Robert K Jansen, Ph.D. - Publications

Affiliations: 
1991- Department of Integrative Biology University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Plant Systematics and Evolution, Comparative Genomics, Plastid genome evolution
Website:
https://integrativebio.utexas.edu/component/cobalt/item/7-integrative-biology/216-jansen-robert-k?Itemid=1224

221 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zwonitzer KD, Tressel LG, Wu Z, Kan S, Broz AK, Mower JP, Ruhlman TA, Jansen RK, Sloan DB, Havird JC. Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America. 121: e2317240121. PMID 38427600 DOI: 10.1073/pnas.2317240121  0.71
2024 Farmer TA, Jansen RK. Out of Place: Phylogenomics resolves the placement of Eurasian taxa and sheds light on origin of Thermopsideae in North America. Molecular Phylogenetics and Evolution. 193: 108024. PMID 38341005 DOI: 10.1016/j.ympev.2024.108024  0.363
2023 Zhou W, Armijos CE, Lee C, Lu R, Wang J, Ruhlman TA, Jansen RK, Jones AM, Jones CD. Plastid Genome Assembly Using Long-read Data (ptGAUL). Molecular Ecology Resources. PMID 36939021 DOI: 10.1111/1755-0998.13787  0.722
2023 Lee C, Ruhlman TA, Jansen RK. Rate accelerations in plastid and mitochondrial genomes of Cyperaceae occur in the same clades. Molecular Phylogenetics and Evolution. 182: 107760. PMID 36921696 DOI: 10.1016/j.ympev.2023.107760  0.774
2022 Choi IS, Wojciechowski MF, Steele KP, Hopkins A, Ruhlman TA, Jansen RK. Plastid phylogenomics uncovers multiple species in Medicago truncatula (Fabaceae) germplasm accessions. Scientific Reports. 12: 21172. PMID 36477422 DOI: 10.1038/s41598-022-25381-1  0.73
2022 Nefissi Ouertani R, Arasappan D, Ruhlman TA, Ben Chikha M, Abid G, Mejri S, Ghorbel A, Jansen RK. Effects of Salt Stress on Transcriptional and Physiological Responses in Barley Leaves with Contrasting Salt Tolerance. International Journal of Molecular Sciences. 23. PMID 35563398 DOI: 10.3390/ijms23095006  0.651
2022 Choi IS, Cardoso D, de Queiroz LP, de Lima HC, Lee C, Ruhlman TA, Jansen RK, Wojciechowski MF. Highly Resolved Papilionoid Legume Phylogeny Based on Plastid Phylogenomics. Frontiers in Plant Science. 13: 823190. PMID 35283880 DOI: 10.3389/fpls.2022.823190  0.778
2022 Choi IS, Wojciechowski MF, Steele KP, Hunter SG, Ruhlman TA, Jansen RK. Born in the mitochondrion and raised in the nucleus: evolution of a novel tandem repeat family in Medicago polymorpha (Fabaceae). The Plant Journal : For Cell and Molecular Biology. PMID 35061308 DOI: 10.1111/tpj.15676  0.785
2021 Nefissi Ouertani R, Arasappan D, Abid G, Ben Chikha M, Jardak R, Mahmoudi H, Mejri S, Ghorbel A, Ruhlman TA, Jansen RK. Transcriptomic Analysis of Salt-Stress-Responsive Genes in Barley Roots and Leaves. International Journal of Molecular Sciences. 22. PMID 34360920 DOI: 10.3390/ijms22158155  0.661
2021 Choi IS, Wojciechowski MF, Ruhlman TA, Jansen RK. In and out: Evolution of viral sequences in the mitochondrial genomes of legumes (Fabaceae). Molecular Phylogenetics and Evolution. 107236. PMID 34147655 DOI: 10.1016/j.ympev.2021.107236  0.719
2021 Ruhlman TA, Jansen RK. Plastid Genomes of Flowering Plants: Essential Principles. Methods in Molecular Biology (Clifton, N.J.). 2317: 3-47. PMID 34028761 DOI: 10.1007/978-1-0716-1472-3_1  0.731
2021 Lee C, Choi IS, Cardoso D, de Lima HC, de Queiroz LP, Wojciechowski MF, Jansen RK, Ruhlman TA. The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes. The Plant Journal : For Cell and Molecular Biology. PMID 34021942 DOI: 10.1111/tpj.15351  0.772
2021 Alqahtani AA, Jansen RK. The evolutionary fate of rpl32 and rps16 losses in the Euphorbia schimperi (Euphorbiaceae) plastome. Scientific Reports. 11: 7466. PMID 33811236 DOI: 10.1038/s41598-021-86820-z  0.408
2021 Shrestha B, Gilbert LE, Ruhlman TA, Jansen RK. Clade-Specific Plastid Inheritance Patterns Including Frequent Biparental Inheritance in Interspecific Crosses. International Journal of Molecular Sciences. 22. PMID 33668897 DOI: 10.3390/ijms22052278  0.684
2020 Choi IS, Jansen R, Ruhlman T. Caught in the Act: Variation in plastid genome inverted repeat expansion within and between populations of . Ecology and Evolution. 10: 12129-12137. PMID 33209275 DOI: 10.1002/ece3.6839  0.735
2020 Su Choi K, Weng ML, Ruhlman TA, Jansen RK. Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium. Molecular Phylogenetics and Evolution. 106986. PMID 33059063 DOI: 10.1016/j.ympev.2020.106986  0.813
2020 Ren Y, Yu M, Low WY, Ruhlman TA, Hajrah NH, El Omri A, Alghamdi MK, Sabir MJ, Alhebshi AM, Kamli MR, Sabir JSM, Theriot EC, Jansen RK, Rather IA. Nucleotide substitution rates of diatom plastid encoded protein genes are positively correlated with genome architecture. Scientific Reports. 10: 14358. PMID 32873883 DOI: 10.1038/S41598-020-71473-1  0.779
2020 Gonçalves DJP, Shimizu GH, Ortiz EM, Jansen RK, Simpson BB. Historical biogeography of Vochysiaceae reveals an unexpected perspective of plant evolution in the Neotropics. American Journal of Botany. PMID 32643810 DOI: 10.1002/Ajb2.1502  0.624
2020 Gonçalves DJP, Jansen RK, Ruhlman TA, Mandel JR. Under the rug: Abandoning persistent misconceptions that obfuscate organelle evolution. Molecular Phylogenetics and Evolution. 151: 106903. PMID 32628998 DOI: 10.1016/J.Ympev.2020.106903  0.799
2020 Shrestha B, Gilbert LE, Ruhlman TA, Jansen RK. Rampant nuclear transfer and substitutions of plastid genes in Passiflora. Genome Biology and Evolution. PMID 32539116 DOI: 10.1093/Gbe/Evaa123  0.738
2020 Lee C, Ruhlman TA, Jansen RK. Unprecedented intraindividual structural heteroplasmy in Eleocharis (Cyperaceae, Poales) plastomes. Genome Biology and Evolution. PMID 32282915 DOI: 10.1093/Gbe/Evaa076  0.794
2020 Choi IS, Ruhlman TA, Jansen RK. Comparative Mitogenome Analysis of the Genus Reveals Independent Gene Fission of and Intracellular Gene Transfers in Fabaceae. International Journal of Molecular Sciences. 21. PMID 32183014 DOI: 10.3390/Ijms21061959  0.802
2019 Choi IS, Schwarz EN, Ruhlman TA, Khiyami MA, Sabir JSM, Hajarah NH, Sabir MJ, Rabah SO, Jansen RK. Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent. Bmc Plant Biology. 19: 448. PMID 31653201 DOI: 10.1186/S12870-019-2064-8  0.846
2019 Gonçalves DJP, Simpson BB, Shimizu GH, Jansen RK, Ortiz EM. Genome assembly and phylogenomic data analyses using plastid data: Contrasting species tree estimation methods. Data in Brief. 25: 104271. PMID 31453286 DOI: 10.1016/J.Dib.2019.104271  0.646
2019 Gonçalves DJP, Simpson BB, Ortiz EM, Shimizu GH, Jansen RK. Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes. Molecular Phylogenetics and Evolution. PMID 31146023 DOI: 10.1016/J.Ympev.2019.05.022  0.695
2019 Shrestha B, Weng ML, Theriot EC, Gilbert LE, Ruhlman TA, Krosnick SE, Jansen RK. Highly accelerated rates of genomic rearrangements and nucleotide substitutions in plastid genomes of Passiflora subgenus Decaloba. Molecular Phylogenetics and Evolution. PMID 31129347 DOI: 10.1016/J.Ympev.2019.05.030  0.847
2019 Choi IS, Jansen R, Ruhlman T. Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence. Genome Biology and Evolution. 11: 1321-1333. PMID 31046101 DOI: 10.1093/Gbe/Evz076  0.777
2019 van de Kerke SJ, Shrestha B, Ruhlman TA, Weng ML, Jansen RK, Jones CS, Schlichting CD, Hosseini S, Mohammadin S, Eric Schranz M, Bakker FT. Plastome based phylogenetics and younger crown node age in Pelargonium. Molecular Phylogenetics and Evolution. PMID 30926482 DOI: 10.1016/J.Ympev.2019.03.021  0.805
2018 Sabir JSM, Theriot EC, Manning SR, Al-Malki AL, Khiyami MA, Al-Ghamdi AK, Sabir MJ, Romanovicz DK, Hajrah NH, El Omri A, Jansen RK, Ashworth MP. Phylogenetic analysis and a review of the history of the accidental phytoplankter, Phaeodactylum tricornutum Bohlin (Bacillariophyta). Plos One. 13: e0196744. PMID 29883488 DOI: 10.1371/Journal.Pone.0196744  0.705
2018 SABIR JSM, THERIOT E, LOBBAN C, ALHEBSHI A, AL-MALKI A, HAJRAH N, KHIYAMI M, OBAID A, JANSEN R, ASHWORTH M. Systematics of araphid diatoms with asymmetric rimoportulae or densely packed virgae, with particular attention to Hyalosynedra (Ulnariaceae, Bacillariophyta) Phytotaxa. 347: 1. DOI: 10.11646/Phytotaxa.347.1.1  0.401
2018 Rabah SO, Shrestha B, Hajrah NH, Sabir MJ, Alharby HF, Sabir MJ, Alhebshi AM, Sabir JS, Gilbert LE, Ruhlman TA, Jansen RK. Passifloraplastome sequencing reveals widespread genomic rearrangements Journal of Systematics and Evolution. 57: 1-14. DOI: 10.1111/Jse.12425  0.776
2017 Rabah SO, Lee C, Hajrah NH, Makki RM, Alharby HF, Alhebshi AM, Sabir JSM, Jansen RK, Ruhlman TA. Plastome Sequencing of Ten Nonmodel Crop Species Uncovers a Large Insertion of Mitochondrial DNA in Cashew. The Plant Genome. 10. PMID 29293812 DOI: 10.3835/Plantgenome2017.03.0020  0.809
2017 Mutwakil MZ, Hajrah NH, Atef A, Edris S, Sabir MJ, Al-Ghamdi AK, Sabir MJSM, Nelson C, Makki RM, Ali HM, El-Domyati FM, Al-Hajar ASM, Gloaguen Y, Al-Zahrani HS, Sabir JSM, ... Jansen RK, et al. Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress. Bmc Plant Biology. 17: 231. PMID 29202709 DOI: 10.1186/S12870-017-1155-7  0.308
2017 Park S, Ruhlman TA, Weng ML, Hajrah NH, Sabir JSM, Jansen RK. Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium. Genome Biology and Evolution. 9: 1766-1780. PMID 28854633 DOI: 10.1093/Gbe/Evx124  0.853
2017 Hajrah NH, Obaid AY, Atef A, Ramadan AM, Arasappan D, Nelson CA, Edris S, Mutwakil MZ, Alhebshi A, Gadalla NO, Makki RM, Al-Kordy MA, El-Domyati FM, Sabir JSM, Khiyami MA, ... ... Jansen RK, et al. Transcriptomic analysis of salt stress responsive genes in Rhazya stricta. Plos One. 12: e0177589. PMID 28520766 DOI: 10.1371/Journal.Pone.0177589  0.329
2017 Ruhlman TA, Zhang J, Blazier JC, Sabir JS, Jansen RK. Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure. American Journal of Botany. PMID 28400415 DOI: 10.3732/Ajb.1600453  0.845
2017 Schwarz EN, Ruhlman TA, Weng ML, Khiyami MA, Sabir JS, Hajarah NH, Alharbi NS, Rabah SO, Jansen RK. Plastome-Wide Nucleotide Substitution Rates Reveal Accelerated Rates in Papilionoideae and Correlations with Genome Features Across Legume Subfamilies. Journal of Molecular Evolution. PMID 28397003 DOI: 10.1007/S00239-017-9792-X  0.813
2017 Gruenstaeudl M, Carstens BC, Santos-Guerra A, Jansen RK. Statistical hybrid detection and the inference of ancestral distribution areas in Tolpis (Asteraceae) Biological Journal of the Linnean Society. 121: 133-149. DOI: 10.1093/Biolinnean/Blw014  0.731
2016 Ashworth MP, Lobban CS, Witkowski A, Theriot EC, Sabir MJ, Baeshen MN, Hajarah NH, Baeshen NA, Sabir JS, Jansen RK. Molecular and Morphological Investigations of the Stauros-bearing, Raphid Pennate Diatoms (Bacillariophyceae): Craspedostauros E.J. Cox, and Staurotropis T.B.B. Paddock, and their Relationship to the Rest of the Mastogloiales. Protist. 168: 48-70. PMID 28043007 DOI: 10.1016/J.Protis.2016.11.001  0.73
2016 Weng ML, Ruhlman TA, Jansen RK. Expansion of inverted repeat does not decrease substitution rates in Pelargonium plastid genomes. The New Phytologist. PMID 27991660 DOI: 10.1111/Nph.14375  0.832
2016 Sabir JS, Jansen RK, Arasappan D, Calderon V, Noutahi E, Zheng C, Park S, Sabir MJ, Baeshen MN, Hajrah NH, Khiyami MA, Baeshen NA, Obaid AY, Al-Malki AL, Sankoff D, et al. The nuclear genome of Rhazya stricta and the evolution of alkaloid diversity in a medically relevant clade of Apocynaceae. Scientific Reports. 6: 33782. PMID 27653669 DOI: 10.1038/Srep33782  0.831
2016 Blazier JC, Jansen RK, Mower JP, Govindu M, Zhang J, Weng ML, Ruhlman TA. Variable presence of the inverted repeat and plastome stability in Erodium. Annals of Botany. PMID 27192713 DOI: 10.1093/Aob/Mcw065  0.822
2016 Weng ML, Ruhlman TA, Jansen RK. Plastid-nuclear interaction and accelerated coevolution in plastid ribosomal genes in Geraniaceae. Genome Biology and Evolution. PMID 27190001 DOI: 10.1093/Gbe/Evw115  0.814
2016 Blazier JC, Ruhlman TA, Weng ML, Rehman SK, Sabir JS, Jansen RK. Divergence of RNA polymerase α subunits in angiosperm plastid genomes is mediated by genomic rearrangement. Scientific Reports. 6: 24595. PMID 27087667 DOI: 10.1038/Srep24595  0.855
2016 Zhang J, Ruhlman TA, Sabir J, Blazier JC, Weng ML, Park S, Jansen RK. Coevolution between nuclear encoded DNA replication, recombination and repair genes and plastid genome complexity. Genome Biology and Evolution. PMID 26893456 DOI: 10.1093/Gbe/Evw033  0.831
2016 Hansen DR, Jansen RK, Sage RF, Villaseñor JL, Simpson BB. Molecular Phylogeny ofPectis(Tageteae, Asteraceae), a C4Genus of the Neotropics, and its Sister GenusPorophyllum Lundellia. 19: 6-38. DOI: 10.25224/1097-993X-19.1.6  0.504
2016 Witkowski A, Li C, Zgłobicka I, Yu S, Ashworth M, Dąbek P, Qin S, Tang C, Krzywda M, Ruppel M, Theriot EC, Jansen RK, Car A, Płociński T, Wang Y, et al. Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa Journal of Coastal Research. 74: 166-195. DOI: 10.2112/Si74-016.1  0.673
2015 Dugas DV, Hernandez D, Koenen EJ, Schwarz E, Straub S, Hughes CE, Jansen RK, Nageswara-Rao M, Staats M, Trujillo JT, Hajrah NH, Alharbi NS, Al-Malki AL, Sabir JS, Bailey CD. Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions, and accelerated rate of evolution in clpP. Scientific Reports. 5: 16958. PMID 26592928 DOI: 10.1038/Srep16958  0.855
2015 Walker JF, Jansen RK, Zanis MJ, Emery NC. Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes. American Journal of Botany. 102: 1751-2. PMID 26546126 DOI: 10.3732/Ajb.1500299  0.434
2015 Li CL, Ashworth MP, Witkowski A, Dąbek P, Medlin LK, Kooistra WH, Sato S, Zgłobicka I, Kurzydłowski KJ, Theriot EC, Sabir JS, Khiyami MA, Mutwakil MH, Sabir MJ, Alharbi NS, ... ... Jansen RK, et al. New Insights into Plagiogrammaceae (Bacillariophyta) Based on Multigene Phylogenies and Morphological Characteristics with the Description of a New Genus and Three New Species. Plos One. 10: e0139300. PMID 26465289 DOI: 10.1371/Journal.Pone.0139300  0.698
2015 Bromke MA, Sabir JS, Alfassi FA, Hajarah NH, Kabli SA, Al-Malki AL, Ashworth MP, Méret M, Jansen RK, Willmitzer L. Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions. Plos One. 10: e0138965. PMID 26440112 DOI: 10.1371/Journal.Pone.0138965  0.659
2015 Park S, Grewe F, Zhu A, Ruhlman TA, Sabir J, Mower JP, Jansen RK. Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers. The New Phytologist. PMID 25989702 DOI: 10.1111/Nph.13467  0.861
2015 Ruhlman TA, Chang WJ, Chen JJ, Huang YT, Chan MT, Zhang J, Liao DC, Blazier JC, Jin X, Shih MC, Jansen RK, Lin CS. NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss. Bmc Plant Biology. 15: 100. PMID 25886915 DOI: 10.1186/S12870-015-0484-7  0.809
2015 Bahieldin A, Atef A, Sabir JS, Gadalla NO, Edris S, Alzohairy AM, Radhwan NA, Baeshen MN, Ramadan AM, Eissa HF, Hassan SM, Baeshen NA, Abuzinadah O, Al-Kordy MA, El-Domyati FM, ... Jansen RK, et al. RNA-Seq analysis of the wild barley (H. spontaneum) leaf transcriptome under salt stress. Comptes Rendus Biologies. 338: 285-97. PMID 25882349 DOI: 10.1016/J.Crvi.2015.03.010  0.358
2015 Theriot EC, Ashworth MP, Nakov T, Ruck E, Jansen RK. Dissecting signal and noise in diatom chloroplast protein encoding genes with phylogenetic information profiling. Molecular Phylogenetics and Evolution. 89: 28-36. PMID 25848969 DOI: 10.1016/J.Ympev.2015.03.012  0.675
2015 Zhang J, Ruhlman TA, Sabir J, Blazier JC, Jansen RK. Coordinated rates of evolution between interacting plastid and nuclear genes in Geraniaceae. The Plant Cell. 27: 563-73. PMID 25724640 DOI: 10.1105/Tpc.114.134353  0.849
2015 Park S, Jansen RK, Park S. Complete plastome sequence of Thalictrum coreanum (Ranunculaceae) and transfer of the rpl32 gene to the nucleus in the ancestor of the subfamily Thalictroideae. Bmc Plant Biology. 15: 40. PMID 25652741 DOI: 10.1186/S12870-015-0432-6  0.786
2015 Downie SR, Jansen RK. A comparative analysis of whole plastid genomes from the apiales: Expansion and contraction of the inverted repeat, mitochondrial to plastid transfer of DNA, and identification of highly divergent noncoding regions Systematic Botany. 40: 336-351. DOI: 10.1600/036364415X686620  0.428
2015 Schwarz EN, Ruhlman TA, Sabir JSM, Hajrah NH, Alharbi NS, Al-Malki AL, Bailey CD, Jansen RK. Plastid genome sequences of legumes reveal parallel inversions and multiple losses of rps16 in papilionoids Journal of Systematics and Evolution. 53: 458-468. DOI: 10.1111/jse.12179  0.839
2014 Alzohairy AM, Gyulai GB, Ramadan MF, Edris S, Sabir JSM, Jansen RK, Eissa HF, Bahieldin A. Retrotransposon-based molecular markers for assessment of genomic diversity. Functional Plant Biology : Fpb. 41: 781-789. PMID 32481032 DOI: 10.1071/Fp13351  0.529
2014 Alzohairy AM, Sabir JSM, Gyulai GB, Younis RAA, Jansen RK, Bahieldin A. Environmental stress activation of plant long-terminal repeat retrotransposons. Functional Plant Biology : Fpb. 41: 557-567. PMID 32481013 DOI: 10.1071/Fp13339  0.447
2014 Bahieldin A, Al-Kordy MA, Shokry AM, Gadalla NO, Al-Hejin AM, Sabir JS, Hassan SM, Al-Ahmadi AA, Schwarz EN, Eissa HF, El-Domyati FM, Jansen RK. Corrected sequence of the wheat plastid genome. Comptes Rendus Biologies. 337: 499-502. PMID 25242688 DOI: 10.1016/j.crvi.2014.07.001  0.843
2014 Sabir JS, Yu M, Ashworth MP, Baeshen NA, Baeshen MN, Bahieldin A, Theriot EC, Jansen RK. Conserved gene order and expanded inverted repeats characterize plastid genomes of Thalassiosirales. Plos One. 9: e107854. PMID 25233465 DOI: 10.1371/Journal.Pone.0107854  0.788
2014 Du Toit Z, Grobler JP, Kotzé A, Jansen R, Brettschneider H, Dalton DL. The complete mitochondrial genome of temminck's ground pangolin (Smutsia temminckii; Smuts, 1832) and phylogenetic position of the Pholidota (Weber, 1904). Gene. 551: 49-54. PMID 25158133 DOI: 10.1016/j.gene.2014.08.040  0.368
2014 Park S, Ruhlman TA, Sabir JS, Mutwakil MH, Baeshen MN, Sabir MJ, Baeshen NA, Jansen RK. Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids. Bmc Genomics. 15: 405. PMID 24884625 DOI: 10.1186/1471-2164-15-405  0.819
2014 Sabir JS, Arasappan D, Bahieldin A, Abo-Aba S, Bafeel S, Zari TA, Edris S, Shokry AM, Gadalla NO, Ramadan AM, Atef A, Al-Kordy MA, El-Domyati FM, Jansen RK. Whole mitochondrial and plastid genome SNP analysis of nine date palm cultivars reveals plastid heteroplasmy and close phylogenetic relationships among cultivars. Plos One. 9: e94158. PMID 24718264 DOI: 10.1371/Journal.Pone.0094158  0.517
2014 Sabir J, Schwarz E, Ellison N, Zhang J, Baeshen NA, Mutwakil M, Jansen R, Ruhlman T. Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes. Plant Biotechnology Journal. 12: 743-54. PMID 24618204 DOI: 10.1111/Pbi.12179  0.868
2014 Ruhlman TA, Jansen RK. The plastid genomes of flowering plants. Methods in Molecular Biology (Clifton, N.J.). 1132: 3-38. PMID 24599844 DOI: 10.1007/978-1-62703-995-6_1  0.731
2014 Ruck EC, Nakov T, Jansen RK, Theriot EC, Alverson AJ. Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms. Genome Biology and Evolution. 6: 644-54. PMID 24567305 DOI: 10.1093/Gbe/Evu039  0.491
2014 Weng ML, Blazier JC, Govindu M, Jansen RK. Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates. Molecular Biology and Evolution. 31: 645-59. PMID 24336877 DOI: 10.1093/Molbev/Mst257  0.856
2014 Alzohairy AM, Gyulai G, Ramadan MF, Edris S, Sabir JSM, Jansen RK, Eissa HF, Bahieldin A. Retrotransposon-based molecular markers for assessment of genomic diversity Functional Plant Biology. 41: 781-789. DOI: 10.1071/FP13351  0.328
2013 Gruenstaeudl M, Santos-Guerra A, Jansen RK. Phylogenetic analyses of Tolpis Adans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization. Cladistics : the International Journal of the Willi Hennig Society. 29: 416-434. PMID 34814375 DOI: 10.1111/cla.12005  0.801
2013 Zhang J, Ruhlman TA, Mower JP, Jansen RK. Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing. Bmc Plant Biology. 13: 228. PMID 24373163 DOI: 10.1186/1471-2229-13-228  0.845
2013 Sabir JS, Baeshen NA, Shokry AM, Gadalla NO, Edris S, Mutwakil MH, Ramadan AM, Atef A, Al-Kordy MA, Abuzinadah OA, El-Domyati FM, Jansen RK, Bahieldin A. Detection of phytochrome-like genes from Rhazya stricta (Apocynaceae) using de novo genome assembly. Comptes Rendus Biologies. 336: 521-9. PMID 24296076 DOI: 10.1016/J.Crvi.2013.10.009  0.525
2013 Alzohairy AM, Gyulai G, Jansen RK, Bahieldin A. Transposable elements domesticated and neofunctionalized by eukaryotic genomes. Plasmid. 69: 1-15. PMID 22960324 DOI: 10.1016/j.plasmid.2012.08.001  0.436
2013 Gruenstaeudl M, Santos-Guerra A, Jansen RK. Phylogenetic analyses of Tolpis Adans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization Cladistics. 29: 416-434. DOI: 10.1111/Cla.12005  0.811
2012 Weng ML, Ruhlman TA, Gibby M, Jansen RK. Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae). Molecular Phylogenetics and Evolution. 64: 654-70. PMID 22677167 DOI: 10.1016/J.Ympev.2012.05.026  0.815
2011 Chris Blazier J, Guisinger MM, Jansen RK. Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae). Plant Molecular Biology. 76: 263-72. PMID 21327834 DOI: 10.1007/S11103-011-9753-5  0.867
2011 Jansen RK, Saski C, Lee SB, Hansen AK, Daniell H. Complete plastid genome sequences of three Rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus. Molecular Biology and Evolution. 28: 835-47. PMID 20935065 DOI: 10.1093/Molbev/Msq261  0.666
2011 Guisinger MM, Kuehl JV, Boore JL, Jansen RK. Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage. Molecular Biology and Evolution. 28: 583-600. PMID 20805190 DOI: 10.1093/Molbev/Msq229  0.855
2011 Goodson BE, Rehman SK, Jansen RK. Molecular systematics and biogeography of Descurainia (Brassicaceae) based on nuclear ITS and non-coding chloroplast DNA Systematic Botany. 36: 957-980. DOI: 10.1600/036364411X604976  0.836
2010 Steele PR, Friar LM, Gilbert LE, Jansen RK. Molecular systematics of the neotropical genus Psiguria (Cucurbitaceae): Implications for phylogeny and species identification. American Journal of Botany. 97: 156-73. PMID 21622376 DOI: 10.3732/Ajb.0900192  0.741
2010 Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK. Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae. Journal of Molecular Evolution. 70: 149-66. PMID 20091301 DOI: 10.1007/S00239-009-9317-3  0.864
2010 Raubeson LA, Jansen RK. Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Science (New York, N.Y.). 255: 1697-9. PMID 17749424 DOI: 10.1126/science.255.5052.1697  0.809
2010 Jansen RK, Palmer JD. A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). Proceedings of the National Academy of Sciences of the United States of America. 84: 5818-22. PMID 16593871 DOI: 10.1073/Pnas.84.16.5818  0.542
2010 Theriot EC, Ashworth M, Ruck E, Nakov T, Jansen RK. A preliminary multi gene phylogeny of the diatoms (Bacillariophyta): Challenges for future research Plant Ecology and Evolution. 143: 278-296. DOI: 10.5091/Plecevo.2010.418  0.639
2009 Gruenstaeudl M, Urtubey E, Jansen RK, Samuel R, Barfuss MH, Stuessy TF. Phylogeny of Barnadesioideae (Asteraceae) inferred from DNA sequence data and morphology. Molecular Phylogenetics and Evolution. 51: 572-87. PMID 19264147 DOI: 10.1016/J.Ympev.2009.01.023  0.842
2009 Haberle RC, Dang A, Lee T, Peñaflor C, Cortes-Burns H, Oestreich A, Raubeson L, Cellinese N, Edwards EJ, Kim ST, Eddie WMM, Jansen RK. Taxonomic and biogeographic implications of a phylogenetic analysis of the Campanulaceae based on three chloroplast genes Taxon. 58: 715-734. DOI: 10.1002/Tax.583003  0.824
2008 Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurtry V, Kuehl JV, Boore J, Jansen RK. Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. Journal of Molecular Evolution. 67: 696-704. PMID 19018585 DOI: 10.1007/S00239-008-9180-7  0.854
2008 Guisinger MM, Kuehl JV, Boore JL, Jansen RK. Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions. Proceedings of the National Academy of Sciences of the United States of America. 105: 18424-9. PMID 19011103 DOI: 10.1073/Pnas.0806759105  0.865
2008 Jansen RK, Wojciechowski MF, Sanniyasi E, Lee SB, Daniell H. Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae). Molecular Phylogenetics and Evolution. 48: 1204-17. PMID 18638561 DOI: 10.1016/J.Ympev.2008.06.013  0.514
2008 Steele PR, Guisinger-Bellian M, Linder CR, Jansen RK. Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids. Molecular Phylogenetics and Evolution. 48: 1013-26. PMID 18620872 DOI: 10.1016/J.Ympev.2008.05.017  0.743
2008 Haberle RC, Fourcade HM, Boore JL, Jansen RK. Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes. Journal of Molecular Evolution. 66: 350-61. PMID 18330485 DOI: 10.1007/S00239-008-9086-4  0.854
2008 Daniell H, Wurdack KJ, Kanagaraj A, Lee SB, Saski C, Jansen RK. The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 723-37. PMID 18214421 DOI: 10.1007/S00122-007-0706-Y  0.471
2007 Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 115: 591. PMID 27520091 DOI: 10.1007/S00122-007-0595-0  0.511
2007 Hansen AK, Escobar LK, Gilbert LE, Jansen RK. Paternal, maternal, and biparental inheritance of the chloroplast genome in Passiflora (Passifloraceae): implications for phylogenetic studies. American Journal of Botany. 94: 42-6. PMID 21642206 DOI: 10.3732/Ajb.94.1.42  0.608
2007 Timme RE, Kuehl JV, Boore JL, Jansen RK. A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. American Journal of Botany. 94: 302-12. PMID 21636403 DOI: 10.3732/Ajb.94.3.302  0.5
2007 Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee SB, Peery R, McNeal JR, Kuehl JV, et al. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proceedings of the National Academy of Sciences of the United States of America. 104: 19369-74. PMID 18048330 DOI: 10.1073/Pnas.0709121104  0.861
2007 Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK. Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Molecular Phylogenetics and Evolution. 45: 547-63. PMID 17644003 DOI: 10.1016/J.Ympev.2007.06.004  0.731
2007 Raubeson LA, Peery R, Chumley TW, Dziubek C, Fourcade HM, Boore JL, Jansen RK. Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. Bmc Genomics. 8: 174. PMID 17573971 DOI: 10.1186/1471-2164-8-174  0.852
2007 Alverson AJ, Jansen RK, Theriot EC. Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Molecular Phylogenetics and Evolution. 45: 193-210. PMID 17553708 DOI: 10.1016/J.Ympev.2007.03.024  0.423
2007 Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 115: 571-90. PMID 17534593 DOI: 10.1007/S00122-007-0567-4  0.493
2007 Lee HL, Jansen RK, Chumley TW, Kim KJ. Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions. Molecular Biology and Evolution. 24: 1161-80. PMID 17329229 DOI: 10.1093/Molbev/Msm036  0.685
2007 Samson N, Bausher MG, Lee SB, Jansen RK, Daniell H. The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. Plant Biotechnology Journal. 5: 339-53. PMID 17309688 DOI: 10.1111/J.1467-7652.2007.00245.X  0.584
2007 Moore MJ, Jansen RK. Origins and biogeography of gypsophily in the chihuahuan desert plant group Tiquilia subg. Eddya (Boraginaceae) Systematic Botany. 32: 392-414. DOI: 10.1600/036364407781179680  0.414
2007 Park KR, Jansen RK. A phylogeny of Euphorbieae subtribe Euphorbiinae (Euphorbiaceae) based on molecular data Journal of Plant Biology. 50: 644-649. DOI: 10.1007/Bf03030608  0.458
2007 Barber JC, Finch CC, Francisco-Ortega J, Santos-Guerra A, Jansen RK. Hybridization in Macaronesian Sideritis (Lamiaceae): Evidence from incongruence of multiple independent nuclear and chloroplast sequence datasets Taxon. 56: 74-88.  0.752
2006 Moore MJ, Tye A, Jansen RK. Patterns of long-distance dispersal in Tiquilia subg. Tiquilia (Boraginaceae): implications for the origins of amphitropical disjuncts and Galapagos Islands endemics. American Journal of Botany. 93: 1163-77. PMID 21642182 DOI: 10.3732/Ajb.93.8.1163  0.544
2006 Ganapathy G, Goodson B, Jansen R, Le HS, Ramachandran V, Warnow T. Pattern identification in biogeography. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 3: 334-46. PMID 17085843 DOI: 10.1109/Tcbb.2006.57  0.764
2006 Wang LS, Warnow T, Moret BM, Jansen RK, Raubeson LA. Distance-based genome rearrangement phylogeny. Journal of Molecular Evolution. 63: 473-83. PMID 17021931 DOI: 10.1007/S00239-005-0216-Y  0.849
2006 Cai Z, Penaflor C, Kuehl JV, Leebens-Mack J, Carlson JE, dePamphilis CW, Boore JL, Jansen RK. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. Bmc Evolutionary Biology. 6: 77. PMID 17020608 DOI: 10.1186/1471-2148-6-77  0.605
2006 Bausher MG, Singh ND, Lee SB, Jansen RK, Daniell H. The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms. Bmc Plant Biology. 6: 21. PMID 17010212 DOI: 10.1186/1471-2229-6-21  0.587
2006 Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms. Bmc Genomics. 7: 222. PMID 16945140 DOI: 10.1186/1471-2164-7-222  0.794
2006 Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK. The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Molecular Biology and Evolution. 23: 2175-90. PMID 16916942 DOI: 10.1093/Molbev/Msl089  0.805
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  0.516
2006 Jansen RK, Kaittanis C, Saski C, Lee SB, Tomkins J, Alverson AJ, Daniell H. Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. Bmc Evolutionary Biology. 6: 32. PMID 16603088 DOI: 10.1186/1471-2148-6-32  0.541
2006 Daniell H, Lee SB, Grevich J, Saski C, Quesada-Vargas T, Guda C, Tomkins J, Jansen RK. Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 1503-18. PMID 16575560 DOI: 10.1007/S00122-006-0254-X  0.461
2006 Lee SB, Kaittanis C, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms. Bmc Genomics. 7: 61. PMID 16553962 DOI: 10.1186/1471-2164-7-61  0.581
2006 Moore MJ, Jansen RK. Molecular evidence for the age, origin, and evolutionary history of the American desert plant genus Tiquilia (Boraginaceae). Molecular Phylogenetics and Evolution. 39: 668-87. PMID 16495087 DOI: 10.1016/J.Ympev.2006.01.020  0.557
2006 Cui L, Veeraraghavan N, Richter A, Wall K, Jansen RK, Leebens-Mack J, Makalowska I, dePamphilis CW. ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Research. 34: D692-6. PMID 16381961 DOI: 10.1093/Nar/Gkj055  0.465
2006 Goodson BE, Santos-Guerra A, Jansen RK. Molecular systematics of Descurainia (Brassicaceae) in the Canary Islands: Biogeographic and taxonomic implications Taxon. 55: 671-682. DOI: 10.2307/25065643  0.836
2006 Timme RE, Kuehl JV, Boore JL, Jansen RK. A Comparison of the First Two Sequenced Chloroplast Genomes in Asteraceae: Lettuce and Sunflower Lawrence Berkeley National Laboratory. DOI: 10.2172/960402  0.418
2006 Hansen AK, Gilbert LE, Simpson BB, Downie SR, Cervi AC, Jansen RK. Phylogenetic relationships and chromosome number evolution in Passiflora Systematic Botany. 31: 138-150. DOI: 10.1600/036364406775971769  0.676
2006 Bain JF, Jansen RK. A chloroplast DNA hairpin structure provides useful phylogenetic data within tribe Senecioneae (Asteraceae) Canadian Journal of Botany. 84: 862-868. DOI: 10.1139/B06-057  0.446
2005 Saski C, Lee SB, Daniell H, Wood TC, Tomkins J, Kim HG, Jansen RK. Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes. Plant Molecular Biology. 59: 309-22. PMID 16247559 DOI: 10.1007/S11103-005-8882-0  0.74
2005 Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW. Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Molecular Biology and Evolution. 22: 1948-63. PMID 15944438 DOI: 10.1093/Molbev/Msi191  0.852
2005 Kim KJ, Choi KS, Jansen RK. Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae). Molecular Biology and Evolution. 22: 1783-92. PMID 15917497 DOI: 10.1093/Molbev/Msi174  0.681
2005 Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L. Methods for obtaining and analyzing whole chloroplast genome sequences. Methods in Enzymology. 395: 348-84. PMID 15865976 DOI: 10.1016/S0076-6879(05)95020-9  0.833
2004 Goldman DH, Jansen RK, van den Berg C, Leitch IJ, Fay MF, Chase MW. Molecular and cytological examination of Calopogon (Orchidaceae, Epidendroideae): circumscription, phylogeny, polyploidy, and possible hybrid speciation. American Journal of Botany. 91: 707-23. PMID 21653426 DOI: 10.3732/Ajb.91.5.707  0.773
2004 Cosner ME, Raubeson LA, Jansen RK. Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes. Bmc Evolutionary Biology. 4: 27. PMID 15324459 DOI: 10.1186/1471-2148-4-27  0.86
2004 Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics (Oxford, England). 20: 3252-5. PMID 15180927 DOI: 10.1093/Bioinformatics/Bth352  0.749
2004 Andrus N, Trusty J, Santos-Guerra A, Jansen RK, Francisco-Ortega J. Using molecular phylogenies to test phytogeographical links between East/South Africa-Southern Arabia and the Macaronesian islands - A review, and the case of Vierea and Pulicaria section Vieraeopsis (Asteraceae) Taxon. 53: 333-346. DOI: 10.2307/4135612  0.827
2004 Kim YD, Kim SH, Kim CH, Jansen RK. Phylogeny of Berberidaceae based on sequences of the chloroplast gene ndhF Biochemical Systematics and Ecology. 32: 291-301. DOI: 10.1016/J.Bse.2003.08.002  0.488
2003 Goertzen LR, Cannone JJ, Gutell RR, Jansen RK. ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae. Molecular Phylogenetics and Evolution. 29: 216-34. PMID 13678678 DOI: 10.1016/S1055-7903(03)00094-0  0.76
2003 Caujapé-Castells J, Jansen RK. The influence of the Miocene Mediterranean desiccation on the geographical expansion and genetic variation of Androcymbium gramineum (Cav.) McBride (Colchicaceae). Molecular Ecology. 12: 1515-25. PMID 12755880 DOI: 10.1046/J.1365-294X.2003.01839.X  0.755
2003 Eddie WMM, Shulkina T, Gaskin J, Haberle RC, Jansen RK. Phylogeny of Campanulaceae s. str. inferred from ITS sequences of nuclear ribosomal DNA Annals of the Missouri Botanical Garden. 90: 554-575. DOI: 10.2307/3298542  0.842
2003 Aguilar JF, Fryxell PA, Jansen RK. Phylogenetic relationships and classification of the Sida generic alliance (Malvaceae) based on nrDNA ITS evidence Systematic Botany. 28: 352-364. DOI: 10.1043/0363-6445-28.2.352  0.477
2003 Loockerman DJ, Turner BL, Jansen RK. Phylogenetic Relationships within the Tageteae (Asteraceae) Based on Nuclear Ribosomal ITS and Chloroplast ndhF Gene Sequences Systematic Botany. 28: 191-207. DOI: 10.1043/0363-6445-28.1.191  0.671
2003 Loockerman DJ, Turner BL, Jansen RK. Phylogenetic relationships within the tageteae (asteraceae) based on nuclear ribosomal its and chloroplast ndhf gene sequences Systematic Botany. 28: 191-207.  0.403
2002 Ferguson CJ, Jansen RK. A chloroplast DNA phylogeny of eastern Phlox (Polemoniaceae): implications of congruence and incongruence with the ITS phylogeny. American Journal of Botany. 89: 1324-35. PMID 21665735 DOI: 10.3732/Ajb.89.8.1324  0.66
2002 Moore MJ, Francisco-Ortega J, Santos-Guerra A, Jansen RK. Chloroplast DNA evidence for the roles of island colonization and extinction in Tolpis (Asteraceae: Lactuceae). American Journal of Botany. 89: 518-26. PMID 21665651 DOI: 10.3732/Ajb.89.3.518  0.702
2002 Francisco-Ortega J, Fuertes-Aguilar J, Kim SC, Santos-Guerra A, Crawford DJ, Jansen RK. Phylogeny of the Macaronesian endemic Crambe section Dendrocrambe (Brassicaceae) based on internal transcribed spacer sequences of nuclear ribosomal DNA. American Journal of Botany. 89: 1984-90. PMID 21665627 DOI: 10.3732/Ajb.89.12.1984  0.692
2002 Barber JC, Francisco-Ortega J, Santos-Guerra A, Turner KG, Jansen RK. Origin of Macaronesian Sideritis L. (Lamioideae: Lamiaceae) inferred from nuclear and chloroplast sequence datasets. Molecular Phylogenetics and Evolution. 23: 293-306. PMID 12099789 DOI: 10.1016/S1055-7903(02)00018-0  0.773
2002 Wang LS, Jansen RK, Moret BM, Raubeson LA, Warnow T. Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 524-35. PMID 11928504  0.824
2002 Goertzen LR, Francisco-Ortega J, Santos-Guerra A, Mower JP, Linder CR, Jansen RK. Molecular systematics of the Asteriscus alliance (Asteraceae: Inuleae) II: Combined nuclear and chloroplast data Systematic Botany. 27: 815-823. DOI: 10.1043/0363-6445-27.4.815  0.838
2002 Kim HG, Loockerman DJ, Jansen RK. Systematic implications of ndhF sequence variation in the Mutisieae (Asteraceae) Systematic Botany. 27: 598-609. DOI: 10.1043/0363-6445-27.3.598  0.515
2002 Fuertes-Aguilar J, Ray MF, Francisco-Ortega J, Santos-Guerra A, Jansen RK. Molecular evidence from chloroplast and nuclear markers for multiple colonizations of Lavatera (Malvaceae) in the Canary Islands Systematic Botany. 27: 74-83. DOI: 10.1043/0363-6445-27.1.74  0.672
2002 Caujapé-Castells J, Jansen RK, Pedrola-Monfort J, Membrives N. Space-time diversification of Androcymbium Willd. (Colchicaceae) in western South Africa Plant Systematics and Evolution. 232: 73-88. DOI: 10.1007/S006060200028  0.396
2001 Francisco-Ortega J, Barber JC, Santos-Guerra A, Febles-Hernández R, Jansen RK. Origin and evolution of the endemic genera of Gonosperminae (Asteraceae: Anthemideae) from the Canary Islands: evidence from nucleotide sequences of the internal transcribed spacers of the nuclear ribosomal DNA. American Journal of Botany. 88: 161-169. PMID 11159136 DOI: 10.2307/2657136  0.789
2001 Caujapé-Castells J, Jansen RK, Membrives N, Pedrola-Monfort J, Montserrat JM, Ardanuy A. Historical biogeography of Androcymbium Willd. (Colchicaceae) in Africa: Evidence from cpDNA RFLPs Botanical Journal of the Linnean Society. 136: 379-392. DOI: 10.1111/J.1095-8339.2001.Tb00581.X  0.355
2001 Goldman DH, Freudenstein JV, Kores PJ, Molvray M, Jarrell DC, Whitten WM, Cameron KM, Jansen RK, Chase MW. Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences Systematic Botany. 26: 670-695. DOI: 10.1043/0363-6445-26.3.670  0.805
2001 Park SJ, Korompai EJ, Francisco-Ortega J, Santos-Guerra A, Jansen RK. Phylogenetic relationships of Tolpis (Asteraceae: Lactuceae) based on ndhF sequence data Plant Systematics and Evolution. 226: 23-33. DOI: 10.1007/S006060170071  0.675
2001 Francisco-Ortega J, Park SJ, Santos-Guerra A, Benabid A, Jansen RK. Origin and evolution of the endemic Macaronesian Inuleae (Asteraceae): Evidence from the internal transcribed spacers of nuclear ribosomal DNA Biological Journal of the Linnean Society. 72: 77-97. DOI: 10.1006/Bijl.2000.0494  0.773
2000 Olmstead RG, Kim KJ, Jansen RK, Wagstaff SJ. The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences Molecular Phylogenetics and Evolution. 16: 96-112. PMID 10877943 DOI: 10.1006/Mpev.1999.0769  0.655
2000 Linder CR, Goertzen LR, Heuvel BV, Francisco-Ortega J, Jansen RK. The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in asteraceae and closely allied families. Molecular Phylogenetics and Evolution. 14: 285-303. PMID 10679161 DOI: 10.1006/Mpev.1999.0706  0.817
2000 Barber JC, Ortega JF, Santos-Guerra A, Marrero A, Jansen RK. Evolution of Endemic Sideritis (Lamiaceae) in Macaronesia: Insights from a Chloroplast DNA Restriction Site Analysis Systematic Botany. 25: 633. DOI: 10.2307/2666725  0.678
2000 Helfgott DM, Francisco-Ortega J, Santos-Guerra A, Jansen RK, Simpson BB. Biogeography and Breeding System Evolution of the Woody Bencomia Alliance (Rosaceae) in Macaronesia Based on ITS Sequence Data Systematic Botany. 25: 82. DOI: 10.2307/2666675  0.776
2000 Prather LA, Ferguson CJ, Jansen RK. Polemoniaceae phylogeny and classification: implications of sequence data from the chloroplast genendhF American Journal of Botany. 87: 1300-1308. DOI: 10.2307/2656723  0.689
1999 Panero JL, Francisco-Ortega J, Jansen RK, Santos-Guerra A. Molecular evidence for multiple origins of woodiness and a New World biogeographic connection of the Macaronesian island endemic Pericallis (Asteraceae: Senecioneae) Proceedings of the National Academy of Sciences of the United States of America. 96: 13886-13891. PMID 10570168 DOI: 10.1073/Pnas.96.24.13886  0.68
1999 Francisco-Ortega J, Fuertes-Aguilar J, Gómez-Campo C, Santos-Guerra A, Jansen RK. Internal Transcribed Spacer Sequence Phylogeny ofCrambeL. (Brassicaceae): Molecular Data Reveal Two Old World Disjunctions Molecular Phylogenetics and Evolution. 11: 361-380. PMID 10196078 DOI: 10.1006/Mpev.1998.0592  0.678
1999 Panero JL, Jansen RK, Clevinger JA. Phylogenetic relationships of subtribe Ecliptinae (Asteraceae: Heliantheae) based on chloroplast DNA restriction site data American Journal of Botany. 86: 413-427. DOI: 10.2307/2656762  0.478
1999 Ferguson CJ, Kramer F, Jansen RK. Relationships of Eastern North American Phlox (Polemoniaceae) Based on ITS Sequence Data Systematic Botany. 24: 616. DOI: 10.2307/2419646  0.671
1999 Caujape-Castells J, Jansen RK, Pedrola-Monfort J, Membrives N. Chloroplast DNA Restriction Site Phylogeny of the Genus Androcymbium (Colchicaceae) Systematic Botany. 24: 581. DOI: 10.2307/2419644  0.401
1999 Francisco-Ortega J, Goertzen LR, Santos-Guerra A, Benabid A, Jansen RK. Molecular Systematics of the Asteriscus Alliance (Asteraceae: Inuleae) I: Evidence from the Internal Transcribed Spacers of Nuclear Ribosomal DNA Systematic Botany. 24: 249. DOI: 10.2307/2419551  0.812
1999 Kim Y-, Lee J, Sun Y, Lee S, Kim S-, Jansen RK. Molecular evidence for the phylogenetic position ofHanabusaya asiatica Nakai (Campanulaceae), an endemic species in Korea Journal of Plant Biology. 42: 168-173. DOI: 10.1007/Bf03031026  0.492
1999 Ferguson CJ, Levin DA, Jansen RK. Natural hybridization between an outcrossing and a selfingPhlox (Polemoniaceae): The maternal species of F1 hybrids Plant Systematics and Evolution. 218: 153-158. DOI: 10.1007/Bf01087043  0.673
1999 Mason-Gamer RJ, Holsinger KE, Jansen RK. Chloroplast DNA variation inCoreopsis nuecensoides andC. nuecensis (Asteraceae), a presumed progenitor-derivative species pair Plant Systematics and Evolution. 218: 5-12. DOI: 10.1007/BF01087029  0.708
1999 Kim S, Crawford DJ, Jansen RK, Santos-Guerra A. The use of a non-coding region of chloroplast DNA in phylogenetic studies of the subtribeSonchinae (Asteraceae:Lactuceae) Plant Systematics and Evolution. 215: 85-99. DOI: 10.1007/Bf00984649  0.509
1998 Kim HG, Keeley SC, Vroom PS, Jansen RK. Molecular evidence for an African origin of the Hawaiian endemic Hesperomannia (Asteraceae). Proceedings of the National Academy of Sciences of the United States of America. 95: 15440-5. PMID 9860987 DOI: 10.1073/Pnas.95.26.15440  0.497
1998 Kim K, Jansen RK. A chloroplast DNA phylogeny of lilacs (Syringa, Oleaceae): plastome groups show a strong correlation with crossing groups American Journal of Botany. 85: 1338-1351. DOI: 10.2307/2446643  0.496
1998 Kim Y, Jansen RK. Chloroplast DNA restriction site variation and phylogeny of the Berberidaceae American Journal of Botany. 85: 1766-1778. DOI: 10.2307/2446511  0.466
1998 Wen J, Shi S, Jansen RK, Zimmer EA. Phylogeny and biogeography of Aralia sect. Aralia (Araliaceae) American Journal of Botany. 85: 866-875. DOI: 10.2307/2446422  0.589
1998 Prather LA, Jansen RK. Phylogeny of Cobaea (Polemoniaceae) Based on Sequence Data from the ITS Region of Nuclear Ribosomal DNA Systematic Botany. 23: 57. DOI: 10.2307/2419574  0.475
1997 Cosner ME, Jansen RK, Palmer JD, Downie SR. The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): Multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families Current Genetics. 31: 419-429. PMID 9162114 DOI: 10.1007/S002940050225  0.686
1997 Francisco-Ortega J, Santos-Guerra A, Hines A, Jansen RK. Molecular evidence for a Mediterranean origin of the Macaronesian endemic genus Argyranthemum (Asteraceae) American Journal of Botany. 84: 1595-1613. DOI: 10.2307/2446622  0.736
1997 Panero JL, Jansen RK. Chloroplast dna restriction site study of Verbesina (Asteraceae: Heliantheae) American Journal of Botany. 84: 382-392. DOI: 10.2307/2446011  0.469
1996 Francisco-Ortega J, Jansen RK, Santos-Guerra A. Chloroplast DNA evidence of colonization, adaptive radiation, and hybridization in the evolution of the Macaronesian flora Proceedings of the National Academy of Sciences of the United States of America. 93: 4085-4090. PMID 11607675 DOI: 10.1073/pnas.93.9.4085  0.616
1996 Kim S, Crawford DJ, Jansen RK. Phylogenetic Relationships among the Genera of the Subtribe Sonchinae (Asteraceae): Evidence from ITS Sequences Systematic Botany. 21: 417. DOI: 10.2307/2419668  0.438
1996 Kim Y, Jansen RK. Phylogenetic Implications of rbcL and ITS Sequence Variation in the Berberidaceae Systematic Botany. 21: 381. DOI: 10.2307/2419666  0.506
1996 Bain JF, Jansen RK. Numerous chloroplast DNA polymorphisms are shared among different populations and species in the aureoid Senecio (Packera) complex Canadian Journal of Botany. 74: 1719-1728. DOI: 10.1139/B96-209  0.382
1996 Levin DA, Francisco-Ortega J, Jansen RK. Hybridization and the Extinction of Rare Plant Species Conservation Biology. 10: 10-16. DOI: 10.1046/J.1523-1739.1996.10010010.X  0.622
1996 Wen J, Jansen RK, Kilgore K. Evolution of the Eastern Asian and Eastern North American disjunct genus Symplocarpus (Araceae): insights from chloroplast DNA restriction site data Biochemical Systematics and Ecology. 24: 735-747. DOI: 10.1016/S0305-1978(96)00070-1  0.571
1996 Anderson GJ, Jansen RK, Kim Y. The origin and relationships of the pepino,Solanum muricatum (solanaceae): DNA restriction fragment evidence Economic Botany. 50: 369-380. DOI: 10.1007/Bf02866519  0.665
1995 Kim KJ, Jansen RK. ndhF sequence evolution and the major clades in the sunflower family Proceedings of the National Academy of Sciences of the United States of America. 92: 10379-10383. PMID 7479788 DOI: 10.1073/pnas.92.22.10379  0.411
1995 Francisco-Ortega J, Jansen RK, Crawford DJ, Santos-Guerra A. Chloroplast DNA Evidence for Intergeneric Relationships of the Macaronesian Endemic Genus Argyranthemum (Asteraceae) Systematic Botany. 20: 413. DOI: 10.2307/2419801  0.673
1995 Urbatsch LE, Jansen RK. Phylogenetic Affinities Among and Within the Coneflower Genera (Asteraceae, Heliantheae), a Chloroplast DNA Analysis Systematic Botany. 20: 28. DOI: 10.2307/2419630  0.491
1995 Whitton J, Wallace RS, Jansen RK. Phylogenetic relationships and patterns of character change in the tribe Lactuceae (Asteraceae) based on chloroplast DNA restriction site variation Canadian Journal of Botany. 73: 1058-1073. DOI: 10.1139/B95-115  0.82
1995 Mason-Gamer RJ, Holsinger KE, Jansen RK. Chloroplast DNA haplotype variation within and among populations of Coreopsis grandiflora (Asteraceae) Molecular Biology and Evolution. 12: 371-381. DOI: 10.1093/Oxfordjournals.Molbev.A040228  0.69
1995 Bain JF, Jansen RK. A phylogenetic analysis of the aureoidSenecio (Asteraceae) complex based on ITS sequence data Plant Systematics and Evolution. 195: 209-219. DOI: 10.1007/Bf00989297  0.454
1995 Wallace RS, Jansen RK. DNA evidence for multiple origins of intergeneric allopolyploids in annualMicroseris (Asteraceae) Plant Systematics and Evolution. 198: 253-265. DOI: 10.1007/Bf00984740  0.645
1995 Hempel AL, Reeves PA, Olmstead RG, Jansen RK. Implications of rbcL sequence data for higher order relationships of the Loasaceae and the anomalous aquatic plant Hydrostachys (Hydrostachyaceae) Plant Systematics and Evolution. 194: 25-37. DOI: 10.1007/Bf00983214  0.834
1995 Wen J, Jansen RK. Morphological and molecular comparisons ofCampsis grandiflora andC. radicans (Bignoniaceae), an eastern Asian and eastern North American vicariad species pair Plant Systematics and Evolution. 196: 173-183. DOI: 10.1007/Bf00982958  0.568
1994 Mione T, Olmstead RC, Jansen RK, Anderson GJ. Systematic implications of chloroplast DNA variation in Jaltomata and selected physaloid genera (Solanaceae) American Journal of Botany. 81: 912-918. DOI: 10.2307/2445772  0.328
1994 Mason RJ, Holsinger KE, Jansen RK. Biparental Inheritance of the Chloroplast Genome in Coreopsis (Asteraceae) Journal of Heredity. 85: 171-173. DOI: 10.1093/oxfordjournals.jhered.a111430  0.363
1994 Mason RJ, Holsinger KE, Jansen RK. Biparental inheritance of the chloroplast genome in Coreopsis (asteraceae) Journal of Heredity. 85: 171-173. DOI: 10.1093/Oxfordjournals.Jhered.A111430  0.469
1994 Kim KJ, Jansen RK. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA Plant Systematics and Evolution. 190: 157-185. DOI: 10.1007/BF00986191  0.437
1994 Keeley SC, Jansen RK. Chloroplast DNA restriction site variation in the Vernonieae (Asteraceae), an initial appraisal of the relationship of New and Old World taxa and the monophyly of Vernonia Plant Systematics and Evolution. 193: 249-265. DOI: 10.1007/Bf00983554  0.438
1994 Kim Y-, Jansen RK. Characterization and phylogenetic distribution of a chloroplast DNA rearrangement in theBerberidaceae Plant Systematics and Evolution. 193: 107-114. DOI: 10.1007/Bf00983544  0.482
1994 Cosner ME, Jansen RK, Lammers TG. Phylogenetic relationships in theCampanulales based onrbcL sequences Plant Systematics and Evolution. 190: 79-95. DOI: 10.1007/Bf00937860  0.517
1993 Holsinger KE, Jansen RK. Phylogenetic analysis of restriction site data. Methods in Enzymology. 224: 439-55. PMID 8264404 DOI: 10.1016/0076-6879(93)24034-R  0.434
1993 Michaels HJ, Scott KM, Olmstead RG, Szaro T, Jansen RK, Palmer JD. Interfamilial Relationships of the Asteraceae: Insights from rbcL Sequence Variation Annals of the Missouri Botanical Garden. 80: 742. DOI: 10.2307/2399858  0.732
1993 Johansson JT, Jansen RK. Chloroplast DNA variation and phylogeny of theRanunculaceae Plant Systematics and Evolution. 187: 29-49. DOI: 10.1007/Bf00994090  0.51
1992 Kim K, Turner BL, Jansen RK. Phylogenetic and Evolutionary Implications of Interspecific Chloroplast DNA Variation in Krigia (Asteraceae-Lactuceae) Systematic Botany. 17: 449. DOI: 10.2307/2419484  0.746
1992 Kim K, Jansen RK, Wallace RS, Michaels HJ, Palmer JD. Phylogenetic Implications of rbcL Sequence Variation in the Asteraceae Annals of the Missouri Botanical Garden. 79: 428. DOI: 10.2307/2399779  0.813
1992 Bremer K, Jansen RK. A New Subfamily of the Asteraceae Annals of the Missouri Botanical Garden. 79: 414. DOI: 10.2307/2399777  0.405
1992 Bremer K, Jansen RK, Karis PO, Källersjö M, Keeley SC, Kim K‐, Michaels HJ, Palmer JD, Wallace RS. A review of the phylogeny and classification of the Asteraceae Nordic Journal of Botany. 12: 141-148. DOI: 10.1111/J.1756-1051.1992.Tb01281.X  0.762
1992 Raubeson LA, Jansen RK. A rare chloroplast-DNA structural mutation is shared by all conifers Biochemical Systematics and Ecology. 20: 17-24. DOI: 10.1016/0305-1978(92)90067-N  0.771
1992 Kim K, Jansen RK, Turner BL. EVOLUTIONARY IMPLICATIONS OF INTRASPECIFIC CHLOROPLAST DNA VARIATION IN DWARF DANDELIONS (KRIGIA; ASTERACEAE) American Journal of Botany. 79: 708-715. DOI: 10.1002/J.1537-2197.1992.Tb14612.X  0.656
1991 Jansen RK, Wallace RS, Kim K, Chambers KL. SYSTEMATIC IMPLICATIONS OF CHLOROPLAST DNA VARIATION IN THE SUBTRIBE MICROSERIDINAE (ASTERACEAE: LACTUCEAE) American Journal of Botany. 78: 1015-1027. DOI: 10.2307/2444890  0.67
1991 Philbrick CT, Jansen RK. Phylogenetic Studies of North American Callitriche (Callitrichaceae) Using Chloroplast DNA Restriction Fragment Analysis Systematic Botany. 16: 478. DOI: 10.2307/2419338  0.409
1991 Keeley SC, Jansen RK. Evidence from Chloroplast DNA for the Recognition of a New Tribe, the Tarchonantheae, and the Tribal Placement of Pluchea (Asteraceae) Systematic Botany. 16: 173. DOI: 10.2307/2418981  0.434
1991 Jansen RK, Michaels HJ, Palmer JD. Phylogeny and Character Evolution in the Asteraceae Based on Chloroplast DNA Restriction Site Mapping Systematic Botany. 16: 98. DOI: 10.2307/2418976  0.622
1991 Johansson JT, Jansen RK. Chloroplast DNA variation among five species ofRanunculaceae: Structure, sequence divergence, and phylogenetic relationships Plant Systematics and Evolution. 178: 9-25. DOI: 10.1007/BF00937979  0.388
1991 Bremer B, Jansen RK. COMPARATIVE RESTRICTION SITE MAPPING OF CHLOROPLAST DNA IMPLIES NEW PHYLOGENETIC RELATIONSHIPS WITHIN RUBIACEAE American Journal of Botany. 78: 198-213. DOI: 10.1002/J.1537-2197.1991.Tb15747.X  0.389
1990 Jansen RK, Holsinger KE, Michaels HJ, Palmer JD. PHYLOGENETIC ANALYSIS OF CHLOROPLAST DNA RESTRICTION SITE DATA AT HIGHER TAXONOMIC LEVELS: AN EXAMPLE FROM THE ASTERACEAE. Evolution; International Journal of Organic Evolution. 44: 2089-2105. PMID 28564424 DOI: 10.1111/J.1558-5646.1990.Tb04314.X  0.534
1990 Wallace RS, Jansen RK. Systematic Implications of Chloroplast DNA Variation in the Genus Microseris (Asteraceae: Lactuceae) Systematic Botany. 15: 606. DOI: 10.2307/2419157  0.649
1988 Jansen RK, Palmer JD. PHYLOGENETIC IMPLICATIONS OF CHLOROPLAST DNA RESTRICTION SITE VARIATION IN THE MUTISIEAE (ASTERACEAE). American Journal of Botany. 75: 753-766. PMID 30139093 DOI: 10.1002/J.1537-2197.1988.Tb13496.X  0.58
1988 Palmer JD, Jansen RK, Michaels HJ, Chase MW, Manhart JR. Chloroplast DNA Variation and Plant Phylogeny Annals of the Missouri Botanical Garden. 75: 1180. DOI: 10.2307/2399279  0.607
1988 Steele KP, Holsinger KE, Jansen RK, Taylor DW. PHYLOGENETIC RELATIONSHIPS IN GREEN PLANTS—A COMMENT ON THE USE OF 5S RIBOSOMAL RNA SEQUENCES BY BREMER ET AL. Taxon. 37: 135-138. DOI: 10.2307/1220943  0.433
1987 Jansen RK, Palmer JD. Chloroplast DNA from lettuce and Barnadesia (Asteraceae): structure, gene localization, and characterization of a large inversion Current Genetics. 11: 553-564. DOI: 10.1007/Bf00384619  0.651
1981 Jansen RK. Systematics of Spilanthes (Compositae: Heliantheae) Systematic Botany. 6: 231. DOI: 10.2307/2418284  0.389
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