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David A. Relman - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Microbiology Biology, Molecular Biology, Immunology
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Year Citation  Score
2022 Wells PM, Sprockett DD, Bowyer RCE, Kurushima Y, Relman DA, Williams FMK, Steves CJ. Influential factors of saliva microbiota composition. Scientific Reports. 12: 18894. PMID 36344584 DOI: 10.1038/s41598-022-23266-x  0.744
2020 Sprockett DD, Martin M, Costello EK, Burns AR, Holmes SP, Gurven MD, Relman DA. Microbiota assembly, structure, and dynamics among Tsimane horticulturalists of the Bolivian Amazon. Nature Communications. 11: 3772. PMID 32728114 DOI: 10.1038/S41467-020-17541-6  0.758
2020 Celis AI, Relman DA. Competitors versus Collaborators: Micronutrient Processing by Pathogenic and Commensal Human-Associated Gut Bacteria. Molecular Cell. 78: 570-576. PMID 32442503 DOI: 10.1016/J.Molcel.2020.03.032  0.383
2020 Relman DA. Thinking about the microbiome as a causal factor in human health and disease: philosophical and experimental considerations. Current Opinion in Microbiology. 54: 119-126. PMID 32114367 DOI: 10.1016/J.Mib.2020.01.018  0.37
2020 Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, ... ... Relman DA, et al. Clades of huge phages from across Earth's ecosystems. Nature. PMID 32051592 DOI: 10.1038/S41586-020-2007-4  0.367
2020 Proctor DM, Shelef KM, Gonzalez A, Davis CL, Dethlefsen L, Burns AR, Loomer PM, Armitage GC, Ryder MI, Millman ME, Knight R, Holmes SP, Relman DA. Microbial biogeography and ecology of the mouth and implications for periodontal diseases. Periodontology 2000. 82: 26-41. PMID 31850642 DOI: 10.1111/Prd.12268  0.372
2019 Yaffe E, Relman DA. Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. Nature Microbiology. PMID 31873203 DOI: 10.1038/S41564-019-0625-0  0.386
2019 Roth TL, Switzer A, Watanabe-Chailland M, Bik EM, Relman DA, Romick-Rosendale LE, Ollberding NJ. Reduced Gut Microbiome Diversity and Metabolome Differences in Rhinoceros Species at Risk for Iron Overload Disorder. Frontiers in Microbiology. 10: 2291. PMID 31649637 DOI: 10.3389/Fmicb.2019.02291  0.351
2019 Sprockett D, Fischer N, Boneh RS, Turner D, Kierkus J, Sladek M, Escher JC, Wine E, Yerushalmi B, Dias JA, Shaoul R, Kori M, Snapper SB, Holmes S, Bousvaros A, ... ... Relman DA, et al. Treatment-Specific Composition of the Gut Microbiota Is Associated With Disease Remission in a Pediatric Crohn's Disease Cohort. Inflammatory Bowel Diseases. PMID 31276165 DOI: 10.1093/Ibd/Izz130  0.765
2018 Relman DA, Lipsitch M. Microbiome as a tool and a target in the effort to address antimicrobial resistance. Proceedings of the National Academy of Sciences of the United States of America. 115: 12902-12910. PMID 30559176 DOI: 10.1073/Pnas.1717163115  0.312
2018 Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome. 6: 226. PMID 30558668 DOI: 10.1186/S40168-018-0605-2  0.302
2018 Goltsman DSA, Sun CL, Proctor DM, DiGiulio DB, Robaczewska A, Thomas BC, Shaw GM, Stevenson DK, Holmes SP, Banfield JF, Relman DA. Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome. Genome Research. PMID 30232199 DOI: 10.1101/Gr.236000.118  0.381
2018 Proctor DM, Fukuyama JA, Loomer PM, Armitage GC, Lee SA, Davis NM, Ryder MI, Holmes SP, Relman DA. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. Nature Communications. 9: 681. PMID 29445174 DOI: 10.1038/S41467-018-02900-1  0.342
2018 Sprockett D, Fukami T, Relman DA. Role of priority effects in the early-life assembly of the gut microbiota. Nature Reviews. Gastroenterology & Hepatology. PMID 29362469 DOI: 10.1038/Nrgastro.2017.173  0.771
2018 Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Relman DA, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8  0.336
2017 Dudek NK, Sun CL, Burstein D, Kantor RS, Aliaga Goltsman DS, Bik EM, Thomas BC, Banfield JF, Relman DA. Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome. Current Biology : Cb. PMID 29153320 DOI: 10.1016/J.Cub.2017.10.040  0.373
2017 Moss EL, Falconer SB, Tkachenko E, Wang M, Systrom H, Mahabamunuge J, Relman DA, Hohmann EL, Bhatt AS. Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients. Plos One. 12: e0182585. PMID 28827811 DOI: 10.1371/Journal.Pone.0182585  0.37
2017 Fukuyama J, Rumker L, Sankaran K, Jeganathan P, Dethlefsen L, Relman DA, Holmes SP. Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment. Plos Computational Biology. 13: e1005706. PMID 28821012 DOI: 10.1371/Journal.Pcbi.1005706  0.352
2017 Costello EK, Sun CL, Carlisle EM, Morowitz MJ, Banfield JF, Relman DA. Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant. Scientific Reports. 7: 3764. PMID 28630471 DOI: 10.1038/S41598-017-03821-7  0.362
2017 Proctor DM, Relman DA. The Landscape Ecology and Microbiota of the Human Nose, Mouth, and Throat. Cell Host & Microbe. 21: 421-432. PMID 28407480 DOI: 10.1016/J.Chom.2017.03.011  0.326
2017 Hahn AS, Altman T, Konwar KM, Hanson NW, Kim D, Relman DA, Dill DL, Hallam SJ. A geographically-diverse collection of 418 human gut microbiome pathway genome databases. Scientific Data. 4: 170035. PMID 28398290 DOI: 10.1038/Sdata.2017.35  0.367
2016 Lindow JC, Wunder EA, Popper SJ, Min JN, Mannam P, Srivastava A, Yao Y, Hacker KP, Raddassi K, Lee PJ, Montgomery RR, Shaw AC, Hagan JE, Araújo GC, Nery N, ... Relman DA, et al. Cathelicidin Insufficiency in Patients with Fatal Leptospirosis. Plos Pathogens. 12: e1005943. PMID 27812211 DOI: 10.1371/Journal.Ppat.1005943  0.315
2016 Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, et al. A new view of the tree of life. Nature Microbiology. 1: 16048. PMID 27572647 DOI: 10.1038/Nmicrobiol.2016.48  0.337
2016 Charbonneau MR, Blanton LV, DiGiulio DB, Relman DA, Lebrilla CB, Mills DA, Gordon JI. A microbial perspective of human developmental biology. Nature. 535: 48-55. PMID 27383979 DOI: 10.1038/Nature18845  0.38
2016 Relman DA. Gut microbiota: How to build healthy growth-promoting gut communities. Nature Reviews. Gastroenterology & Hepatology. PMID 27188819 DOI: 10.1038/Nrgastro.2016.74  0.331
2016 Bik EM, Costello EK, Switzer AD, Callahan BJ, Holmes SP, Wells RS, Carlin KP, Jensen ED, Venn-Watson S, Relman DA. Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea. Nature Communications. 7: 10516. PMID 26839246 DOI: 10.1038/Ncomms10516  0.397
2016 Inglesby TV, Relman DA. How likely is it that biological agents will be used deliberately to cause widespread harm? Policymakers and scientists need to take seriously the possibility that potential pandemic pathogens will be misused. Embo Reports. 17: 127-30. PMID 26682799 DOI: 10.15252/Embr.201541674  0.318
2015 Hoy YE, Bik EM, Lawley TD, Holmes SP, Monack DM, Theriot JA, Relman DA. Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time. Plos One. 10: e0142825. PMID 26565698 DOI: 10.1371/Journal.Pone.0142825  0.704
2015 DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, Sun CL, Goltsman DS, Wong RJ, Shaw G, Stevenson DK, Holmes SP, Relman DA. Temporal and spatial variation of the human microbiota during pregnancy. Proceedings of the National Academy of Sciences of the United States of America. 112: 11060-5. PMID 26283357 DOI: 10.1073/Pnas.1502875112  0.309
2015 Relman DA. Actionable sequence data on infectious diseases in the clinical workplace. Clinical Chemistry. 61: 38-40. PMID 25398849 DOI: 10.1373/Clinchem.2014.229211  0.352
2014 Modi SR, Collins JJ, Relman DA. Antibiotics and the gut microbiota. The Journal of Clinical Investigation. 124: 4212-8. PMID 25271726 DOI: 10.1172/Jci72333  0.394
2014 Bik EM, Relman DA. Unrest at home: diarrheal disease and microbiota disturbance. Genome Biology. 15: 120. PMID 25002208 DOI: 10.1186/Gb4182  0.302
2014 Costello EK, Relman DA. Population health: immaturity in the gut microbial community. Nature. 510: 344-5. PMID 24896185 DOI: 10.1038/Nature13347  0.324
2014 Relman DA, Gilbert JA, Knight R. The promise of the microbiome: Function and dysfunction in humans and beyond Science. 345: 226-226. DOI: 10.1126/Science.345.6193.226-C  0.381
2014 Relman DA, Falkow S. A Molecular Perspective of Microbial Pathogenicity Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases. 1: 1-10. DOI: 10.1016/B978-1-4557-4801-3.00001-1  0.524
2013 Yan M, Pamp SJ, Fukuyama J, Hwang PH, Cho DY, Holmes S, Relman DA. Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage. Cell Host & Microbe. 14: 631-40. PMID 24331461 DOI: 10.1016/J.Chom.2013.11.005  0.376
2013 Petschow B, Doré J, Hibberd P, Dinan T, Reid G, Blaser M, Cani PD, Degnan FH, Foster J, Gibson G, Hutton J, Klaenhammer TR, Ley R, Nieuwdorp M, Pot B, ... Relman D, et al. Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences. 1306: 1-17. PMID 24266656 DOI: 10.1111/Nyas.12303  0.325
2013 Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA. Microbiome assembly across multiple body sites in low-birthweight infants. Mbio. 4: e00782-13. PMID 24169577 DOI: 10.1128/Mbio.00782-13  0.315
2013 Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL. Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proceedings of the National Academy of Sciences of the United States of America. 110: 17059-64. PMID 24062455 DOI: 10.1073/Pnas.1306070110  0.33
2013 Sun CL, Relman DA. Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome. Genome Biology. 14: 127. PMID 23906048 DOI: 10.1186/Gb-2013-14-7-127  0.36
2013 Relman DA. Metagenomics, infectious disease diagnostics, and outbreak investigations: sequence first, ask questions later? Jama. 309: 1531-2. PMID 23571595 DOI: 10.1001/Jama.2013.3678  0.354
2013 Relman DA. Microbiology. Undernutrition--looking within for answers. Science (New York, N.Y.). 339: 530-2. PMID 23363770 DOI: 10.1126/Science.1234723  0.309
2013 Relman DA. Restoration of the gut microbial habitat as a disease therapy. Nature Biotechnology. 31: 35-7. PMID 23302933 DOI: 10.1038/Nbt.2475  0.362
2013 Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Research. 23: 111-20. PMID 22936250 DOI: 10.1101/Gr.142315.112  0.388
2012 Popper SJ, Gordon A, Liu M, Balmaseda A, Harris E, Relman DA. Temporal dynamics of the transcriptional response to dengue virus infection in Nicaraguan children. Plos Neglected Tropical Diseases. 6: e1966. PMID 23285306 DOI: 10.1371/Journal.Pntd.0001966  0.324
2012 Relman DA. The human microbiome: ecosystem resilience and health. Nutrition Reviews. 70: S2-9. PMID 22861804 DOI: 10.1111/J.1753-4887.2012.00489.X  0.364
2012 Chung H, Pamp SJ, Hill JA, Surana NK, Edelman SM, Troy EB, Reading NC, Villablanca EJ, Wang S, Mora JR, Umesaki Y, Mathis D, Benoist C, Relman DA, Kasper DL. Gut immune maturation depends on colonization with a host-specific microbiota. Cell. 149: 1578-93. PMID 22726443 DOI: 10.1016/J.Cell.2012.04.037  0.347
2012 Lemon KP, Armitage GC, Relman DA, Fischbach MA. Microbiota-targeted therapies: an ecological perspective. Science Translational Medicine. 4: 137rv5. PMID 22674555 DOI: 10.1126/Scitranslmed.3004183  0.348
2012 Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA. The application of ecological theory toward an understanding of the human microbiome. Science (New York, N.Y.). 336: 1255-62. PMID 22674335 DOI: 10.1126/Science.1224203  0.364
2012 Pride DT, Salzman J, Relman DA. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environmental Microbiology. 14: 2564-76. PMID 22583485 DOI: 10.1111/J.1462-2920.2012.02775.X  0.359
2012 Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC. Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Research. 22: 1107-19. PMID 22434425 DOI: 10.1101/Gr.131482.111  0.384
2012 Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. The Isme Journal. 6: 915-26. PMID 22158393 DOI: 10.1038/Ismej.2011.169  0.397
2011 Dieterich C, Relman DA. Modulation of the host interferon response and ISGylation pathway by B. pertussis filamentous hemagglutinin. Plos One. 6: e27535. PMID 22140447 DOI: 10.1371/Journal.Pone.0027535  0.363
2011 Relman DA. Microbial genomics and infectious diseases. The New England Journal of Medicine. 365: 347-57. PMID 21793746 DOI: 10.1056/Nejmra1003071  0.347
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Relman DA, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.313
2011 Rubins KH, Hensley LE, Relman DA, Brown PO. Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus. Plos One. 6: e15615. PMID 21267444 DOI: 10.1371/Journal.Pone.0015615  0.319
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proceedings of the National Academy of Sciences of the United States of America. 108: 1128-33. PMID 21191099 DOI: 10.1073/Pnas.1010992108  0.393
2011 Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Research. 21: 126-36. PMID 21149389 DOI: 10.1101/Gr.111732.110  0.375
2011 Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proceedings of the National Academy of Sciences of the United States of America. 108: 4554-61. PMID 20847294 DOI: 10.1073/Pnas.1000087107  0.369
2011 Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 108: 4547-53. PMID 20547834 DOI: 10.1073/Pnas.1000089107  0.388
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 3 (1128-1133) DOI: 10.1073/pnas.1010992108) Proceedings of the National Academy of Sciences of the United States of America. 108: 4512. DOI: 10.1073/Pnas.1102689108  0.316
2010 Harrington ED, Arumugam M, Raes J, Bork P, Relman DA. SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (Oxford, England). 26: 2979-80. PMID 20966005 DOI: 10.1093/Bioinformatics/Btq564  0.308
2010 DiGiulio DB, Gervasi M, Romero R, Mazaki-Tovi S, Vaisbuch E, Kusanovic JP, Seok KS, Gómez R, Mittal P, Gotsch F, Chaiworapongsa T, Oyarzún E, Kim CJ, Relman DA. Microbial invasion of the amniotic cavity in preeclampsia as assessed by cultivation and sequence-based methods. Journal of Perinatal Medicine. 38: 503-13. PMID 20482470 DOI: 10.1515/Jpm.2010.078  0.351
2010 Waddell SJ, Popper SJ, Rubins KH, Griffiths MJ, Brown PO, Levin M, Relman DA. Dissecting interferon-induced transcriptional programs in human peripheral blood cells. Plos One. 5: e9753. PMID 20339534 DOI: 10.1371/Journal.Pone.0009753  0.316
2010 Bik EM, Long CD, Armitage GC, Loomer P, Emerson J, Mongodin EF, Nelson KE, Gill SR, Fraser-Liggett CM, Relman DA. Bacterial diversity in the oral cavity of 10 healthy individuals. The Isme Journal. 4: 962-74. PMID 20336157 DOI: 10.1038/Ismej.2010.30  0.392
2009 Popper SJ, Watson VE, Shimizu C, Kanegaye JT, Burns JC, Relman DA. Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection. The Journal of Infectious Diseases. 200: 657-66. PMID 19583510 DOI: 10.1086/603538  0.317
2009 Julio SM, Inatsuka CS, Mazar J, Dieterich C, Relman DA, Cotter PA. Natural-host animal models indicate functional interchangeability between the filamentous haemagglutinins of Bordetella pertussis and Bordetella bronchiseptica and reveal a role for the mature C-terminal domain, but not the RGD motif, during infection. Molecular Microbiology. 71: 1574-90. PMID 19220744 DOI: 10.1111/J.1365-2958.2009.06623.X  0.363
2009 Digiulio D, Romero R, Kusanovic JP, Gomez R, Kim CJ, Seok K, Gotsch F, Mazaki-Tovi S, Vaisbuch E, Sanders K, Bik E, Chaiworapongsa T, Relman D. 535: A molecular investigation of the microbial diversity and burden in preterm PROM reveals a high rate of infection with a broad range of organisms including gastrointestinal tract microbiota American Journal of Obstetrics and Gynecology. 201: S198-S199. DOI: 10.1016/J.Ajog.2009.10.701  0.329
2008 Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Plos Genetics. 4: e1000255. PMID 19023400 DOI: 10.1371/Journal.Pgen.1000255  0.35
2008 Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Plos Biology. 6: e280. PMID 19018661 DOI: 10.1371/Journal.Pbio.0060280  0.408
2008 DiGiulio DB, Romero R, Amogan HP, Kusanovic JP, Bik EM, Gotsch F, Kim CJ, Erez O, Edwin S, Relman DA. Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. Plos One. 3: e3056. PMID 18725970 DOI: 10.1371/Journal.Pone.0003056  0.315
2008 Rubins KH, Hensley LE, Bell GW, Wang C, Lefkowitz EJ, Brown PO, Relman DA. Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes. Plos One. 3: e2628. PMID 18612436 DOI: 10.1371/Journal.Pone.0002628  0.341
2008 Medini D, Serruto D, Parkhill J, Relman DA, Donati C, Moxon R, Falkow S, Rappuoli R. Microbiology in the post-genomic era. Nature Reviews. Microbiology. 6: 419-30. PMID 18475305 DOI: 10.1038/Nrmicro1901  0.495
2008 Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Applied and Environmental Microbiology. 74: 3143-50. PMID 18359832 DOI: 10.1128/Aem.00191-08  0.307
2008 Lawley TD, Bouley DM, Hoy YE, Gerke C, Relman DA, Monack DM. Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota. Infection and Immunity. 76: 403-16. PMID 17967858 DOI: 10.1128/Iai.01189-07  0.712
2008 Relman D. Diversity of Human Microbial Pathogens and Commensals International Journal of Infectious Diseases. 12: e26. DOI: 10.1016/J.Ijid.2008.05.109  0.397
2007 Popper SJ, Shimizu C, Shike H, Kanegaye JT, Newburger JW, Sundel RP, Brown PO, Burns JC, Relman DA. Gene-expression patterns reveal underlying biological processes in Kawasaki disease. Genome Biology. 8: R261. PMID 18067656 DOI: 10.1186/Gb-2007-8-12-R261  0.331
2007 Dethlefsen L, McFall-Ngai M, Relman DA. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature. 449: 811-8. PMID 17943117 DOI: 10.1038/Nature06245  0.403
2007 Rubins KH, Hensley LE, Wahl-Jensen V, Daddario DiCaprio KM, Young HA, Reed DS, Jahrling PB, Brown PO, Relman DA, Geisbert TW. The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever. Genome Biology. 8: R174. PMID 17725815 DOI: 10.1186/Gb-2007-8-8-R174  0.343
2007 Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proceedings of the National Academy of Sciences of the United States of America. 104: 11889-94. PMID 17620602 DOI: 10.1073/Pnas.0704662104  0.776
2007 Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. Development of the human infant intestinal microbiota. Plos Biology. 5: e177. PMID 17594176 DOI: 10.1371/Journal.Pbio.0050177  0.387
2007 Gogol EB, Cummings CA, Burns RC, Relman DA. Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis. Bmc Genomics. 8: 122. PMID 17509142 DOI: 10.1186/1471-2164-8-122  0.335
2007 Simmons CP, Popper S, Dolocek C, Chau TN, Griffiths M, Dung NT, Long TH, Hoang DM, Chau NV, Thao le TT, Hien TT, Relman DA, Farrar J. Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever. The Journal of Infectious Diseases. 195: 1097-107. PMID 17357045 DOI: 10.1086/512162  0.303
2007 Eckburg PB, Relman DA. The role of microbes in Crohn's disease. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 44: 256-62. PMID 17173227 DOI: 10.1086/510385  0.333
2006 Versalovic J, Relman D. How bacterial communities expand functional repertoires. Plos Biology. 4. PMID 17238278 DOI: 10.1371/Journal.Pbio.0040430  0.394
2006 Diavatopoulos DA, Cummings CA, van der Heide HG, van Gent M, Liew S, Relman DA, Mooi FR. Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes. Journal of Bacteriology. 188: 8385-94. PMID 17041054 DOI: 10.1128/Jb.01081-06  0.369
2006 Nakamura MM, Liew SY, Cummings CA, Brinig MM, Dieterich C, Relman DA. Growth phase- and nutrient limitation-associated transcript abundance regulation in Bordetella pertussis. Infection and Immunity. 74: 5537-48. PMID 16988229 DOI: 10.1128/Iai.00781-06  0.758
2006 Brinig MM, Register KB, Ackermann MR, Relman DA. Genomic features of Bordetella parapertussis clades with distinct host species specificity. Genome Biology. 7: R81. PMID 16956413 DOI: 10.1186/Gb-2006-7-9-R81  0.79
2006 Dethlefsen L, Eckburg PB, Bik EM, Relman DA. Assembly of the human intestinal microbiota. Trends in Ecology & Evolution. 21: 517-23. PMID 16820245 DOI: 10.1016/J.Tree.2006.06.013  0.37
2006 Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. Metagenomic analysis of the human distal gut microbiome. Science (New York, N.Y.). 312: 1355-9. PMID 16741115 DOI: 10.1126/Science.1124234  0.363
2006 Liu M, Popper SJ, Rubins KH, Relman DA. Early days: genomics and human responses to infection. Current Opinion in Microbiology. 9: 312-9. PMID 16679048 DOI: 10.1016/J.Mib.2006.04.006  0.396
2006 Brinig MM, Cummings CA, Sanden GN, Stefanelli P, Lawrence A, Relman DA. Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. Journal of Bacteriology. 188: 2375-82. PMID 16547023 DOI: 10.1128/Jb.188.7.2375-2382.2006  0.787
2006 Cummings CA, Bootsma HJ, Relman DA, Miller JF. Species- and strain-specific control of a complex, flexible regulon by Bordetella BvgAS. Journal of Bacteriology. 188: 1775-85. PMID 16484188 DOI: 10.1128/Jb.188.5.1775-1785.2006  0.329
2006 Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR, Wolber PK, Relman DA, Brown PO. Rapid quantitative profiling of complex microbial populations. Nucleic Acids Research. 34: e5. PMID 16407321 DOI: 10.1093/Nar/Gnj007  0.374
2006 Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F, Perez-Perez G, Blaser MJ, Relman DA. Molecular analysis of the bacterial microbiota in the human stomach. Proceedings of the National Academy of Sciences of the United States of America. 103: 732-7. PMID 16407106 DOI: 10.1073/Pnas.0506655103  0.33
2005 Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR. Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. Plos Pathogens. 1: e45. PMID 16389302 DOI: 10.1371/Journal.Ppat.0010045  0.776
2005 Griffiths MJ, Shafi MJ, Popper SJ, Hemingway CA, Kortok MM, Wathen A, Rockett KA, Mott R, Levin M, Newton CR, Marsh K, Relman DA, Kwiatkowski DP. Genomewide analysis of the host response to malaria in Kenyan children. The Journal of Infectious Diseases. 191: 1599-611. PMID 15838786 DOI: 10.1086/429297  0.313
2005 Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA. Diversity of the human intestinal microbial flora. Science (New York, N.Y.). 308: 1635-8. PMID 15831718 DOI: 10.1126/Science.1110591  0.437
2005 Fredricks DN, Relman DA. The infectious aetiology of disease: The search for new agents Medicine. 33: 37-38. DOI: 10.1383/Medc.33.3.37.61122  0.4
2004 Rubins KH, Hensley LE, Jahrling PB, Whitney AR, Geisbert TW, Huggins JW, Owen A, Leduc JW, Brown PO, Relman DA. The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model. Proceedings of the National Academy of Sciences of the United States of America. 101: 15190-5. PMID 15477590 DOI: 10.1073/Pnas.0405759101  0.35
2004 Jahrling PB, Hensley LE, Martinez MJ, Leduc JW, Rubins KH, Relman DA, Huggins JW. Exploring the potential of variola virus infection of cynomolgus macaques as a model for human smallpox. Proceedings of the National Academy of Sciences of the United States of America. 101: 15196-200. PMID 15477589 DOI: 10.1073/Pnas.0405954101  0.324
2004 Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, Relman DA. Methanogenic Archaea and human periodontal disease. Proceedings of the National Academy of Sciences of the United States of America. 101: 6176-81. PMID 15067114 DOI: 10.1073/Pnas.0308766101  0.77
2004 Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA. Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. Journal of Bacteriology. 186: 1484-92. PMID 14973121 DOI: 10.1128/Jb.186.5.1484-1492.2004  0.793
2003 Relman DA. Shedding Light on Microbial Detection New England Journal of Medicine. 349: 2162-2163. PMID 14645646 DOI: 10.1056/Nejmcibr035737  0.343
2003 Ouverney CC, Armitage GC, Relman DA. Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice. Applied and Environmental Microbiology. 69: 6294-8. PMID 14532094 DOI: 10.1128/Aem.69.10.6294-6298.2003  0.765
2003 Maiwald M, von Herbay A, Fredricks DN, Ouverney CC, Kosek JC, Relman DA. Cultivation of Tropheryma whipplei from cerebrospinal fluid. The Journal of Infectious Diseases. 188: 801-8. PMID 12964110 DOI: 10.1086/378073  0.761
2003 Olson PD, Yoder K, Fajardo L-G LF, Marty AM, van de Pas S, Olivier C, Relman DA. Lethal invasive cestodiasis in immunosuppressed patients. The Journal of Infectious Diseases. 187: 1962-6. PMID 12792874 DOI: 10.1086/375357  0.327
2003 Maiwald M, Lepp PW, Relman DA. Analysis of conserved non-rRNA genes of Tropheryma whipplei Systematic and Applied Microbiology. 26: 3-12. PMID 12747404 DOI: 10.1078/072320203322337254  0.36
2003 Brinig MM, Lepp PW, Ouverney CC, Armitage GC, Relman DA. Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease. Applied and Environmental Microbiology. 69: 1687-94. PMID 12620860 DOI: 10.1128/Aem.69.3.1687-1694.2003  0.765
2003 Bentley SD, Maiwald M, Murphy LD, Pallen MJ, Yeats CA, Dover LG, Norbertczak HT, Besra GS, Quail MA, Harris DE, von Herbay A, Goble A, Rutter S, Squares R, Squares S, ... ... Relman DA, et al. Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet (London, England). 361: 637-44. PMID 12606174 DOI: 10.1016/S0140-6736(03)12597-4  0.363
2003 Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA, Brown PO. Individuality and variation in gene expression patterns in human blood. Proceedings of the National Academy of Sciences of the United States of America. 100: 1896-901. PMID 12578971 DOI: 10.1073/Pnas.252784499  0.301
2003 Eckburg PB, Lepp PW, Relman DA. Archaea and their potential role in human disease Infection and Immunity. 71: 591-596. PMID 12540534 DOI: 10.1128/Iai.71.2.591-596.2003  0.33
2002 Neilan BA, Burns BP, Relman DA, Lowe DR. Molecular identification of cyanobacteria associated with stromatolites from distinct geographical locations. Astrobiology. 2: 271-80. PMID 12530237 DOI: 10.1089/153110702762027853  0.348
2002 Relman DA. New technologies, human-microbe interactions, and the search for previously unrecognized pathogens Journal of Infectious Diseases. 186. PMID 12424706 DOI: 10.1086/344935  0.373
2002 Relman DA. Genome-wide responses of a pathogenic bacterium to its host Journal of Clinical Investigation. 110: 1071-1073. PMID 12393841 DOI: 10.1172/Jci16944  0.375
2002 Cummings CA, Relman DA. Genomics and microbiology. Microbial forensics--"cross-examining pathogens". Science (New York, N.Y.). 296: 1976-9. PMID 12004075 DOI: 10.1126/Science.1073125  0.33
2002 Nikkari S, Lopez FA, Lepp PW, Cieslak PR, Ladd-Wilson S, Passaro D, Danila R, Relman DA. Broad-range bacterial detection and the analysis of unexplained death and critical illness Emerging Infectious Diseases. 8: 188-194. PMID 11897072 DOI: 10.3201/Eid0802.010150  0.343
2002 Nikkari S, Gotoff R, Bourbeau PP, Brown RE, Kamal NR, Relman DA. Identification of Cardiobacterium hominis by broad-range bacterial polymerase chain reaction analysis in a case of culture-negative endocarditis Archives of Internal Medicine. 162: 477-479. PMID 11863484 DOI: 10.1001/Archinte.162.4.477  0.305
2002 Relman DA. The human body as microbial observatory Nature Genetics. 30: 131-133. PMID 11818955 DOI: 10.1038/Ng0202-131  0.378
2002 Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA. Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proceedings of the National Academy of Sciences of the United States of America. 99: 972-7. PMID 11805339 DOI: 10.1073/Pnas.231625398  0.336
2001 Olivier C, Van De Pas S, Lepp PW, Yoder K, Relman DA. Sequence variability in the first internal transcribed spacer region within and among Cyclospora species is consistent with polyparasitism International Journal For Parasitology. 31: 1475-1487. PMID 11595235 DOI: 10.1016/S0020-7519(01)00283-1  0.328
2001 Ishibashi Y, Relman DA, Nishikawa A. Invasion of human respiratory epithelial cells by Bordetella pertussis: Possible role for a filamentous hemagglutinin Arg-Gly-Asp sequence and α5β1 integrin Microbial Pathogenesis. 30: 279-288. PMID 11373122 DOI: 10.1006/Mpat.2001.0432  0.327
2001 Relman DA, Falkow S. The meaning and impact of the human genome sequence for microbiology. Trends in Microbiology. 9: 206-8. PMID 11336835 DOI: 10.1016/S0966-842X(01)02041-8  0.535
2001 Nikkari S, McLaughlin IJ, Bi W, Dodge DE, Relman DA. Does blood of healthy subjects contain bacterial ribosomal DNA? Journal of Clinical Microbiology. 39: 1956-1959. PMID 11326021 DOI: 10.1128/Jcm.39.5.1956-1959.2001  0.3
2001 Fredricks DN, Relman DA. Localization of Tropheryma whippelii rRNA in tissues from patients with Whipple's disease Journal of Infectious Diseases. 183: 1229-1237. PMID 11262205 DOI: 10.1086/319684  0.372
2001 Maiwald M, Von Herbay A, Persing DH, Mitchell PS, Abdelmalek MF, Thorvilson JN, Fredricks DN, Relman DA. Tropheryma whippelii DNA is rare in the intestinal mucosa of patients without other evidence of Whipple disease Annals of Internal Medicine. 134: 115-119. PMID 11177314 DOI: 10.7326/0003-4819-134-2-200101160-00011  0.319
2001 Diehn M, Relman DA. Comparing functional genomic datasets: lessons from DNA microarray analyses of host-pathogen interactions. Current Opinion in Microbiology. 4: 95-101. PMID 11173041 DOI: 10.1016/S1369-5274(00)00171-5  0.378
2001 Maiwald M, Relman DA. Whipple's disease and Tropheryma whippelii: Secrets slowly revealed Clinical Infectious Diseases. 32: 457-463. PMID 11170954 DOI: 10.1086/318512  0.353
2000 Belcher CE, Drenkow J, Kehoe B, Gingeras TR, McNamara N, Lemjabbar H, Basbaum C, Relman DA. The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies Proceedings of the National Academy of Sciences of the United States of America. 97: 13847-13852. PMID 11087813 DOI: 10.1073/Pnas.230262797  0.372
2000 Cummings CA, Relman DA. Using DNA microarrays to study host-microbe interactions. Emerging Infectious Diseases. 6: 513-25. PMID 10998383 DOI: 10.3201/Eid0605.000511  0.389
2000 Tompkins LS, Schachter J, Boman J, Chernesky MA, Dowell S, Gaydos CA, Levison ME, Maass M, Madico G, Orfila J, Ouchi K, Peeling RW, Taylor-Robinson D, Stamm WE, Wang SP, ... ... Relman D, et al. Collaborative multidisciplinary workshop report: detection, culture, serology, and antimicrobial susceptibility testing of Chlamydia pneumoniae. The Journal of Infectious Diseases. 181: S460-1. PMID 10839740 DOI: 10.1086/315599  0.568
2000 Jacob-Dubuisson F, Kehoe B, Willery E, Reveneau N, Locht C, Relman DA. Molecular characterization of Bordetella bronchiseptica filamentous haemagglutinin and its secretion machinery Microbiology. 146: 1211-1221. PMID 10832649 DOI: 10.1099/00221287-146-5-1211  0.316
2000 Fredricks DN, Jolley JA, Lepp PW, Kosek JC, Relman DA. Rhinosporidium seeberi: a human pathogen from a novel group of aquatic protistan parasites. Emerging Infectious Diseases. 6: 273-82. PMID 10827117 DOI: 10.3201/Eid0603.000307  0.314
2000 Maiwald M, Von Herbay A, Lepp PW, Relman DA. Organization, structure, and variability of the rRNA operon of the Whipple's disease bacterium (Tropheryma whippelii) Journal of Bacteriology. 182: 3292-3297. PMID 10809715 DOI: 10.1128/Jb.182.11.3292-3297.2000  0.336
2000 Manger ID, Relman DA. How the host 'sees' pathogens: Global gene expression responses to infection Current Opinion in Immunology. 12: 215-218. PMID 10712949 DOI: 10.1016/S0952-7915(99)00077-1  0.376
1999 Kroes I, Lepp PW, Relman DA. Bacterial diversity within the human subgingival crevice Proceedings of the National Academy of Sciences of the United States of America. 96: 14547-14552. PMID 10588742 DOI: 10.1073/Pnas.96.25.14547  0.351
1999 Relman DA. The search for unrecognized pathogens Science. 284: 1308-1310. PMID 10334977 DOI: 10.1126/Science.284.5418.1308  0.405
1999 Lopez FA, Manglicmot J, Schmidt TM, Yeh C, Smith HV, Relman DA. Molecular characterization of Cyclospora-like organisms from baboons. The Journal of Infectious Diseases. 179: 670-6. PMID 9952374 DOI: 10.1086/314645  0.377
1999 Nikkari S, Relman DA. Molecular approaches for identification of infectious agents in Wegener's granulomatosis and other vasculitides Current Opinion in Rheumatology. 11: 11-16. PMID 9894625 DOI: 10.1097/00002281-199901000-00003  0.362
1998 Cotter PA, Yuk MH, Mattoo S, Akerley BJ, Boschwitz J, Relman DA, Miller JF. Filamentous hemagglutinin of Bordetella bronchiseptica is required for efficient establishment of tracheal colonization. Infection and Immunity. 66: 5921-9. PMID 9826374 DOI: 10.1128/Iai.66.12.5921-5929.1998  0.312
1998 Petrides PE, Müller-Höcker J, Fredricks DN, Relman DA. PCR analysis of T. whippelii DNA in a case of Whipple's disease: Effect of antibiotics and correlation with histology American Journal of Gastroenterology. 93: 1579-1582. PMID 9732952 DOI: 10.1111/J.1572-0241.1998.00416.X  0.305
1998 Relman DA. The 'emergence' of Bartonella and the development of molecular discovery methods for microbial pathogens Netherlands Journal of Medicine. 52: 249-255. PMID 9718924 DOI: 10.1016/S0300-2977(98)00039-4  0.32
1998 Relman DA. Detection and identification of previously unrecognized microbial pathogens Emerging Infectious Diseases. 4: 382-389. PMID 9716951 DOI: 10.3201/Eid0403.980310  0.43
1997 Relman DA. Editorial: The whipple bacillus lives (Ex Vivo)! Journal of Infectious Diseases. 176: 752-754. PMID 9291325 DOI: 10.1086/514100  0.445
1997 Boschwitz JS, Batanghari JW, Kedem H, Relman DA. Bordetella pertussis infection of human monocytes inhibits antigen- dependent CD4 T cell proliferation Journal of Infectious Diseases. 176: 678-686. PMID 9291315 DOI: 10.1086/514090  0.315
1997 Relman DA. Emerging infections and newly-recognised pathogens Netherlands Journal of Medicine. 50: 216-220. PMID 9175403 DOI: 10.1016/S0300-2977(97)00016-8  0.39
1996 Santamaría-Fríes M, Fajardo L-G LF, Sogin ML, Olson PD, Relman DA. Lethal infection by a previously unrecognised metazoan parasite Lancet. 347: 1797-1801. PMID 8667924 DOI: 10.1016/S0140-6736(96)91618-9  0.317
1996 Relman DA, Schmidt TM, Gajadhar A, Sogin M, Cross J, Yoder K, Sethabutr O, Echeverria P. Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species. The Journal of Infectious Diseases. 173: 440-5. PMID 8568307 DOI: 10.1093/Infdis/173.2.440  0.387
1996 Fredericks DN, Relman DA. Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates. Clinical Microbiology Reviews. 9: 18-33. DOI: 10.1128/Cmr.9.1.18  0.386
1995 Rowley AH, Wolinsky SM, Relman DA, Sambol SP, Sullivan J, Terai M, Shulman ST. Search for highly conserved viral and bacterial nucleic acid sequences corresponding to an etiologic agent of Kawasaki disease. Pediatric Research. 36: 567-71. PMID 7877872 DOI: 10.1203/00006450-199411000-00003  0.321
1995 Relman DA. Has trench fever returned? The New England Journal of Medicine. 332: 463-4. PMID 7529896 DOI: 10.1056/Nejm199502163320710  0.302
1994 Hamed KA, Dormitzer PR, Su CK, Relman DA. Haemophilus parainfluenzae endocarditis: application of a molecular approach for identification of pathogenic bacterial species. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 19: 677-83. PMID 7528552 DOI: 10.1093/Clinids/19.4.677  0.38
1992 Relman DA, Lepp PW, Sadler KN, Schmidt TM. Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria. Molecular Microbiology. 6: 1801-7. PMID 1378524 DOI: 10.1111/J.1365-2958.1992.Tb01352.X  0.326
1992 Relman DA, Schmidt TM, MacDermott RP, Falkow S. Identification of the uncultured bacillus of Whipple's disease. The New England Journal of Medicine. 327: 293-301. PMID 1377787 DOI: 10.1056/Nejm199207303270501  0.477
1991 Relman DA, Falkow S, LeBoit PE, Perkocha LA, Min KW, Welch DF, Slater LN. The organism causing bacillary angiomatosis, peliosis hepatis, and fever and bacteremia in immunocompromised patients. The New England Journal of Medicine. 324: 1514. PMID 2023615 DOI: 10.1056/Nejm199105233242117  0.446
1991 Relman D. A review of Lyme disease serologic diagnosis Journal of Wilderness Medicine. 2: 313-329. DOI: 10.1580/0953-9859-2.4.313  0.319
1990 Domenighini M, Relman D, Capiau C, Falkow S, Prugnola A, Scarlato V, Rappuoli R. Genetic characterization of Bordetella pertussis filamentous haemagglutinin: a protein processed from an unusually large precursor. Molecular Microbiology. 4: 787-800. PMID 2388559 DOI: 10.1111/J.1365-2958.1990.Tb00649.X  0.481
1990 Relman D, Tuomanen E, Falkow S, Golenbock DT, Saukkonen K, Wright SD. Recognition of a bacterial adhesion by an integrin: macrophage CR3 (alpha M beta 2, CD11b/CD18) binds filamentous hemagglutinin of Bordetella pertussis. Cell. 61: 1375-82. PMID 2364431 DOI: 10.1016/0092-8674(90)90701-F  0.495
1990 Kimura A, Mountzouros KT, Relman DA, Falkow S, Cowell JL. Bordetella pertussis filamentous hemagglutinin: evaluation as a protective antigen and colonization factor in a mouse respiratory infection model. Infection and Immunity. 58: 7-16. PMID 2294058 DOI: 10.1128/Iai.58.1.7-16.1990  0.481
1990 Relman DA, Loutit JS, Schmidt TM, Falkow S, Tompkins LS. The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens. The New England Journal of Medicine. 323: 1573-80. PMID 2233945 DOI: 10.1056/Nejm199012063232301  0.682
1989 Relman DA, Domenighini M, Tuomanen E, Rappuoli R, Falkow S. Filamentous hemagglutinin of Bordetella pertussis: nucleotide sequence and crucial role in adherence. Proceedings of the National Academy of Sciences of the United States of America. 86: 2637-41. PMID 2539596 DOI: 10.1073/Pnas.86.8.2637  0.498
Low-probability matches (unlikely to be authored by this person)
2010 Casadevall A, Relman DA. Microbial threat lists: obstacles in the quest for biosecurity? Nature Reviews. Microbiology. 8: 149-54. PMID 20065941 DOI: 10.1038/Nrmicro2299  0.3
2019 Relman DA. Maternal IgA: Matchmaking in Early Childhood. Immunity. 51: 211-213. PMID 31433968 DOI: 10.1016/J.Immuni.2019.07.010  0.3
2018 Relman D. The human microbiome International Journal of Infectious Diseases. 73: 70. DOI: 10.1016/J.Ijid.2018.04.3584  0.3
2017 Relman DA. Microbiota: A high-pressure situation for bacteria. Nature. PMID 29143820 DOI: 10.1038/Nature24760  0.299
1997 Lynch T, Odel J, Fredericks DN, Louis ED, Forman S, Rotterdam H, Fahn S, Relman DA. Polymerase chain reaction-based detection of Tropheryma whippelii in central nervous system Whipple's disease. Annals of Neurology. 42: 120-4. PMID 9225695 DOI: 10.1002/Ana.410420120  0.298
2017 Cheng H, Strouts F, Sweeney TE, Briese T, Jeganathan P, Khadka V, Thair S, Popper S, Dalai S, Tan S, Hitchcock M, Multani A, Campen N, Yang S, Holmes SP, ... ... Relman DA, et al. Integration of Next–Generation Sequencing, Viral Sequencing, and Host-Response Profiling for the Diagnosis of Acute Infections Open Forum Infectious Diseases. 4: S71-S71. DOI: 10.1093/Ofid/Ofx162.170  0.298
2011 Brickman TJ, Cummings CA, Liew SY, Relman DA, Armstrong SK. Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression. Journal of Bacteriology. 193: 4798-812. PMID 21742863 DOI: 10.1128/Jb.05136-11  0.297
2001 Abramson T, Kedem H, Relman DA. Proinflammatory and proapoptotic activities associated with Bordetella pertussis filamentous hemagglutinin Infection and Immunity. 69: 2650-2658. PMID 11254631 DOI: 10.1128/Iai.69.4.2650-2658.2001  0.297
2004 Shumilla JA, Lacaille V, Hornell TM, Huang J, Narasimhan S, Relman DA, Mellins ED. Bordetella pertussis infection of primary human monocytes alters HLA-DR expression. Infection and Immunity. 72: 1450-62. PMID 14977950 DOI: 10.1128/Iai.72.3.1450-1462.2004  0.295
2012 Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, ... ... Relman DA, et al. Public health and biosecurity. Adaptations of avian flu virus are a cause for concern. Science (New York, N.Y.). 335: 660-1. PMID 22294736 DOI: 10.1126/Science.1217994  0.294
2013 Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U. Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. Plos One. 8: e53838. PMID 23349750 DOI: 10.1371/Journal.Pone.0053838  0.293
1995 Rickman LS, Freeman WR, Green WR, Feldman ST, Sullivan J, Russack V, Relman DA. Brief report: uveitis caused by Tropheryma whippelii (Whipple's bacillus) The New England Journal of Medicine. 332: 363-6. PMID 7529892 DOI: 10.1056/Nejm199502093320604  0.293
1994 Ishibashi Y, Claus S, Relman DA. Bordetella pertussis filamentous hemagglutinin interacts with a leukocyte signal transduction complex and stimulates bacterial adherence to monocyte CR3 (CD11b/CD18). The Journal of Experimental Medicine. 180: 1225-33. PMID 7931059 DOI: 10.1084/Jem.180.4.1225  0.292
2002 Ishibashi Y, Yoshimura K, Nishikawa A, Claus S, Laudanna C, Relman DA. Role of phosphatidylinositol 3-kinase in the binding of Bordetella pertussis to human monocytes Cellular Microbiology. 4: 825-833. PMID 12464013 DOI: 10.1046/J.1462-5822.2002.00235.X  0.292
2008 Relman DA. 'Til death do us part': coming to terms with symbiotic relationships. Forward. Nature Reviews. Microbiology. 6: 721-4. PMID 19086265 DOI: 10.1038/Nrmicro1990  0.291
2002 Relman DA. Mining the natural world for new pathogens American Journal of Tropical Medicine and Hygiene. 67: 133-134. PMID 12389934 DOI: 10.4269/Ajtmh.2002.67.133  0.291
1994 Schmidt TM, Relman DA. Phylogenetic identification of uncultured pathogens using ribosomal RNA sequences. Methods in Enzymology. 235: 205-22. PMID 7520119 DOI: 10.1016/0076-6879(94)35142-2  0.289
1997 Ramzan NN, Loftus E, Burgart LJ, Rooney M, Batts KP, Wiesner RH, Fredricks DN, Relman DA, Persing DH. Diagnosis and monitoring of Whipple disease by polymerase chain reaction Annals of Internal Medicine. 126: 520-527. PMID 9092317 DOI: 10.7326/0003-4819-126-7-199704010-00004  0.288
1998 Perkins BA, Relman D. Explaining the unexplained in clinical infectious diseases: Looking forward Emerging Infectious Diseases. 4: 395-397. PMID 9716953 DOI: 10.3201/Eid0403.980312  0.287
2017 Tan SK, Relman DA, Pinsky BA. The Human Virome - Implications for Clinical Practice in Transplantation Medicine. Journal of Clinical Microbiology. PMID 28724557 DOI: 10.1128/Jcm.00489-17  0.286
2017 Callahan BJ, DiGiulio DB, Goltsman DSA, Sun CL, Costello EK, Jeganathan P, Biggio JR, Wong RJ, Druzin ML, Shaw GM, Stevenson DK, Holmes SP, Relman DA. Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women. Proceedings of the National Academy of Sciences of the United States of America. PMID 28847941 DOI: 10.1073/Pnas.1705899114  0.286
1997 Boschwitz JS, Van der Heide HGJ, Mooi FR, Relman DA. Bordetella bronchiseptica expresses the fimbrial structural subunit gene fimA Journal of Bacteriology. 179: 7882-7885. PMID 9401052 DOI: 10.1128/Jb.179.24.7882-7885.1997  0.284
2013 Gordon J, Knowlton N, Relman DA, Rohwer F, Youle M. Superorganisms and holobionts Microbe. 8: 152-153. DOI: 10.1128/Microbe.8.152.1  0.284
2013 Teles RM, Graeber TG, Krutzik SR, Montoya D, Schenk M, Lee DJ, Komisopoulou E, Kelly-Scumpia K, Chun R, Iyer SS, Sarno EN, Rea TH, Hewison M, Adams JS, Popper SJ, ... Relman DA, et al. Type I interferon suppresses type II interferon-triggered human anti-mycobacterial responses. Science (New York, N.Y.). 339: 1448-53. PMID 23449998 DOI: 10.1126/Science.1233665  0.283
1998 Taskén K, Schulz T, Elgjo K, Skullerud K, Relman D, Brubakk O. Diagnostic Utility of the Polymerase Chain Reaction in 2 Cases of Suspected Whipple Disease Jama Internal Medicine. 158: 801-803. PMID 9554687 DOI: 10.1001/Archinte.158.7.801  0.283
2002 Fredricks DN, Martin TM, Edwards AO, Rosenbaum JT, Relman DA. Human herpesvirus 8 and sarcoidosis [4] Clinical Infectious Diseases. 34: 559-560. PMID 11797191 DOI: 10.1086/338406  0.283
2015 DiGiulio DB, Stevenson DK, Shaw G, Lyell DJ, Relman DA. Reply to Keelan and Payne: Microbiota-related pathways for preterm birth. Proceedings of the National Academy of Sciences of the United States of America. PMID 26515091 DOI: 10.1073/Pnas.1517939112  0.282
2006 Fredricks DN, Relman DA. The infectious aetiology of disease: the search for new agents. Medicine (Abingdon, England : Uk Ed.). 33: 37-38. PMID 32288563 DOI: 10.1383/medc.33.3.37.61122  0.282
2017 Hemingway C, Berk M, Anderson ST, Wright VJ, Hamilton S, Eleftherohorinou H, Kaforou M, Goldgof GM, Hickman K, Kampmann B, Schoeman J, Eley B, Beatty D, Pienaar S, Nicol MP, ... ... Relman DA, et al. Childhood tuberculosis is associated with decreased abundance of T cell gene transcripts and impaired T cell function. Plos One. 12: e0185973. PMID 29140996 DOI: 10.1371/Journal.Pone.0185973  0.281
2007 Long CD, Turner-Shelef K, Relman DA. Building a better virus trap. Trends in Biotechnology. 25: 535-8. PMID 17997180 DOI: 10.1016/J.Tibtech.2007.08.013  0.28
1999 Fredricks DN, Relman DA. Application of polymerase chain reaction to the diagnosis of infectious diseases Clinical Infectious Diseases. 29: 475-488. PMID 10530433 DOI: 10.1086/598618  0.28
2014 Ravel J, Blaser MJ, Braun J, Brown E, Bushman FD, Chang EB, Davies J, Dewey KG, Dinan T, Dominguez-Bello M, Erdman SE, Finlay BB, Garrett WS, Huffnagle GB, Huttenhower C, ... ... Relman DA, et al. Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 Microbiome. 2. DOI: 10.1186/2049-2618-2-16  0.276
1999 Relman DA, Fredricks DN, Yoder KE, Mirowski G, Berger T, Koehler JE. Absence of Kaposi's sarcoma-associated herpesvirus DNA in bacillary angiomatosis-peliosis lesions Journal of Infectious Diseases. 180: 1386-1389. PMID 10479179 DOI: 10.1086/314975  0.276
2016 Strouts FR, Popper SJ, Partidos CD, Stinchcomb DT, Osorio JE, Relman DA. Early Transcriptional Signatures of the Immune Response to a Live Attenuated Tetravalent Dengue Vaccine Candidate in Non-human Primates. Plos Neglected Tropical Diseases. 10: e0004731. PMID 27214236 DOI: 10.1371/Journal.Pntd.0004731  0.275
1998 Fredricks DN, Relman DA. Improved amplification of microbial DNA from blood cultures by removal of the PCR inhibitor sodium polyanetholesulfonate Journal of Clinical Microbiology. 36: 2810-2816. PMID 9738025 DOI: 10.1128/Jcm.36.10.2810-2816.1998  0.275
2018 Stevenson DK, Wong RJ, Aghaeepour N, Angst MS, Darmstadt GL, DiGiulio DB, Druzin ML, Gaudilliere B, Gibbs RS, B Gould J, Katz M, Li J, Moufarrej MN, Quaintance CC, Quake SR, ... Relman DA, et al. Understanding health disparities. Journal of Perinatology : Official Journal of the California Perinatal Association. PMID 30560947 DOI: 10.1038/S41372-018-0298-1  0.273
1998 Stark P, Relman DA, Santamaria-Fries M, Fajardo LF. Radiologic features of a fatal platyhelminth (tapeworm) infection in an AIDS patient. Ajr. American Journal of Roentgenology. 170: 136-8. PMID 9423618 DOI: 10.2214/Ajr.170.1.9423618  0.273
2009 Dinalo JE, Relman DA. Cross-talk in the gut. Genome Biology. 10: 203. PMID 19216729 DOI: 10.1186/Gb-2009-10-1-203  0.273
2018 Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Relman DA, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X  0.272
2008 Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML. Correction: Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing Plos Genetics. 4. DOI: 10.1371/Annotation/3D8A6578-Ce56-45Aa-Bc71-05078355B851  0.271
2006 Relman DA, Choffnes E, Lemon SM. In search of biosecurity. Science (New York, N.Y.). 311: 1835. PMID 16574824 DOI: 10.1126/Science.1127725  0.27
2014 Maiwald M, Relman DA. Whipple's disease Infections of the Central Nervous System: Fourth Edition. DOI: 10.1016/0753-3322(93)90307-7  0.268
1997 Lofez FA, Manglicmot J, Yeh C, Smith H, Relman DA. Molecular characterization of baboon-associated Cyclospora-like oocysts Clinical Infectious Diseases. 25: 428.  0.268
2008 Abramson T, Kedem H, Relman DA. Modulation of the NF-kappaB pathway by Bordetella pertussis filamentous hemagglutinin. Plos One. 3: e3825. PMID 19043589 DOI: 10.1371/Journal.Pone.0003825  0.267
2015 Duprex WP, Fouchier RA, Imperiale MJ, Lipsitch M, Relman DA. Gain-of-function experiments: time for a real debate. Nature Reviews. Microbiology. 13: 58-64. PMID 25482289 DOI: 10.1038/Nrmicro3405  0.267
2012 Osterholm MT, Relman DA. Creating a mammalian-transmissible A/H5N1 influenza virus: social contracts, prudence, and alternative perspectives. The Journal of Infectious Diseases. 205: 1636-8. PMID 22454472 DOI: 10.1093/Infdis/Jis259  0.267
2012 Relman DA. Have We “Met the Enemy”? Science. 335: 540-541. DOI: 10.1126/Science.1213942  0.266
1997 Fredricks DN, Relman DA. Cultivation of Whipple bacillus: The irony and the ecstasy Lancet. 350: 1262-1263. PMID 9357400 DOI: 10.1016/S0140-6736(97)22044-1  0.265
2013 Diaz MA, Bik EM, Carlin KP, Venn-Watson SK, Jensen ED, Jones SE, Gaston EP, Relman DA, Versalovic J. Identification of Lactobacillus strains with probiotic features from the bottlenose dolphin (Tursiops truncatus). Journal of Applied Microbiology. 115: 1037-51. PMID 23855505 DOI: 10.1111/Jam.12305  0.265
2009 DiGiulio DB, Relman DA. Majority rules? Tallying the microbial census in an abscess by means of molecular methods. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 48: 1179-81. PMID 19335163 DOI: 10.1086/597579  0.265
1996 Marth T, Fredricks D, Strober W, Relman DA. Limited role for PCR-based diagnosis of Whipple's disease from peripheral blood mononuclear cells [18] Lancet. 348: 66-67. PMID 8691962 DOI: 10.1016/S0140-6736(05)64400-5  0.264
2015 Frank GM, Adalja A, Barbour A, Casadevall A, Dormitzer PR, Duchin J, Hayden FG, Hirsch MS, Hynes NA, Lipsitch M, Pavia AT, Relman DA. IDSA and Gain-of-Function Experiments with Pathogens having Pandemic Potential1. The Journal of Infectious Diseases. PMID 26416656 DOI: 10.1093/Infdis/Jiv474  0.261
2012 Relman DA. Presumed guilt in the anthrax case - Response Science. 336: 669-670. DOI: 10.1126/Science.336.6082.669-B  0.259
2015 Relman DA. The Human Microbiome and the Future Practice of Medicine. Jama. 314: 1127-8. PMID 26372576 DOI: 10.1001/Jama.2015.10700  0.259
2003 Petro JB, Relman DA. Understanding Threats to Scientific Openness Science. 302: 1898. PMID 14671279 DOI: 10.1126/Science.1092493  0.258
2010 DiGiulio DB, Gervasi MT, Romero R, Vaisbuch E, Mazaki-Tovi S, Kusanovic JP, Seok KS, Gómez R, Mittal P, Gotsch F, Chaiworapongsa T, Oyarzún E, Kim CJ, Relman DA. Microbial invasion of the amniotic cavity in pregnancies with small-for-gestational-age fetuses. Journal of Perinatal Medicine. 38: 495-502. PMID 20482466 DOI: 10.1515/Jpm.2010.076  0.258
2014 Martens EC, Sonnenburg JL, Relman DA. Editorial overview: insights into molecular mechanisms of microbiota. Journal of Molecular Biology. 426: 3827-9. PMID 25218944 DOI: 10.1016/J.Jmb.2014.08.021  0.255
2020 Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, et al. Multiomic immune clockworks of pregnancy. Seminars in Immunopathology. PMID 32020337 DOI: 10.1007/S00281-019-00772-1  0.25
2023 Xue KS, Walton SJ, Goldman DA, Morrison ML, Verster AJ, Parrott AB, Yu FB, Neff N, Rosenberg NA, Ross BD, Petrov D, Huang KC, Good BH, Relman D. Prolonged delays in human microbiota transmission after a controlled antibiotic perturbation. Biorxiv : the Preprint Server For Biology. PMID 37808827 DOI: 10.1101/2023.09.26.559480  0.248
2011 Relman DA. Pox: An American history Journal of Clinical Investigation. 121: 4571-4571. DOI: 10.1172/Jci58495  0.247
2019 Ghaemi MS, DiGiulio DB, Contrepois K, Callahan B, Ngo TTM, Lee-McMullen B, Lehallier B, Robaczewska A, Mcilwain D, Rosenberg-Hasson Y, Wong RJ, Quaintance C, Culos A, Stanley N, Tanada A, ... ... Relman DA, et al. Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinformatics (Oxford, England). 35: 95-103. PMID 30561547 DOI: 10.1093/Bioinformatics/Bty537  0.246
2005 Kampmann B, Hemingway C, Stephens A, Davidson R, Goodsall A, Anderson S, Nicol M, Schölvinck E, Relman D, Waddell S, Langford P, Sheehan B, Semple L, Wilkinson KA, Wilkinson RJ, et al. Acquired predisposition to mycobacterial disease due to autoantibodies to IFN-gamma. The Journal of Clinical Investigation. 115: 2480-8. PMID 16127458 DOI: 10.1172/Jci19316  0.246
1996 Relman DA. Advances in the diagnosis of uveitis Investigative Ophthalmology and Visual Science. 37.  0.246
2002 LeDuc JW, Damon I, Meegan JM, Relman DA, Huggins J, Jahrling PB. Smallpox research activities: U.S. interagency collaboration, 2001 Emerging Infectious Diseases. 8: 743-745. PMID 12095449 DOI: 10.3201/Eid0807.020032  0.245
2023 Dudek NK, Galaz-Montoya JG, Shi H, Mayer M, Danita C, Celis AI, Viehboeck T, Wu GH, Behr B, Bulgheresi S, Huang KC, Chiu W, Relman DA. Previously uncharacterized rectangular bacterial structures in the dolphin mouth. Nature Communications. 14: 2098. PMID 37055390 DOI: 10.1038/s41467-023-37638-y  0.245
1998 Baorto E, Payne RM, Slater LN, Lopez F, Relman DA, Min KW, St. Geme JW. Culture-negative endocarditis caused by Bartonella henselae Journal of Pediatrics. 132: 1051-1054. PMID 9627605 DOI: 10.1016/S0022-3476(98)70410-X  0.244
2014 Relman DA. Biological engineering, risk, and uncertainty. The Hastings Center Report. 44: S36-7. PMID 25418702 DOI: 10.1002/Hast.397  0.244
2023 Shalon D, Culver RN, Grembi JA, Folz J, Treit PV, Shi H, Rosenberger FA, Dethlefsen L, Meng X, Yaffe E, Aranda-Díaz A, Geyer PE, Mueller-Reif JB, Spencer S, Patterson AD, ... ... Relman DA, et al. Profiling the human intestinal environment under physiological conditions. Nature. PMID 37165188 DOI: 10.1038/s41586-023-05989-7  0.244
2023 Switzer AD, Callahan BJ, Costello EK, Bik EM, Fontaine C, Gulland FMD, Relman DA. Rookery through rehabilitation: Microbial community assembly in newborn harbour seals after maternal separation. Environmental Microbiology. PMID 37329141 DOI: 10.1111/1462-2920.16444  0.241
2011 Shimizu C, Jain S, Hibberd ML, Lin KO, Molkara D, Frazer JR, Sun S, Baker AL, Newburger JW, Rowley AH, Shulman ST, Davila S, Burgner D, Breunis WB, Kuijpers TW, ... ... Relman DA, et al. Transforming growth factor-β signaling pathway in patients with Kawasaki disease Circulation: Cardiovascular Genetics. 4: 16-25. PMID 21127203 DOI: 10.1161/Circgenetics.110.940858  0.241
2013 Relman DA. The increasingly compelling moral responsibilities of life scientists. The Hastings Center Report. 43: 34-5. PMID 23494700 DOI: 10.1002/Hast.156  0.24
2018 Alsan M, Kammili N, Lakshmi J, Xing A, Khan A, Rani M, Kolli P, Relman DA, Owens DK. Poverty and Community-Acquired Antimicrobial Resistance with Extended-Spectrum β-Lactamase-Producing Organisms, Hyderabad, India. Emerging Infectious Diseases. 24: 1490-1496. PMID 30014842 DOI: 10.3201/Eid2408.171030  0.24
1998 Soave R, Herwaldt BL, Relman DA. Cyclospora Infectious Disease Clinics of North America. 12: 1-12. PMID 9494825 DOI: 10.1016/S0891-5520(05)70404-9  0.238
2011 Shimizu C, Jain S, Davila S, Hibberd ML, Lin KO, Molkara D, Frazer JR, Sun S, Baker AL, Newburger JW, Rowley AH, Shulman ST, Burgner D, Breunis WB, Kuijpers TW, ... ... Relman DA, et al. Erratum: Transforming growth factor-β signaling pathway in patients with Kawasaki disease (Circulation: Cardiovascular Genetics (2011) 4 (16-25)) Circulation-Cardiovascular Genetics. 4. DOI: 10.1161/Hcg.0B013E31821Bbda9  0.238
2010 DiGiulio DB, Romero R, Kusanovic JP, Gómez R, Kim CJ, Seok KS, Gotsch F, Mazaki-Tovi S, Vaisbuch E, Sanders K, Bik EM, Chaiworapongsa T, Oyarzún E, Relman DA. Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes. American Journal of Reproductive Immunology (New York, N.Y. : 1989). 64: 38-57. PMID 20331587 DOI: 10.1111/J.1600-0897.2010.00830.X  0.236
2017 Fischer N, Relman DA. C. difficile, aging and the gut: can microbiome rejuvenation keep us young and healthy? The Journal of Infectious Diseases. PMID 28968708 DOI: 10.1093/Infdis/Jix417  0.233
2020 Celis A, Relman D. Unraveling the Role of the Gut Microbiome in Iron‐Deficiency Anemia During Pregnancy The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.07369  0.232
2018 Popper SJ, Strouts FR, Lindow JC, Cheng HK, Montoya M, Balmaseda A, Durbin AP, Whitehead SS, Harris E, Kirkpatrick BD, Relman DA. Early transcriptional responses after dengue vaccination mirror the response to natural infection and predict neutralizing antibody titers. The Journal of Infectious Diseases. PMID 30010906 DOI: 10.1093/Infdis/Jiy434  0.232
1998 Relman DA. Are all Bartonella henselae strains created equal? Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 26: 1300-1301. PMID 9636851 DOI: 10.1086/516347  0.231
2002 Olivier C, van de Pas S, Lepp P, Yoder K, Relman D. Corrigendum to “Sequence variability in the first internal transcribed spacer region within and among Cyclospora species is consistent with polyparasitism” [Int. J. Parasitol. 31 (2001) 1475–1487] International Journal For Parasitology. 32: 489. DOI: 10.1016/S0020-7519(02)00017-6  0.229
2021 Blaser MJ, Devkota S, McCoy KD, Relman DA, Yassour M, Young VB. Lessons learned from the prenatal microbiome controversy. Microbiome. 9: 8. PMID 33436098 DOI: 10.1186/s40168-020-00946-2  0.224
2014 Casadevall A, Enquist L, Imperiale MJ, Keim P, Osterholm MT, Relman DA. Redaction of sensitive data in the publication of dual use research of concern. Mbio. 5: e00991-13. PMID 24381302 DOI: 10.1128/Mbio.00991-13  0.224
1991 Birtles RJ, Harrison TG, Taylor AG, Relman DA, Schmidt TM, Cockerell CJ, Tierno PM, Friedman-Kien AE, Kim KS. The causative agent of bacillary angiomatosis [4] New England Journal of Medicine. 325: 1447-1448. PMID 1922261 DOI: 10.1056/Nejm199111143252014  0.223
2012 Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, ... ... Relman DA, et al. Policy: Adaptations of avian flu virus are a cause for concern. Nature. 482: 153-4. PMID 22294204 DOI: 10.1038/482153A  0.222
2022 Celis AI, Aranda-Díaz A, Culver R, Xue K, Relman D, Shi H, Huang KC. Optimization of the 16S rRNA sequencing analysis pipeline for studying communities of gut commensals. Iscience. 25: 103907. PMID 35340431 DOI: 10.1016/j.isci.2022.103907  0.222
2006 Choffnes ER, Lemon SM, Relman DA. A brave new world in the life sciences Bulletin of the Atomic Scientists. 62. DOI: 10.2968/062005009  0.221
2006 Relman DA. Bioterrorism--preparing to fight the next war. The New England Journal of Medicine. 354: 113-5. PMID 16407505 DOI: 10.1056/Nejmp058078  0.22
2022 Dudek NK, Switzer AD, Costello EK, Murray MJ, Tomoleoni JA, Staedler MM, Tinker MT, Relman DA. Characterizing the oral and distal gut microbiota of the threatened southern sea otter () to enhance conservation practice. Conservation Science and Practice. 4. PMID 35382031 DOI: 10.1111/csp2.12640  0.219
2005 Diaz LS, Foster H, Stone MR, Fujimura S, Relman DA, Levy JA. VCAM-1 expression on CD8+ cells correlates with enhanced anti-HIV suppressing activity. Journal of Immunology (Baltimore, Md. : 1950). 174: 1574-9. PMID 15661918 DOI: 10.4049/Jimmunol.174.3.1574  0.217
2007 Dethlefsen L, Relman DA. The importance of individuals and scale: moving towards single cell microbiology. Environmental Microbiology. 9: 8-10. PMID 17227405 DOI: 10.1111/J.1462-2920.2006.01222_8.X  0.215
2023 Folz J, Culver RN, Morales JM, Grembi J, Triadafilopoulos G, Relman DA, Huang KC, Shalon D, Fiehn O. Human metabolome variation along the upper intestinal tract. Nature Metabolism. PMID 37165176 DOI: 10.1038/s42255-023-00777-z  0.214
1999 Fredricks DN, Relman DA. Paraffin removal from tissue sections for digestion and PCR analysis Biotechniques. 26: 198-200. PMID 10023524 DOI: 10.2144/99262Bm04  0.212
2007 Abramson T, Relman D, Kedem H. Differential NF-kappaB Responses Induced by Bordetella Pertussis Filamentous-Hemagglutinin (FHA) in Macrophages and Bronchial Epithelial Cells Clinical Immunology. 123: S37. DOI: 10.1016/J.Clim.2007.03.282  0.211
2010 Cho MK, Relman DA. Genetic technologies. Synthetic "life," ethics, national security, and public discourse. Science (New York, N.Y.). 329: 38-9. PMID 20595601 DOI: 10.1126/Science.1193749  0.211
1973 Asakura T, Agarwal PL, Relman DA, McCray JA, Chance B, Schwartz E, Friedman S, Lubin B. Mechanical instability of the oxy-form of sickle haemoglobin. Nature. 244: 437-8. PMID 4582496 DOI: 10.1038/244437A0  0.209
2012 Fukuyama J, McMurdie P, Dethlefsen L, Relman D, Holmes SP. UniFrac and double principal coordinates analysis F1000research. 3. DOI: 10.7490/F1000Research.1089813.1  0.209
2020 France MT, Rutt L, Narina S, Arbaugh S, McComb E, Humphrys MS, Ma B, Hayward MR, Costello EK, Relman DA, Kwon DS, Ravel J. Complete Genome Sequences of Six Lactobacillus iners Strains Isolated from the Human Vagina. Microbiology Resource Announcements. 9. PMID 32409537 DOI: 10.1128/MRA.00234-20  0.208
2022 Shalon N, Relman DA, Yaffe E. Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors. Genome Research. 32: 986-1003. PMID 35414589 DOI: 10.1101/gr.275894.121  0.205
1998 Relman DA, Wright A. Techniques Molecular and cellular microbiology: new tools of the trade Current Opinion in Microbiology. 1: 337-339. PMID 10066502 DOI: 10.1016/S1369-5274(98)80038-6  0.204
2011 Pathan N, Franklin JL, Eleftherohorinou H, Wright VJ, Hemingway CA, Waddell SJ, Griffiths M, Dennis JL, Relman DA, Harding SE, Levin M. Myocardial depressant effects of interleukin 6 in meningococcal sepsis are regulated by p38 mitogen-activated protein kinase. Critical Care Medicine. 39: 1692-711. PMID 21494108 DOI: 10.1097/Ccm.0B013E3182186D27  0.202
2004 Pathan N, Hemingway CA, Alizadeh AA, Stephens AC, Boldrick JC, Oragui EE, McCabe C, Welch SB, Whitney A, O'Gara P, Nadel S, Relman DA, Harding SE, Levin M. Role of interleukin 6 in myocardial dysfunction of meningococcal septic shock. Lancet (London, England). 363: 203-9. PMID 14738793 DOI: 10.1016/S0140-6736(03)15326-3  0.202
2003 Rubins K, Relman DA. Progression of the lesion at the site of inoculation after smallpox vaccination New England Journal of Medicine. 348: 414. PMID 12556544 DOI: 10.1056/Nejmicm020924  0.199
2020 Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, ... ... Relman DA, et al. Towards personalized medicine in maternal and child health: integrating biologic and social determinants. Pediatric Research. PMID 32454518 DOI: 10.1038/S41390-020-0981-8  0.198
2010 Relman DA. The biological century: coming to terms with risk in the life sciences. Nature Immunology. 11: 275-8. PMID 20300132 DOI: 10.1038/Ni0410-275  0.198
2015 Palmer MJ, Fukuyama F, Relman DA. A more systematic approach to biological risk:Management of emerging risks in life science and technology requires new leadership and a sober assessment of the legacy of Asilomar Science. 350: 1471-1473. PMID 26680180 DOI: 10.1126/Science.Aad8849  0.196
2022 Rao AM, Popper SJ, Gupta S, Davong V, Vaidya K, Chanthongthip A, Dittrich S, Robinson MT, Vongsouvath M, Mayxay M, Nawtaisong P, Karmacharya B, Thair SA, Bogoch I, Sweeney TE, ... ... Relman DA, et al. A robust host-response-based signature distinguishes bacterial and viral infections across diverse global populations. Cell Reports. Medicine. 3: 100842. PMID 36543117 DOI: 10.1016/j.xcrm.2022.100842  0.195
2017 Palmer MJ, Tiu BC, Weissenbach AS, Relman DA. On Defining Global Catastrophic Biological Risks. Health Security. PMID 28737976 DOI: 10.1089/Hs.2017.0057  0.193
2014 Babcock HM, Jernigan JA, Relman DA. The importance of influenza vaccination. Jama Internal Medicine. 174: 644-5. PMID 24711193 DOI: 10.1001/Jamainternmed.2013.11174  0.189
2014 Relman DA. "Inconvenient truths" in the pursuit of scientific knowledge and public health. The Journal of Infectious Diseases. 209: 170-2. PMID 24106297 DOI: 10.1093/Infdis/Jit529  0.188
2022 Smith CJ, Dethlefsen L, Gardner C, Nguyen L, Feldman M, Costello EK, Kolodny O, Relman DA. Short-Term Dairy Product Elimination and Reintroduction Minimally Perturbs the Gut Microbiota in Self-Reported Lactose-Intolerant Adults. Mbio. e0105122. PMID 35695459 DOI: 10.1128/mbio.01051-22  0.185
2017 Lindow JC, Wunder EA, Popper SJ, Min JN, Mannam P, Srivastava A, Yao Y, Hacker KP, Raddassi K, Lee PJ, Montgomery RR, Shaw AC, Hagan JE, Araújo GC, Nery N, ... Relman DA, et al. Correction: Cathelicidin Insufficiency in Patients with Fatal Leptospirosis. Plos Pathogens. 13: e1006646. PMID 28950012 DOI: 10.1371/Journal.Ppat.1006646  0.182
2008 Relman DA. Learning to appreciate our differences. The Journal of Infectious Diseases. 198: 4-5. PMID 18454681 DOI: 10.1086/588672  0.179
2017 Wise PH, Shaw GM, Druzin ML, Darmstadt GL, Quaintance C, Mäkinen E, Relman DA, Quake SR, Butte AJ, Angst MS, Muglia LJ, Macones G, Driscoll D, Ober C, Simpson JL, et al. Risky Business: Meeting the Structural Needs of Transdisciplinary Science. The Journal of Pediatrics. 191: 255-258. PMID 29173314 DOI: 10.1016/J.Jpeds.2017.08.072  0.178
2023 Goldman DA, Xue KS, Parrott AB, Jeeda RR, Lopez JG, Vila JCC, Petrov DA, Good BH, Relman DA, Huang KC. Competition for shared resources increases the impact of propagule size during coalescence of gut microbial communities. Biorxiv : the Preprint Server For Biology. PMID 38076867 DOI: 10.1101/2023.11.29.569120  0.178
2000 Olson JE, Relman DA. Biologic weapons: What infectious diseases practitioners need to know Infections in Medicine. 17: 29-44.  0.176
2012 Relman DA. Microbiology: Learning about who we are. Nature. 486: 194-5. PMID 22699602 DOI: 10.1038/486194A  0.174
1987 Relman DA, Ruoff K, Ferraro MJ. Stomatococcus mucilaginosus endocarditis in an intravenous drug abuser. The Journal of Infectious Diseases. 155: 1080-2. PMID 3559282 DOI: 10.1093/Infdis/155.5.1080  0.169
2023 Symul L, Jeganathan P, Costello EK, France M, Bloom SM, Kwon DS, Ravel J, Relman DA, Holmes S. Sub-communities of the vaginal microbiota in pregnant and non-pregnant women. Proceedings. Biological Sciences. 290: 20231461. PMID 38018105 DOI: 10.1098/rspb.2023.1461  0.168
2016 Callahan B, Proctor D, Relman D, Fukuyama J, Holmes S. REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 21: 183-94. PMID 26776185  0.158
1997 Denney CF, Ikeda RK, Colt HG, Lopez FA, Relman DA, Fierer J. Pleural bacillary angiomatosis in the acquired immunodeficiency syndrome Clinical Infectious Diseases. 25: 460.  0.15
2022 Bloom SM, Mafunda NA, Woolston BM, Hayward MR, Frempong JF, Abai AB, Xu J, Mitchell AJ, Westergaard X, Hussain FA, Xulu N, Dong M, Dong KL, Gumbi T, Ceasar FX, ... ... Relman DA, et al. Cysteine dependence of Lactobacillus iners is a potential therapeutic target for vaginal microbiota modulation. Nature Microbiology. 7: 434-450. PMID 35241796 DOI: 10.1038/s41564-022-01070-7  0.146
2020 Lewis G, Jordan JL, Relman DA, Koblentz GD, Leung J, Dafoe A, Nelson C, Epstein GL, Katz R, Montague M, Alley EC, Filone CM, Luby S, Church GM, Millett P, et al. The biosecurity benefits of genetic engineering attribution. Nature Communications. 11: 6294. PMID 33293537 DOI: 10.1038/s41467-020-19149-2  0.146
2002 Relman DA, Olson JE. Bioterrorism preparedness: Would you be ready? Consultant. 42: 25-32.  0.146
2001 Relman DA, Olson JE. Bioterrorism preparedness: What practitioners need to know Infections in Medicine. 18: 497-514.  0.142
2023 Romero R, Gervasi MT, DiGiulio DB, Jung E, Suksai M, Miranda J, Theis KR, Gotsch F, Relman DA. Are bacteria, fungi, and archaea present in the midtrimester amniotic fluid? Journal of Perinatal Medicine. PMID 37194083 DOI: 10.1515/jpm-2022-0604  0.142
2023 Costello EK, DiGiulio DB, Robaczewska A, Symul L, Wong RJ, Shaw GM, Stevenson DK, Holmes SP, Kwon DS, Relman DA. Abrupt perturbation and delayed recovery of the vaginal ecosystem following childbirth. Nature Communications. 14: 4141. PMID 37438386 DOI: 10.1038/s41467-023-39849-9  0.139
1998 Fredricks DN, Relman DA. Infectious agents and the etiology of chronic idiopathic diseases Current Clinical Topics in Infectious Diseases. 180-200. PMID 9779355  0.138
2023 Celis AI, Relman DA, Huang KC. The impact of iron and heme availability on the healthy human gut microbiome in vivo and in vitro. Cell Chemical Biology. PMID 36603582 DOI: 10.1016/j.chembiol.2022.12.001  0.134
2022 Jones RC, Karkanias J, Krasnow MA, Pisco AO, Quake SR, Salzman J, Yosef N, Bulthaup B, Brown P, Harper W, Hemenez M, Ponnusamy R, Salehi A, Sanagavarapu BA, Spallino E, ... ... Relman DA, et al. The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans. Science (New York, N.Y.). 376: eabl4896. PMID 35549404 DOI: 10.1126/science.abl4896  0.133
2002 Hajjeh RA, Relman D, Cieslak PR, Sofair AN, Passaro D, Flood J, Johnson J, Hacker JK, Shieh WJ, Hendry RM, Nikkari S, Ladd-Wilson S, Hadler J, Rainbow J, Tappero JW, et al. Surveillance for unexplained deaths and critical illnesses due to possibly infectious causes, United States, 1995-1998. Emerging Infectious Diseases. 8: 145-53. PMID 11897065 DOI: 10.3201/eid0802.010165  0.126
2024 Relman DA. Neurological Illness and National Security: Lessons to Be Learned. Jama. PMID 38497785 DOI: 10.1001/jama.2023.26818  0.12
2024 Lipsitch M, Inglesby TV, Cicero A, Relman DA. Public role in research oversight. Journal of Virology. e0006124. PMID 38477584 DOI: 10.1128/jvi.00061-24  0.12
1993 Relman DA, Koehler JE, Brenner DJ. Isolation of Rochalimaea species [3] New England Journal of Medicine. 328: 1422-1423. PMID 7682656 DOI: 10.1056/NEJM199305133281912  0.108
2021 Chan CC, Harley ITW, Pfluger PT, Trompette A, Stankiewicz TE, Allen JL, Moreno-Fernandez ME, Damen MSMA, Oates JR, Alarcon PC, Doll JR, Flick MJ, Flick LM, Sanchez-Gurmaches J, Mukherjee R, ... ... Relman DA, et al. A BAFF/APRIL axis regulates obesogenic diet-driven weight gain. Nature Communications. 12: 2911. PMID 34006859 DOI: 10.1038/s41467-021-23084-1  0.105
2012 Fukuyama J, McMurdie PJ, Dethlefsen L, Relman DA, Holmes S. Comparisons of distance methods for combining covariates and abundances in microbiome studies. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 213-24. PMID 22174277  0.097
2022 Marić I, Contrepois K, Moufarrej MN, Stelzer IA, Feyaerts D, Han X, Tang A, Stanley N, Wong RJ, Traber GM, Ellenberger M, Chang AL, Fallahzadeh R, Nassar H, Becker M, ... ... Relman DA, et al. Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns (New York, N.Y.). 3: 100655. PMID 36569558 DOI: 10.1016/j.patter.2022.100655  0.096
2021 Stevenson DK, Aghaeepour N, Maric I, Angst MS, Darmstadt GL, Druzin ML, Gaudilliere B, Ling XB, Moufarrej MN, Peterson LS, Quake SR, Relman DA, Snyder MP, Sylvester KG, Shaw GM, et al. Understanding how biologic and social determinants affect disparities in preterm birth and outcomes of preterm infants in the NICU. Seminars in Perinatology. 151408. PMID 33875265 DOI: 10.1016/j.semperi.2021.151408  0.092
2002 Relman DA, Olson JE. Ricin and staphylococcal enterotoxin B: Potential biologic weapons Consultant. 42: 370-371.  0.089
2005 Mai V, Stine OC, Morris JG, Eckburg PB, Bik EM, Bernstein CN, Dethlefsen L, Purdom E, Sargent M, Gill SR, Nelson KE, Relman DA. Timing in collection of stool samples [3] (multiple letters) Science. 310: 1118-1119. PMID 16293741 DOI: 10.1126/science.310.5751.1118  0.088
2021 Fischer N, Darmstadt GL, Shahunja KM, Crowther JM, Kendall L, Gibson RA, Ahmed T, Relman DA. Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: A randomised, controlled study. Journal of Global Health. 11: 04047. PMID 34386216 DOI: 10.7189/jogh.11.04047  0.082
2020 Relman DA. Opinion: To stop the next pandemic, we need to unravel the origins of COVID-19. Proceedings of the National Academy of Sciences of the United States of America. PMID 33144498 DOI: 10.1073/pnas.2021133117  0.08
1998 Stark P, Relman DA, Santamaria-Fries M, Luis Felipe Fajardo LG. Case report. Radiologic features of a fatal platyhelminth (tapeworm) infection in an AIDS patient American Journal of Roentgenology. 170: 136-138.  0.079
2021 Bloom JD, Chan YA, Baric RS, Bjorkman PJ, Cobey S, Deverman BE, Fisman DN, Gupta R, Iwasaki A, Lipsitch M, Medzhitov R, Neher RA, Nielsen R, Patterson N, Stearns T, ... ... Relman DA, et al. Investigate the origins of COVID-19. Science (New York, N.Y.). 372: 694. PMID 33986172 DOI: 10.1126/science.abj0016  0.078
2022 Pannu J, Palmer MJ, Cicero A, Relman DA, Lipsitch M, Inglesby T. Strengthen oversight of risky research on pathogens. Science (New York, N.Y.). 378: 1170-1172. PMID 36480598 DOI: 10.1126/science.adf6020  0.067
2023 Greene D, Palmer MJ, Relman DA. Motivating Proactive Biorisk Management. Health Security. PMID 36633603 DOI: 10.1089/hs.2022.0101  0.066
2002 Relman DA, Olson JE. Plague: What you need to know now Consultant. 42: 33.  0.051
1992 Sagerman PM, Relman DA, Niroomand F, Niedt GW. Localization of Mycobacterium Avium-Intracellulare Within a Skin Lesion of Bacillary Angiomatosis in a Patient with AIDS Diagnostic Molecular Pathology. 1: 212-216. DOI: 10.1097/00019606-199203000-00031  0.035
2024 Costello EK, DiGiulio DB, Robaczewska A, Symul L, Wong RJ, Shaw GM, Stevenson DK, Holmes SP, Kwon DS, Relman DA. Author Correction: Abrupt perturbation and delayed recovery of the vaginal ecosystem following childbirth. Nature Communications. 15: 1744. PMID 38409135 DOI: 10.1038/s41467-024-46160-8  0.027
2003 Artenstein AW, Rubins K, Relman DA. Smallpox vaccination [2] (multiple letters) New England Journal of Medicine. 348: 1925. DOI: 10.1056/NEJM200305083481915  0.023
2021 Pannu J, Sandbrink JB, Watson M, Palmer MJ, Relman DA. Protocols and risks: when less is more. Nature Protocols. PMID 34873329 DOI: 10.1038/s41596-021-00655-6  0.011
2002 Relman DA, Olson JE. Smallpox: A brief overview Consultant. 42.  0.01
2002 Relman DA, Olson JE. Tularemia: A brief overview Consultant. 42: 56.  0.01
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