOI: 10.1093/Molbev/Mst012  0.306
2013 Goulart CP, Mahmudi M, Crona KA, Jacobs SD, Kallmann M, Hall BG, Greene DC, Barlow M. Designing antibiotic cycling strategies by determining and understanding local adaptive landscapes. Plos One. 8: e56040. PMID 23418506 DOI: 10.1371/Journal.Pone.0056040  0.584
2012 Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, et al. Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars. Journal of Bacteriology. 194: 3922-37. PMID 22609915 DOI: 10.1128/Jb.00056-12  0.331
2010 Hall BG, Ehrlich GD, Hu FZ. Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing. Microbiology (Reading, England). 156: 1060-8. PMID 20019077 DOI: 10.1099/Mic.0.035188-0  0.338
2009 Hall BG, Pikis A, Thompson J. Evolution and biochemistry of family 4 glycosidases: implications for assigning enzyme function in sequence annotations. Molecular Biology and Evolution. 26: 2487-97. PMID 19625389 DOI: 10.1093/Molbev/Msp162  0.307
2008 Hall BG. Simulating DNA coding sequence evolution with EvolveAGene 3. Molecular Biology and Evolution. 25: 688-95. PMID 18192698 DOI: 10.1093/Molbev/Msn008  0.316
2008 Hall BG, Barlow M. Barlow-Hall in vitro Evolution Protocol Nature Precedings. 3: 1-1. DOI: 10.1038/Npre.2008.1772.1  0.552
2006 Hall BG, Barlow M. Phylogenetic analysis as a tool in molecular epidemiology of infectious diseases. Annals of Epidemiology. 16: 157-69. PMID 16099674 DOI: 10.1016/J.Annepidem.2005.04.010  0.552
2005 Garau G, Di Guilmi AM, Hall BG. Structure-based phylogeny of the metallo-beta-lactamases. Antimicrobial Agents and Chemotherapy. 49: 2778-84. PMID 15980349 DOI: 10.1128/Aac.49.7.2778-2784.2005  0.379
2005 Hall BG, Barlow M. Revised Ambler classification of {beta}-lactamases. The Journal of Antimicrobial Chemotherapy. 55: 1050-1. PMID 15872044 DOI: 10.1093/Jac/Dki130  0.549
2005 Hall BG. Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences. Molecular Biology and Evolution. 22: 792-802. PMID 15590907 DOI: 10.1093/Molbev/Msi066  0.31
2004 Hall BG, Salipante SJ, Barlow M. Independent origins of subgroup B1 + B2 and subgroup B3 metallo-β-lactamases Journal of Molecular Evolution. 59: 133-141. PMID 15383916 DOI: 10.1007/S00239-003-2572-9  0.57
2004 Hall BG, Barlow M. Evolution of the serine beta-lactamases: past, present and future. Drug Resistance Updates : Reviews and Commentaries in Antimicrobial and Anticancer Chemotherapy. 7: 111-23. PMID 15158767 DOI: 10.1016/J.Drup.2004.02.003  0.612
2004 Hall BG. Predicting the evolution of antibiotic resistance genes. Nature Reviews. Microbiology. 2: 430-5. PMID 15100696 DOI: 10.1038/Nrmicro888  0.347
2004 Hall BG. In vitro evolution predicts that the IMP-1 metallo-beta-lactamase does not have the potential to evolve increased activity against imipenem. Antimicrobial Agents and Chemotherapy. 48: 1032-3. PMID 14982802 DOI: 10.1128/Aac.48.3.1032-1033.2004  0.401
2003 Salipante SJ, Barlow M, Hall BG. GeneHunter, a Transposon Tool for Identification and Isolation of Cryptic Antibiotic Resistance Genes Antimicrobial Agents and Chemotherapy. 47: 3840-3845. PMID 14638492 DOI: 10.1128/Aac.47.12.3840-3845.2003  0.615
2003 Hall BG, Barlow M. Structure-based phylogenies of the serine beta-lactamases. Journal of Molecular Evolution. 57: 255-60. PMID 14629035 DOI: 10.1007/S00239-003-2473-Y  0.599
2003 Hall BG, Salipante SJ, Barlow M. The metallo-β-lactamases fall into two distinct phylogenetic groups Journal of Molecular Evolution. 57: 249-254. PMID 14629034 DOI: 10.1007/S00239-003-2471-0  0.597
2003 Barlow M, Hall BG. Experimental prediction of the evolution of cefepime resistance from the CMY-2 AmpC beta-lactamase. Genetics. 164: 23-9. PMID 12750318  0.599
2003 Barlow M, Hall BG. Experimental prediction of the natural evolution of antibiotic resistance. Genetics. 163: 1237-41. PMID 12702671  0.575
2003 Salipante SJ, Hall BG. Determining the limits of the evolutionary potential of an antibiotic resistance gene Molecular Biology and Evolution. 20: 653-659. PMID 12679553 DOI: 10.1093/Molbev/Msg074  0.374
2003 Hall BG. The EBG System of E. coli: Origin and Evolution of a Novel β-Galactosidase for the Metabolism of Lactose Genetica. 118: 143-156. DOI: 10.1007/978-94-010-0229-5_5  0.319
2002 Barlow M, Hall BG. Phylogenetic analysis shows that the OXA beta-lactamase genes have been on plasmids for millions of years. Journal of Molecular Evolution. 55: 314-21. PMID 12187384 DOI: 10.1007/S00239-002-2328-Y  0.622
2002 Hall BG. Predicting evolution by in vitro evolution requires determining evolutionary pathways. Antimicrobial Agents and Chemotherapy. 46: 3035-8. PMID 12183265 DOI: 10.1128/Aac.46.9.3035-3038.2002  0.356
2002 Barlow M, Hall BG. Origin and evolution of the AmpC beta-lactamases of Citrobacter freundii. Antimicrobial Agents and Chemotherapy. 46: 1190-8. PMID 11959544 DOI: 10.1128/Aac.46.5.1190-1198.2002  0.626
2002 Barlow M, Hall BG. Predicting evolutionary potential: in vitro evolution accurately reproduces natural evolution of the tem beta-lactamase. Genetics. 160: 823-32. PMID 11901104  0.589
2001 Hall BG. Predicting evolutionary potential. I. Predicting the evolution of a Lactose-PTS system in Escherichia coli Molecular Biology and Evolution. 18: 1389-1400. PMID 11420377 DOI: 10.1093/Oxfordjournals.Molbev.A003923  0.316
1999 Hall BG. Experimental evolution of Ebg enzyme provides clues about the evolution of catalysis and to evolutionary potential Fems Microbiology Letters. 174: 1-8. PMID 10234816 DOI: 10.1111/J.1574-6968.1999.Tb13542.X  0.322
1999 Hall BG. Toward an understanding of evolutionary potential Fems Microbiology Letters. 178: 1-6. DOI: 10.1111/J.1574-6968.1999.Tb13751.X  0.326
1998 Raychaudhuri S, Conrad J, Hall BG, Ofengand J. A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli Rna. 4: 1407-1417. PMID 9814761 DOI: 10.1017/S1355838298981146  0.312
1998 Hall BG, Malik HS. Determining the evolutionary potential of a gene. Molecular Biology and Evolution. 15: 1055-61. PMID 9718732 DOI: 10.1093/Oxfordjournals.Molbev.A026004  0.416
1998 Hall BG. Adaptive mutagenesis at ebgR is regulated by phoPQ Journal of Bacteriology. 180: 2862-2865. PMID 9603873 DOI: 10.1128/Jb.180.11.2862-2865.1998  0.326
1998 Hall BG. Activation of the bgl operon by adaptive mutation Molecular Biology and Evolution. 15: 1-5. PMID 9491599 DOI: 10.1093/Oxfordjournals.Molbev.A025842  0.325
1997 Riesenfeld C, Everett M, Piddock LJV, Hall BG. Adaptive mutations produce resistance to ciprofloxacin Antimicrobial Agents and Chemotherapy. 41: 2059-2060. PMID 9303418 DOI: 10.1128/Aac.41.9.2059  0.328
1997 Calugaru SV, Krishnan S, Chany CJ, Hall BG, Sinnott ML. Larger increases in sensitivity to paracatalytic inactivation than in catalytic competence during experimental evolution of the second beta-galactosidase of Escherichia coli. The Biochemical Journal. 325: 117-21. PMID 9224636 DOI: 10.1042/Bj3250117  0.368
1997 Hall BG. The rtn gene of Proteus vulgaris is actually from Escherichia coli Journal of Bacteriology. 179: 2433-2434. PMID 9079933 DOI: 10.1128/Jb.179.7.2433-2434.1997  0.335
1995 Krishnan S, Hall BG, Sinnott ML. Catalytic consequences of experimental evolution: catalysis by a 'third-generation' evolvant of the second beta-galactosidase of Escherichia coli, ebgabcde, and by ebgabcd, a 'second-generation' evolvant containing two supposedly 'kinetically silent' mutations. The Biochemical Journal. 312: 971-7. PMID 8554546 DOI: 10.1042/Bj3120971  0.329
1995 Hall BG. Adaptive mutations in Escherichia coli as a model for the multiple mutational origins of tumors Proceedings of the National Academy of Sciences of the United States of America. 92: 5669-5673. PMID 7777567 DOI: 10.1073/Pnas.92.12.5669  0.306
1995 Hall BG. Genetics of selection-induced mutations: I. uvrA, uvrB, uvrC, and uvrD are selection-induced specific mutator loci Journal of Molecular Evolution. 40: 86-93. PMID 7714915 DOI: 10.1007/Bf00166599  0.302
1995 Calugaru SV, Hall BG, Sinnott ML. Catalysis by the large subunit of the second beta-galactosidase of Escherichia coli in the absence of the small subunit. The Biochemical Journal. 312: 281-6. PMID 7492325 DOI: 10.1042/Bj3120281  0.342
1994 Hall BG. On alternatives to selection-induced mutation in the bgl operon of Escherichia coli Molecular Biology and Evolution. 11: 159-168. PMID 8170359 DOI: 10.1093/Oxfordjournals.Molbev.A040100  0.305
1994 Hall BG. Selection or mutation: Which, if either, comes first? Fems Microbiology Letters. 117: 237-242. DOI: 10.1111/J.1574-6968.1994.Tb06773.X  0.311
1993 Srinivasan K, Konstantinidis A, Sinnott ML, Hall BG. Large changes of transition-state structure during experimental evolution of an enzyme. The Biochemical Journal. 291: 15-7. PMID 8471034 DOI: 10.1042/Bj2910015  0.309
1993 Hall BG. The role of single-mutant intermediates in the generation of trpAB double revertants during prolonged selection Journal of Bacteriology. 175: 6411-6414. PMID 8407817 DOI: 10.1128/Jb.175.20.6411-6414.1993  0.304
1993 Hall BG, Hauer B. Acquisition of new metabolic activities by microbial populations Methods in Enzymology. 224: 603-613. PMID 8264414 DOI: 10.1016/0076-6879(93)24045-V  0.341
1992 Hall BG, Xu L. Nucleotide sequence, function, activation, and evolution of the cryptic asc operon of Escherichia coli K12 Molecular Biology and Evolution. 9: 688-706. PMID 1630307 DOI: 10.1093/Oxfordjournals.Molbev.A040753  0.372
1992 Hall BG, Sharp PM. Molecular population genetics of Escherichia coli: DNA sequence diversity at the celC, crr, and gutB loci of natural isolates Molecular Biology and Evolution. 9: 654-665. PMID 1630305 DOI: 10.1093/Oxfordjournals.Molbev.A040751  0.381
1992 Hall BG. Selection-induced mutations occur in yeast Proceedings of the National Academy of Sciences of the United States of America. 89: 4300-4303. PMID 1584764 DOI: 10.1073/Pnas.89.10.4300  0.306
1992 Elliott AC, K S, Sinnott ML, Smith PJ, Bommuswamy J, Guo Z, Hall BG, Zhang Y. The catalytic consequences of experimental evolution. Studies on the subunit structure of the second (ebg) beta-galactosidase of Escherichia coli, and on catalysis by ebgab, an experimental evolvant containing two amino acid substitutions. The Biochemical Journal. 282: 155-64. PMID 1540130 DOI: 10.1042/Bj2820155  0.385
1991 Hall BG. Adaptive evolution that requires multiple spontaneous mutations: Mutations involving base substitutions Proceedings of the National Academy of Sciences of the United States of America. 88: 5882-5886. PMID 2062865 DOI: 10.1073/Pnas.88.13.5882  0.304
1990 Parker LL, Hall BG. Characterization and nucleotide sequence of the cryptic cel operon of Escherichia coli K12. Genetics. 124: 455-71. PMID 2179047  0.3
1989 Hall BG. Selection, adaptation, and bacterial operons Genome / National Research Council Canada = Genome / Conseil National De Recherches Canada. 31: 265-271. PMID 2687097 DOI: 10.1139/G89-044  0.349
1988 Hall BG. Widespread distribution of deletions of the bgl operon in natural isolates of Escherichia coli Molecular Biology and Evolution. 5: 456-467. PMID 3043141 DOI: 10.1093/Oxfordjournals.Molbev.A040499  0.332
1988 Parker LL, Hall BG. A fourth Escherichia coli gene system with the potential to evolve beta-glucoside utilization. Genetics. 119: 485-90. PMID 3042507  0.307
1988 Parker LL, Betts PW, Hall BG. Activation of a cryptic gene by excision of a DNA fragment. Journal of Bacteriology. 170: 218-22. PMID 2826393 DOI: 10.1128/Jb.170.1.218-222.1988  0.363
1986 Hall BG, Betts PW, Kricker M. Maintenance of the cellobiose utilization genes of Escherichia coli in a cryptic state Molecular Biology and Evolution. 3: 389-402. PMID 2832693 DOI: 10.1093/Oxfordjournals.Molbev.A040406  0.359
1985 Stokes HW, Hall BG. Sequence of the ebgR gene of Escherichia coli: Evidence that the EBG and LAC operons are descended from a common ancestor Molecular Biology and Evolution. 2: 478-483. PMID 3939708 DOI: 10.1093/Oxfordjournals.Molbev.A040373  0.35
1985 Stokes HW, Betts PW, Hall BG. Sequence of the ebgA gene of Escherichia coli: Comparison with the lacZ gene Molecular Biology and Evolution. 2: 469-477. PMID 3939707 DOI: 10.1093/Oxfordjournals.Molbev.A040372  0.363
1984 Kricker M, Hall BG. Directed evolution of cellobiose utilization in Escherichia coli K12 Molecular Biology and Evolution. 1: 171-182. PMID 6400650 DOI: 10.1093/Oxfordjournals.Molbev.A040310  0.342
1983 Hall BG, Yokoyama S, Calhoun DH. Role of cryptic genes in microbial evolution Molecular Biology and Evolution. 1: 109-124. PMID 6400646 DOI: 10.1093/Oxfordjournals.Molbev.A040300  0.348
1982 Hall BG, Imai k, Romano CP. Genetics of the lac-PTS system of Klebsiella Genetical Research. 39: 287-302. PMID 7117837 DOI: 10.1017/S0016672300020966  0.322
1981 Baumann P, Baumann L, Hall BG. Lactose utilization by Vibrio vulnificus Current Microbiology. 6: 131-135. DOI: 10.1007/Bf01642385  0.303
1980 Hall BG, Zuzel T. Evolution of a new enzymatic function by recombination within a gene Proceedings of the National Academy of Sciences of the United States of America. 77: 3529-3533. PMID 6774339 DOI: 10.1073/Pnas.77.6.3529  0.346
1973 Hall BG. In vivo complementation between wild-type and mutant -galactosidase in Escherichia coli Journal of Bacteriology. 114: 448-450. PMID 4572723 DOI: 10.1128/Jb.114.1.448-450.1973  0.313
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