Murat Kasap, Ph.D. - Related publications

Affiliations: 
2002 Virginia Polytechnic and State University, United States 
Area:
Microbiology Biology, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Wright Muelas M, Mughal F, O'Hagan S, Day PJ, Kell DB. The role and robustness of the Gini coefficient as an unbiased tool for the selection of Gini genes for normalising expression profiling data. Scientific Reports. 9: 17960. PMID 31784565 DOI: 10.1038/s41598-019-54288-7   
2019 Guo J, Ren Y, Tang Z, Shi W, Zhou M. Characterization and expression profiling of the genes in wheat. Peerj. 7: e8190. PMID 31803544 DOI: 10.7717/peerj.8190   
2019 Yang Y, Ahammed GJ, Wan C, Liu H, Chen R, Zhou Y. Comprehensive Analysis of TIFY Transcription Factors and Their Expression Profiles under Jasmonic Acid and Abiotic Stresses in Watermelon. International Journal of Genomics. 2019: 6813086. PMID 31662958 DOI: 10.1155/2019/6813086   
2019 Makrodimitris S, Reinders MJT, van Ham RCHJ. Metric Learning on Expression Data for Gene Function Prediction. Bioinformatics (Oxford, England). PMID 31562759 DOI: 10.1093/bioinformatics/btz731   
2019 Bean LJH, Funke B, Carlston CM, Gannon JL, Kantarci S, Krock BL, Zhang S, Bayrak-Toydemir P, . Diagnostic gene sequencing panels: from design to report-a technical standard of the American College of Medical Genetics and Genomics (ACMG). Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 31732716 DOI: 10.1038/s41436-019-0666-z   
2019 Wu SY, Tong XL, Li CL, Ding X, Zhang ZL, Fang CY, Tan D, Hu H, Liu H, Dai FY. gene encoding a C2H2 zinc finger protein is required for wing development in the silkworm . International Journal of Biological Sciences. 15: 2664-2675. PMID 31754338 DOI: 10.7150/ijbs.34743   
2019 Liu X, Liu Z, Niu X, Xu Q, Yang L. Genome-Wide Identification and Analysis of the -Like Gene Family in Bread Wheat and Its Relatives. International Journal of Molecular Sciences. 20. PMID 31783558 DOI: 10.3390/ijms20235974   
2019 Jones DAB, John E, Rybak K, Phan HTT, Singh KB, Lin SY, Solomon PS, Oliver RP, Tan KC. A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat. Scientific Reports. 9: 15884. PMID 31685928 DOI: 10.1038/s41598-019-52444-7   
2019 Yuan F, Li K, Zhou C, Zhou H, Liu H, Chai H, Lu F, Zhang H. Identification of two novel highly inducible promoters from Bacillus licheniformis by screening transcriptomic data. Genomics. PMID 31678595 DOI: 10.1016/j.ygeno.2019.10.021   
2019 Wu X, Zhou X, Ding X, Chu M, Liang C, Pei J, Xiong L, Bao P, Guo X, Yan P. The Selection of Reference Genes for Quantitative Real-Time PCR in the Ashidan Yak Mammary Gland During Lactation and Dry Period. Animals : An Open Access Journal From Mdpi. 9. PMID 31717620 DOI: 10.3390/ani9110943   
2019 Gu Y, Chen G, Du Y. Screening of Prognosis-Related Genes in Primary Breast Carcinoma Using Genomic Expression Data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 31718274 DOI: 10.1089/cmb.2019.0131   
2019 Yao Q, Song Z, Wang B, Qin Q, Zhang JA. Identifying Key Genes and Functionally Enriched Pathways in Sjögren's Syndrome by Weighted Gene Co-Expression Network Analysis. Frontiers in Genetics. 10: 1142. PMID 31798636 DOI: 10.3389/fgene.2019.01142   
2019 Kang C, Sun F, Yan L, Li R, Bai J, Caetano-Anollés G. Genome-Wide Identification and Characterization of the Vacuolar H-ATPase Subunit H Gene Family in Crop Plants. International Journal of Molecular Sciences. 20. PMID 31623139 DOI: 10.3390/ijms20205125   
2019 Ogawa T, Oda-Ueda N, Hisata K, Nakamura H, Chijiwa T, Hattori S, Isomoto A, Yugeta H, Yamasaki S, Fukumaki Y, Ohno M, Satoh N, Shibata H. Alternative mRNA Splicing in Three Venom Families Underlying a Possible Production of Divergent Venom Proteins of the Habu Snake, . Toxins. 11. PMID 31600994 DOI: 10.3390/toxins11100581   
2019 Guo X, Li F, Bai L, Yu W, Zhang X, Zhu Y, Yang D. Gene Circuit Compartment on Nano-interface Facilitates Cascade Gene Expression. Journal of the American Chemical Society. PMID 31721571 DOI: 10.1021/jacs.9b11407   
2019 Gorji AE, Sadeghi B, Roudbari Z, Javadmanesh A, Sadkowski T. Transcriptomic analysis on the promoter regions discover gene networks involving mastitis in cattle. Microbial Pathogenesis. 103801. PMID 31618669 DOI: 10.1016/j.micpath.2019.103801   
2019 Li X, Yang Y, Ahmad S, Sun M, Yuan C, Zheng T, Han Y, Cheng T, Wang J, Zhang Q. Selection of optimal reference genes for qRT-PCR analysis of shoot development and graviresponse in prostrate and erect chrysanthemums. Plos One. 14: e0225241. PMID 31774840 DOI: 10.1371/journal.pone.0225241   
2019 Poehlman WL, Schnabel EL, Chavan SA, Frugoli JA, Feltus FA. Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis. Frontiers in Plant Science. 10: 1409. PMID 31737022 DOI: 10.3389/fpls.2019.01409   
2019 Gan Z, Fei L, Shan N, Fu Y, Chen J. Identification and Expression Analysis of in Kiwifruit () During Postharvest Process. Plants (Basel, Switzerland). 8. PMID 31698719 DOI: 10.3390/plants8110473   
2019 Dai Z. Gene Repositioning Is Under Constraints After Evolutionary Conserved Gene Neighborhood Separate. Frontiers in Genetics. 10: 1030. PMID 31632448 DOI: 10.3389/fgene.2019.01030   
2019 Liang C, Li A, Raza SHA, Khan R, Wang X, Wang S, Wang G, Zhang Y, Zan L. The Molecular Characteristics of the Gene and the Role of Transcription Factors and in Its Core Promoter Region. Genes. 10. PMID 31795267 DOI: 10.3390/genes10120981   
2019 Hu H, Ye X, Wang H, Ji R. Selection of Reference Genes for Normalization of Real-Time PCR Data in Calliptamus italicus (Orthoptera: Acrididae) Under Different Temperature Conditions. Journal of Insect Science (Online). 19. PMID 31752021 DOI: 10.1093/jisesa/iez104   
2019 Satterlee T, Entwistle S, Yin Y, Cary JW, Lebar M, Losada L, Calvo AM. Dependent Transcriptome and Its Role in Secondary Metabolism, Environmental Stress, and Virulence in . G3 (Bethesda, Md.). PMID 31601618 DOI: 10.1534/g3.119.400777   
2019 Wiejak J, van Basten B, Hamilton G, Yarwood SJ. Genome-Wide Mapping Defines a Role for C/EBPβ and c-Jun in Non-Canonical Cyclic AMP Signalling. Cells. 8. PMID 31615122 DOI: 10.3390/cells8101253   
2019 Wang J, Zhao H, Dong H, Zhu L, Wang S, Wang P, Ren Q, Zhu H, Chen J, Lin Z, Cheng Y, Qian B, Zhang Y, Jia R, Wu W, et al. LAT, HOXD3 and NFE2L3 identified as novel DNA methylation-driven genes and prognostic markers in human clear cell renal cell carcinoma by integrative bioinformatics approaches. Journal of Cancer. 10: 6726-6737. PMID 31777602 DOI: 10.7150/jca.35641   
2019 Young AP, Landry CF, Jackson DJ, Wyeth RC. Tissue-specific evaluation of suitable reference genes for RT-qPCR in the pond snail, . Peerj. 7: e7888. PMID 31637135 DOI: 10.7717/peerj.7888   
2019 Ramisch A, Heinrich V, Glaser LV, Fuchs A, Yang X, Benner P, Schöpflin R, Li N, Kinkley S, Römer-Hillmann A, Longinotto J, Heyne S, Czepukojc B, Kessler SM, Kiemer AK, et al. CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome Biology. 20: 227. PMID 31699133 DOI: 10.1186/s13059-019-1860-7   
2019 Yi Y, Liu Y, Wu K, Wu W, Zhang W. The core genes involved in the promotion of depression in patients with ovarian cancer. Oncology Letters. 18: 5995-6007. PMID 31788074 DOI: 10.3892/ol.2019.10934   
2019 Hu D, Xie Q, Liu Q, Zuo T, Zhang H, Zhang Y, Lian X, Zhu L. Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in L. Genes. 10. PMID 31810369 DOI: 10.3390/genes10121000   
2019 Xing Z, Luo Z, Yang H, Huang Z, Liang X. Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis. Oncology Letters. 18: 4667-4676. PMID 31611976 DOI: 10.3892/ol.2019.10817   
2019 Liu Q, Xing Y, Li Y, Wang H, Mi T, Zhen Y, Yu Z. Carbon fixation gene expression in Skeletonema marinoi in nitrogen-, phosphate-, silicate-starvation and low temperature stress exposure. Journal of Phycology. PMID 31628865 DOI: 10.1111/jpy.12936   
2019 Xue K, Yang J, Zhao Y, Cheng J, Wang Z. Identification of Susceptibility Genes to Allergic Rhinitis by Gene Expression Data Sets. Clinical and Translational Science. PMID 31794148 DOI: 10.1111/cts.12698   
2019 Luo X, Xu S, Zhong Y, Tu T, Xu Y, Li X, Wang B, Yang F. High gene expression levels of VEGFA and CXCL8 in the peritumoral brain zone are associated with the recurrence of glioblastoma: A bioinformatics analysis. Oncology Letters. 18: 6171-6179. PMID 31788092 DOI: 10.3892/ol.2019.10988   
2019 Chen Z, Lin Y, Gao J, Lin S, Zheng Y, Liu Y, Chen SQ. Identification of key candidate genes for colorectal cancer by bioinformatics analysis. Oncology Letters. 18: 6583-6593. PMID 31788116 DOI: 10.3892/ol.2019.10996   
2019 Pallegar P, Peña-Castillo L, Langille E, Gomelsky M, Lang AS. Cyclic-di-GMP-mediated regulation of gene transfer and motility in . Journal of Bacteriology. PMID 31659012 DOI: 10.1128/JB.00554-19   
2019 Chen TY, Liu Y, Chen L, Luo J, Zhang C, Shen XF. Identification of the Potential Biomarkers in Patients with Glioma: A Weighted Gene Co-Expression Network Analysis. Carcinogenesis. PMID 31761927 DOI: 10.1093/carcin/bgz194   
2019 Li L, Wang K, Zhao M, Li S, Jiang Y, Zhu L, Chen J, Wang Y, Sun C, Chen P, Lei J, Zhang M, Wang Y. Selection and validation of reference genes desirable for gene expression analysis by qRT-PCR in MeJA-treated ginseng hairy roots. Plos One. 14: e0226168. PMID 31805178 DOI: 10.1371/journal.pone.0226168   
2019 Wang X, Wang S, Song T. A Spectral Rotation Method with Triplet Periodicity Property for Planted Motif Finding Problems. Combinatorial Chemistry & High Throughput Screening. PMID 31782356 DOI: 10.2174/1386207322666191129112433   
2019 Zhang JZ, Wu ZH, Cheng Q. Screening and identification of key biomarkers in nasopharyngeal carcinoma: Evidence from bioinformatic analysis. Medicine. 98: e17997. PMID 31770211 DOI: 10.1097/MD.0000000000017997   
2019 Soufan O, Ewald J, Viau C, Crump D, Hecker M, Basu N, Xia J. T1000: a reduced gene set prioritized for toxicogenomic studies. Peerj. 7: e7975. PMID 31681519 DOI: 10.7717/peerj.7975   
2019 Li S, Hou J, Xu W. Screening and identification of key biomarkers in prostate cancer using bioinformatics. Molecular Medicine Reports. PMID 31746380 DOI: 10.3892/mmr.2019.10799   
2019 Ge L, Dou Y, Li M, Qu P, He Z, Liu Y, Xu Z, Chen J, Chen M, Ma Y. SiMYB3 in Foxtail Millet () Confers Tolerance to Low-Nitrogen Stress by Regulating Root Growth in Transgenic Plants. International Journal of Molecular Sciences. 20. PMID 31731735 DOI: 10.3390/ijms20225741   
2019 Wang B, Chai H, Zhong Y, Shen Y, Yang W, Chen J, Xin Z, Shi H. The DEAD-box RNA Helicase SHI2 Functions in Repression of Salt-inducible Genes and Regulation of Cold-inducible Gene Splicing. Journal of Experimental Botany. PMID 31745559 DOI: 10.1093/jxb/erz523   
2019 Parvandeh S, McKinney BA. EpistasisRank and EpistasisKatz: interaction network centrality methods that integrate prior knowledge networks. Bioinformatics (Oxford, England). 35: 2329-2331. PMID 30481259 DOI: 10.1093/bioinformatics/bty965   
2019 Alam A, Imam N, Ahmed MM, Tazyeen S, Tamkeen N, Farooqui A, Malik MZ, Ishrat R. Identification and Classification of Differentially Expressed Genes and Network Meta-Analysis Reveals Potential Molecular Signatures Associated With Tuberculosis. Frontiers in Genetics. 10: 932. PMID 31749827 DOI: 10.3389/fgene.2019.00932   
2019 Muriuki C, Bush SJ, Salavati M, McCulloch MEB, Lisowski ZM, Agaba M, Djikeng A, Hume DA, Clark EL. A Mini-Atlas of Gene Expression for the Domestic Goat (). Frontiers in Genetics. 10: 1080. PMID 31749840 DOI: 10.3389/fgene.2019.01080   
2019 Lin G, Yin G, Yan Y, Lin B. Identification of prognostic biomarkers for malignant melanoma using microarray datasets. Oncology Letters. 18: 5243-5254. PMID 31620197 DOI: 10.3892/ol.2019.10914   
2019 Liu G, Olsen JE, Thomsen LE. Identification of Genes Essential for Antibiotic-Induced Up-Regulation of Plasmid-Transfer-Genes in Cephalosporin Resistant . Frontiers in Microbiology. 10: 2203. PMID 31616400 DOI: 10.3389/fmicb.2019.02203   
2019 Gamble J, Chick J, Seltzer K, Graber J, Gygi S, Braun R, Snyder E. An expanded mouse testis transcriptome and mass spectrometry defines novel proteins. Reproduction (Cambridge, England). PMID 31677600 DOI: 10.1530/REP-19-0092   
2019 Chen Z, Yuan W, Liu T, Huang D, Xiang L. Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus. Experimental and Therapeutic Medicine. 18: 4303-4312. PMID 31772629 DOI: 10.3892/etm.2019.8092