Zachary A. Lewis, Ph.D. - Publications

Affiliations: 
2004 Texas A & M University, College Station, TX, United States 
Area:
Microbiology Biology, Molecular Biology, Genetics

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J. KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. Plos Genetics. 12: e1006222. PMID 27548260 DOI: 10.1371/Journal.Pgen.1006222  0.64
2016 Seymour M, Ji L, Santos AM, Kamei M, Sasaki T, Basenko EY, Schmitz RJ, Zhang X, Lewis ZA. Histone H1 Limits DNA Methylation in Neurospora crassa. G3 (Bethesda, Md.). PMID 27172195 DOI: 10.1534/G3.116.028324  0.64
2016 Basenko EY, Kamei M, Ji L, Schmitz RJ, Lewis ZA. The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa. Plos Genetics. 12: e1005790. PMID 26771905 DOI: 10.1371/Journal.Pgen.1005790  0.64
2015 Basenko EY, Sasaki T, Ji L, Prybol CJ, Burckhardt RM, Schmitz RJ, Lewis ZA. Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth. Proceedings of the National Academy of Sciences of the United States of America. 112: E6339-E6348. PMID 26578794 DOI: 10.1073/Pnas.1511377112  0.64
2014 Ji L, Sasaki T, Sun X, Ma P, Lewis ZA, Schmitz RJ. Methylated DNA is over-represented in whole-genome bisulfite sequencing data. Frontiers in Genetics. 5: 341. PMID 25374580 DOI: 10.3389/Fgene.2014.00341  0.64
2014 Sasaki T, Lynch KL, Mueller CV, Friedman S, Freitag M, Lewis ZA. Heterochromatin controls γH2A localization in Neurospora crassa. Eukaryotic Cell. 13: 990-1000. PMID 24879124 DOI: 10.1128/Ec.00117-14  0.64
2013 Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU. Regional control of histone H3 lysine 27 methylation in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 110: 6027-32. PMID 23530226 DOI: 10.1073/Pnas.1303750110  0.64
2012 Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU. Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation. Nature Structural & Molecular Biology. 19: 471-7, S1. PMID 22504884 DOI: 10.1038/Nsmb.2274  0.64
2011 Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC. CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency. Plos Genetics. 7: e1002166. PMID 21811413 DOI: 10.1371/Journal.Pgen.1002166  0.64
2010 Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R, Selker EU. DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. Plos Genetics. 6: e1001196. PMID 21079689 DOI: 10.1371/Journal.Pgen.1001196  0.64
2010 Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC, Liu Y. Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi. Molecular Cell. 38: 803-14. PMID 20417140 DOI: 10.1016/J.Molcel.2010.04.005  0.64
2010 Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Selker EU. Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin. Proceedings of the National Academy of Sciences of the United States of America. 107: 8310-5. PMID 20404183 DOI: 10.1073/Pnas.1000328107  0.64
2010 Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes & Development. 24: 443-54. PMID 20139222 DOI: 10.1101/Gad.1893210  0.64
2009 Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schübeler D, Selker EU. Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Research. 19: 427-37. PMID 19092133 DOI: 10.1101/Gr.086231.108  0.64
2008 Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA. Rapid SNP discovery and genetic mapping using sequenced RAD markers. Plos One. 3: e3376. PMID 18852878 DOI: 10.1371/Journal.Pone.0003376  0.64
2007 Lewis ZA, Shiver AL, Stiffler N, Miller MR, Johnson EA, Selker EU. High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora. Genetics. 177: 1163-71. PMID 17660537 DOI: 10.1534/Genetics.107.078147  0.64
2006 de Paula RM, Lewis ZA, Greene AV, Seo KS, Morgan LW, Vitalini MW, Bennett L, Gomer RH, Bell-Pedersen D. Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes. Journal of Biological Rhythms. 21: 159-68. PMID 16731655 DOI: 10.1177/0748730406288338  0.64
2004 Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, Ebbole DJ. Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 41: 1104-19. PMID 15531214 DOI: 10.1016/J.Fgb.2004.08.009  0.64
2003 Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D. Multiple oscillators regulate circadian gene expression in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 100: 13597-602. PMID 14597725 DOI: 10.1073/Pnas.2233734100  0.64
2003 Correa A, Greene AV, Lewis ZA, Bell-Pedersen D. Molecular genetics of circadian rhythms in neurospora crassa Applied Mycology and Biotechnology. 3: 43-63. DOI: 10.1016/S1874-5334(03)80006-0  0.64
2002 Lewis ZA, Correa A, Schwerdtfeger C, Link KL, Xie X, Gomer RH, Thomas T, Ebbole DJ, Bell-Pedersen D. Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa. Molecular Microbiology. 45: 917-31. PMID 12180913 DOI: 10.1046/J.1365-2958.2002.03074.X  0.64
2001 Bell-Pedersen D, Lewis ZA, Loros JJ, Dunlap JC. The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg-2) gene. Molecular Microbiology. 41: 897-909. PMID 11532152 DOI: 10.1046/J.1365-2958.2001.02558.X  0.64
2001 Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ. vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genetics and Biology : Fg & B. 32: 169-81. PMID 11343403 DOI: 10.1006/Fgbi.2001.1264  0.64
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