Giri Narasimhan - Publications

Florida International University, Miami, FL, United States 
Computer Science, Microbiology Biology, Virology Biology, Bioinformatics Biology

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ruiz-Perez D, Coudray MS, Colbert B, Krupp K, Kumari H, Stebliankin V, Mathee K, Cook RL, Schwebke J, Narasimhan G, Madhivanan P. Effect of metronidazole on vaginal microbiota associated with asymptomatic bacterial vaginosis. Access Microbiology. 3: 000226. PMID 34151180 DOI: 10.1099/acmi.0.000226  0.56
2021 Ruiz-Perez D, Lugo-Martinez J, Bourguignon N, Mathee K, Lerner B, Bar-Joseph Z, Narasimhan G. Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data. Msystems. 6. PMID 33785573 DOI: 10.1128/mSystems.01105-20  0.56
2021 Sazal M, Stebliankin V, Mathee K, Yoo C, Narasimhan G. Causal effects in microbiomes using interventional calculus. Scientific Reports. 11: 5724. PMID 33707536 DOI: 10.1038/s41598-021-84905-3  0.56
2020 Sazal M, Mathee K, Ruiz-Perez D, Cickovski T, Narasimhan G. Inferring directional relationships in microbial communities using signed Bayesian networks. Bmc Genomics. 21: 663. PMID 33349235 DOI: 10.1186/s12864-020-07065-0  0.56
2020 Ruiz-Perez D, Guan H, Madhivanan P, Mathee K, Narasimhan G. So you think you can PLS-DA? Bmc Bioinformatics. 21: 2. PMID 33297937 DOI: 10.1186/s12859-019-3310-7  0.56
2020 Madhivanan P, Bokulich N, Coudray M, Colbert B, Ruiz-Perez D, Krupp K, Mathee K, Narasimhan G, Caporaso J. Composition of the Vaginal Microbiome Associated with High Risk HPV Infection and Increased Risk for Cervical Cancer Cancer Epidemiology and Prevention Biomarkers. 29: 696-696. DOI: 10.1158/1055-9965.Epi-20-0071  0.56
2019 Mathee K, Cickovski T, Deoraj A, Stollstorff M, Narasimhan G. The gut microbiome and neuropsychiatric disorders: implications for attention deficit hyperactivity disorder (ADHD). Journal of Medical Microbiology. PMID 31821133 DOI: 10.1099/Jmm.0.001112  0.56
2019 Stebliankin V, Valdes C, Mathee K, Narasimhan G. Adapting Flint for calculating bacterial replication rates in Microbiomes F1000research. 8. DOI: 10.7490/F1000Research.1117382.1  0.56
2019 Madhivanan P, Coudray M, Ruiz-Perez D, Colbert B, Krupp K, Kumari H, Mathee K, Narasimhan G. P372 Bacterial vaginosis and high-risk human papillomavirus coinfection among african american women in the united states Sexually Transmitted Infections. 95. DOI: 10.1136/Sextrans-2019-Sti.474  0.56
2019 Coudray M, Ruiz-Perez D, Colbert B, Krupp K, Kumari H, Narasimhan G, Mathee K, Madhivanan P. P371 Effect of metronidazole treatment on recurrent and persistent bacterial vaginosis: a pilot study Sexually Transmitted Infections. 95. DOI: 10.1136/Sextrans-2019-Sti.473  0.56
2018 Damaso N, Mendel J, Mendoza M, von Wettberg EJ, Narasimhan G, Mills D. Bioinformatics Approach to Assess the Biogeographical Patterns of Soil Communities: The Utility for Soil Provenance. Journal of Forensic Sciences. PMID 29357400 DOI: 10.1111/1556-4029.13741  0.36
2016 Aguiar-Pulido V, Huang W, Suarez-Ulloa V, Cickovski T, Mathee K, Narasimhan G. Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis. Evolutionary Bioinformatics Online. 12: 5-16. PMID 27199545 DOI: 10.4137/Ebo.S36436  0.72
2016 Narasimhan M, Vietri G, Aguiar-Pulido V, Mehta A, Rajabli F, Mathee K, Narasimhan G. Predicting symptom severity and contagiousness of respiratory viral infections F1000research. 5. DOI: 10.7490/F1000Research.1112564.1  0.56
2015 Fernandez M, Riveros JD, Campos M, Mathee K, Narasimhan G. Microbial "social networks". Bmc Genomics. 16: S6. PMID 26576770 DOI: 10.1186/1471-2164-16-S11-S6  0.72
2015 Mittal R, Lisi CV, Gerring R, Mittal J, Mathee K, Narasimhan G, Azad RK, Yao Q, Grati M, Yan D, Eshraghi AA, Angeli SI, Telischi FF, Liu XZ. Current concepts in the pathogenesis and treatment of chronic suppurative otitis media. Journal of Medical Microbiology. PMID 26248613 DOI: 10.1099/Jmm.0.000155  0.72
2014 Caille O, Zincke D, Merighi M, Balasubramanian D, Kumari H, Kong KF, Silva-Herzog E, Narasimhan G, Schneper L, Lory S, Mathee K. Structural and functional characterization of Pseudomonas aeruginosa global regulator AmpR. Journal of Bacteriology. 196: 3890-902. PMID 25182487 DOI: 10.1128/Jb.01997-14  0.72
2014 Balasubramanian D, Kumari H, Jaric M, Fernandez M, Turner KH, Dove SL, Narasimhan G, Lory S, Mathee K. Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response. Nucleic Acids Research. 42: 979-98. PMID 24157832 DOI: 10.1093/Nar/Gkt942  0.72
2013 Jaric M, Segal J, Silva-Herzog E, Schneper L, Mathee K, Narasimhan G. Better primer design for metagenomics applications by increasing taxonomic distinguishability. Bmc Proceedings. 7: S4. PMID 24564926 DOI: 10.1186/1753-6561-7-S7-S4  0.56
2013 Jaric M, Segal J, Silva-Herzog E, Schneper L, Mathee K, Narasimhan G. Designing primers with higher taxonomic distinguishability Proceedings - 29th Southern Biomedical Engineering Conference, Sbec 2013. 157-158. DOI: 10.1109/SBEC.2013.87  0.72
2013 Fernandez M, Jaric M, Schneper L, Segal J, Silva-Herzog E, Campos M, Fishman J, Salathe M, Wanner A, Infante J, Mathee K, Narasimhan G. A metagenomic approach to the airways microbiome of chronic obstructive pulmonary disease (COPD) Proceedings - 29th Southern Biomedical Engineering Conference, Sbec 2013. 151-152. DOI: 10.1109/SBEC.2013.84  0.72
2012 Balasubramanian D, Schneper L, Merighi M, Smith R, Narasimhan G, Lory S, Mathee K. The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. Plos One. 7: e34067. PMID 22479525 DOI: 10.1371/Journal.Pone.0034067  0.72
2012 Cattoir V, Narasimhan G, Skurnik D, Aschard H, Roux D, Ramphal R, Jyot J, Lory S. Transcriptional response of mucoid pseudomonas aeruginosa to human respiratory mucus Mbio. 3. DOI: 10.1128/Mbio.00410-12  0.72
2012 Zeng E, Ding C, Mathee K, Schneper L, Narasimhan G. Gene Function Prediction and Functional Network: The Role of Gene Ontology Intelligent Systems Reference Library. 25: 123-162. DOI: 10.1007/978-3-642-23151-3_7  0.72
2010 Doud MS, Light M, Gonzalez G, Narasimhan G, Mathee K. Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients. Human Genomics. 4: 147-69. PMID 20368138 DOI: 10.1186/1479-7364-4-3-147  0.72
2010 Zeng E, Yang C, Li T, Narasimhan G. Clustering Genes Using Heterogeneous Data Sources International Journal of Knowledge Discovery in Bioinformatics. 1: 12-28. DOI: 10.4018/Jkdb.2010040102  0.84
2009 Buendia P, Narasimhan G. Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains. Bmc Systems Biology. 3: 62. PMID 19531207 DOI: 10.1186/1752-0509-3-62  0.64
2009 Doud M, Zeng E, Schneper L, Narasimhan G, Mathee K. Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung. Human Genomics. 3: 246-56. PMID 19403459 DOI: 10.1186/1479-7364-3-3-246  0.72
2009 Gonzalez G, Doud M, Mathee K, Narasimhan G. Computer-assisted bacterial identification using 16S rRNA sequence data Ifmbe Proceedings. 24: 239-240. DOI: 10.1007/978-3-642-01697-4_84  0.72
2008 Zeng E, Ding C, Narasimhan G, Holbrook SR. Estimating support for protein-protein interaction data with applications to function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 73-84. PMID 19642270  0.72
2008 Mathee K, Narasimhan G, Valdes C, Qiu X, Matewish JM, Koehrsen M, Rokas A, Yandava CN, Engels R, Zeng E, Olavarietta R, Doud M, Smith RS, Montgomery P, White JR, et al. Dynamics of Pseudomonas aeruginosa genome evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 3100-5. PMID 18287045 DOI: 10.1073/Pnas.0711982105  0.72
2008 Buendia P, Collins TM, Narasimhan G. The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. International Journal of Bioinformatics Research and Applications. 4: 107-21. PMID 18283032 DOI: 10.1504/Ijbra.2008.017167  0.72
2008 Entry JA, Mills D, Mathee K, Jayachandran K, Sojka RE, Narasimhan G. Influence of irrigated agriculture on soil microbial diversity Applied Soil Ecology. 40: 146-154. DOI: 10.1016/J.Apsoil.2008.03.012  0.72
2007 Zeng E, Mathee K, Narasimhan G. IEM: an algorithm for iterative enhancement of motifs using comparative genomics data. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 227-35. PMID 17951827  0.72
2007 Buendia P, Narasimhan G. Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach. Bioinformatics (Oxford, England). 23: 2993-3000. PMID 17717035 DOI: 10.1093/Bioinformatics/Btm413  0.64
2006 Buendia P, Narasimhan G. Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network. Bioinformatics (Oxford, England). 22: 2313-4. PMID 16844708 DOI: 10.1093/Bioinformatics/Btl387  0.64
2006 Yang C, Mills D, Mathee K, Wang Y, Jayachandran K, Sikaroodi M, Gillevet P, Entry J, Narasimhan G. An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods. 65: 49-62. PMID 16054254 DOI: 10.1016/J.Mimet.2005.06.012  0.84
2005 Yang C, Zeng E, Li T, Narasimhan G. Clustering genes using gene expression and text literature data. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 329-40. PMID 16447990 DOI: 10.1109/CSB.2005.23  0.72
2004 Buendia P, Narasimhan G. MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 110-9. PMID 16448005  0.64
2004 Stapper AP, Narasimhan G, Ohman DE, Barakat J, Hentzer M, Molin S, Kharazmi A, Høiby N, Mathee K. Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formation. Journal of Medical Microbiology. 53: 679-90. PMID 15184541 DOI: 10.1099/Jmm.0.45539-0  0.72
2003 Mathee K, Narasimhan G. Detection of DNA-binding helix-turn-helix motifs in proteins using the pattern dictionary method. Methods in Enzymology. 370: 250-64. PMID 14712650 DOI: 10.1016/S0076-6879(03)70022-6  0.72
2002 Sutter TR, He XR, Dimitrov P, Xu L, Narasimhan G, George EO, Sutter CH, Grubbs C, Savory R, Stephan-Gueldner M, Kreder D, Taylor MJ, Lubet R, Patterson TA, Kensler TW. Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: procedure and application to the preclinical evaluation of chemopreventive agents. Molecular Cancer Therapeutics. 1: 1283-92. PMID 12516961  0.72
2002 Narasimhan G, Bu C, Gao Y, Wang X, Xu N, Mathee K. Mining protein sequences for motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 707-20. PMID 12487759 DOI: 10.1089/106652702761034145  0.72
1998 Jagota A, Narasimhan G, Regan KW. Information capacity of binary weights associative memories Neurocomputing. 19: 35-58. DOI: 10.1016/S0925-2312(97)00097-0  0.72
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