Shawn W. Polson, Ph.D. - Publications

Affiliations: 
2007 Medical University of South Carolina, Charleston, SC, United States 
Area:
Microbiology Biology, Oceanography Biology, Molecular Biology

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Leek CC, Soulas JM, Bhattacharya I, Ganji E, Locke RC, Smith MC, Bhavsar JD, Polson SW, Ornitz DM, Killian ML. Deletion of Fibroblast growth factor 9 globally and in skeletal muscle results in enlarged tuberosities at sites of deltoid tendon attachments. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 34091985 DOI: 10.1002/dvdy.383  1
2021 Rosier CL, Polson SW, D'Amico V, Kan J, Trammell TLE. Urbanization pressures alter tree rhizosphere microbiomes. Scientific Reports. 11: 9447. PMID 33941814 DOI: 10.1038/s41598-021-88839-8  0.36
2021 MacDonald ML, Polson SW, Lee KH. -mer-Based Metagenomics Tools Provide a Fast and Sensitive Approach for the Detection of Viral Contaminants in Biopharmaceutical and Vaccine Manufacturing Applications Using Next-Generation Sequencing. Msphere. 6. PMID 33883263 DOI: 10.1128/mSphere.01336-20  1
2021 Richards GP, Watson MA, Madison D, Soffer N, Needleman DS, Soroka DS, Uknalis J, Baranzoni GM, Church KM, Polson SW, Elston R, Langdon C, Sulakvelidze A. Bacteriophages against and : Isolation, Characterization and Remediation of Larval Oyster Mortalities. Applied and Environmental Microbiology. PMID 33674441 DOI: 10.1128/AEM.00008-21  1
2020 Sakowski EG, Wommack KE, Polson SW. Oyster Calcifying Fluid Harbors Persistent and Dynamic Autochthonous Bacterial Populations That May Aid in Shell Formation. Marine Ecology Progress Series. 653: 57-75. PMID 33424068 DOI: 10.3354/meps13487  1
2020 McAllister SM, Vandzura R, Keffer JL, Polson SW, Chan CS. Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents. The Isme Journal. PMID 33328652 DOI: 10.1038/s41396-020-00849-y  1
2020 Ovadia EM, Pradhan L, Sawicki LA, Cowart JE, Huber RE, Polson SW, Chen C, van Golen KL, Ross KE, Wu CH, Kloxin AM. Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence. Advanced Biosystems. e2000119. PMID 32603024 DOI: 10.1002/adbi.202000119  1
2020 Barnum CE, Al Saai S, Patel SD, Cheng C, Anand D, Xu X, Dash S, Siddam AD, Glazewski L, Paglione E, Polson SW, Chuma S, Mason RW, Wei S, Batish M, et al. The Tudor-domain protein TDRD7, mutated in congenital cataract, controls the heat shock protein HSPB1 (HSP27) and lens fiber cell morphology. Human Molecular Genetics. PMID 32420594 DOI: 10.1093/Hmg/Ddaa096  1
2020 Moore RM, Harrison AO, McAllister SM, Polson SW, Wommack KE. Iroki: automatic customization and visualization of phylogenetic trees. Peerj. 8: e8584. PMID 32149022 DOI: 10.7717/Peerj.8584  1
2020 Joglekar P, Mesa CP, Richards VA, Polson SW, Wommack KE, Fuhrmann JJ. Polyphasic analysis reveals correlation between phenotypic and genotypic analysis in soybean bradyrhizobia (Bradyrhizobium spp.). Systematic and Applied Microbiology. 126073. PMID 32139173 DOI: 10.1016/J.Syapm.2020.126073  1
2020 Marston MF, Polson SW. Whole-Genome Sequence of the Cyanobacterium sp. Strain WH 8101. Microbiology Resource Announcements. 9. PMID 32079636 DOI: 10.1128/MRA.01593-19  0.01
2020 McAllister SM, Polson SW, Butterfield DA, Glazer BT, Sylvan JB, Chan CS. Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Iron Mats at Marine Hydrothermal Vents. Msystems. 5. PMID 32071158 DOI: 10.1128/mSystems.00553-19  1
2019 Polson SW, Zheng L, Bhavsar JD. Core Analysis Viewer: Simplifying Omics Data Delivery, Training, and Interpretation. Journal of Biomolecular Techniques : Jbt. 30: S9. PMID 31892880  1
2019 Cusick KD, Polson SW, Duran G, Hill RT. Multiple Mega-plasmids Confer Extremely High Metal Tolerance in Strains. Applied and Environmental Microbiology. PMID 31757820 DOI: 10.1128/Aem.01831-19  0.01
2019 Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, Resende MLV. Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. Plos One. 14: e0215598. PMID 30998802 DOI: 10.1371/Journal.Pone.0215598  1
2019 Nasko DJ, Ferrell BD, Moore RM, Bhavsar JD, Polson SW, Wommack KE. CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes. Mbio. 10. PMID 30837341 DOI: 10.1128/Mbio.02651-18  1
2019 Harrison AO, Moore RM, Polson SW, Wommack KE. Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton. Frontiers in Microbiology. 10: 134. PMID 30804913 DOI: 10.3389/Fmicb.2019.00134  1
2019 Hempel P, Keffer JL, Shevchenko O, Henny C, Polson SW, Maresca JA. Complete Genome Sequence of sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake. Microbiology Resource Announcements. 8. PMID 30701259 DOI: 10.1128/MRA.01649-18  1
2019 Maresca JA, Keffer JL, Hempel P, Polson SW, Shevchenko O, Bhavsar J, Powell D, Miller KJ, Singh A, Hahn MW. Light modulates the physiology of non-phototrophic Actinobacteria. Journal of Bacteriology. PMID 30692175 DOI: 10.1128/Jb.00740-18  1
2019 Lv M, Zhou Y, Polson SW, Wan LQ, Wang M, Han L, Wang L, Lu XL. Identification of Chondrocyte Genes and Signaling Pathways in Response to Acute Joint Inflammation. Scientific Reports. 9: 93. PMID 30643177 DOI: 10.1038/S41598-018-36500-2  0.01
2019 Richards GP, Needleman DS, Watson MA, Polson SW. Whole-Genome Sequences of Two Pseudoalteromonas piscicida Strains, DE1-A and DE2-A, with Strong Antibacterial Activity against Vibrio vulnificus. Microbiology Resource Announcements. 8. PMID 30637397 DOI: 10.1128/MRA.01451-18  0.01
2018 Nasko DJ, Chopyk J, Sakowski EG, Ferrell BD, Polson SW, Wommack KE. Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton. Frontiers in Microbiology. 9: 3053. PMID 30619142 DOI: 10.3389/Fmicb.2018.03053  1
2018 Rupp O, MacDonald ML, Li S, Dhiman H, Polson S, Griep S, Heffner K, Hernandez I, Brinkrolf K, Jadhav V, Samoudi M, Hao H, Kingham B, Goesmann A, Betenbaugh MJ, et al. A reference genome of the Chinese hamster based on a hybrid assembly strategy. Biotechnology and Bioengineering. PMID 29704459 DOI: 10.1002/Bit.26722  1
2017 Marine RL, Nasko DJ, Wray J, Polson SW, Wommack KE. Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology. The Isme Journal. PMID 28731469 DOI: 10.1038/Ismej.2017.102  1
2017 Manching H, Sengupta S, Hopper KR, Polson SW, Ji Y, Wisser RJ. Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize. G3 (Bethesda, Md.). PMID 28526729 DOI: 10.1534/G3.117.042036  0.01
2016 Mhora TT, Ernest EG, Wisser RJ, Evans TA, Patzoldt ME, Gregory NF, Westhafer SE, Polson SW, Donofrio NM. Genotyping-by-Sequencing to Predict Resistance to Lima Bean Downy Mildew in a Diversity Panel. Phytopathology. PHYTO02160087FI. PMID 27546812 DOI: 10.1094/Phyto-02-16-0087-Fi  1
2016 Chen C, Huang H, Mazumder R, Natale DA, McGarvey PB, Zhang J, Polson SW, Wang Y, Wu CH. Computational clustering for viral reference proteomes. Bioinformatics (Oxford, England). PMID 27153712 DOI: 10.1093/Bioinformatics/Btw110  1
2015 Barthold JS, Pugarelli J, MacDonald ML, Ren J, Adetunji MO, Polson SW, Mateson A, Wang Y, Sol-Church K, McCahan SM, Akins RE, Devoto M, Robbins AK. Polygenic inheritance of cryptorchidism susceptibility in the LE/orl rat. Molecular Human Reproduction. PMID 26502805 DOI: 10.1093/Molehr/Gav060  1
2015 Bishnoi U, Polson SW, Sherrier DJ, Bais HP. Draft Genome Sequence of a Natural Root Isolate, Bacillus subtilis UD1022, a Potential Plant Growth-Promoting Biocontrol Agent. Genome Announcements. 3. PMID 26159522 DOI: 10.1128/Genomea.00696-15  0.01
2015 Crowgey EL, Stabley DL, Chen C, Huang H, Robbins KM, Polson SW, Sol-Church K, Wu CH. An integrated approach for analyzing clinical genomic variant data from next-generation sequencing. Journal of Biomolecular Techniques : Jbt. 26: 19-28. PMID 25649353 DOI: 10.7171/Jbt.15-2601-002  1
2014 Manthey AL, Terrell AM, Lachke SA, Polson SW, Duncan MK. Development of novel filtering criteria to analyze RNA-sequencing data obtained from the murine ocular lens during embryogenesis. Genomics Data. 2: 369-374. PMID 25478318 DOI: 10.1016/J.Gdata.2014.10.015  1
2014 Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE. Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses. Proceedings of the National Academy of Sciences of the United States of America. 111: 15786-91. PMID 25313075 DOI: 10.1073/pnas.1401322111  1
2014 Wyffels J, King BL, Vincent J, Chen C, Wu CH, Polson SW. SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes. F1000research. 3: 191. PMID 25309735 DOI: 10.12688/F1000Research.4996.1  1
2014 Schulz MD, Atay C, Heringer J, Romrig FK, Schwitalla S, Aydin B, Ziegler PK, Varga J, Reindl W, Pommerenke C, Salinas-Riester G, Böck A, Alpert C, Blaut M, Polson SC, ... ... Polson SW, et al. High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity. Nature. 514: 508-12. PMID 25174708 DOI: 10.1038/Nature13398  1
2014 Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC. Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum. Genome Announcements. 2. PMID 24699952 DOI: 10.1128/Genomea.00226-14  1
2014 Marine R, McCarren C, Vorrasane V, Nasko D, Crowgey E, Polson SW, Wommack KE. Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome. Microbiome. 2: 3. PMID 24475755 DOI: 10.1186/2049-2618-2-3  1
2014 Schmidt HF, Sakowski EG, Williamson SJ, Polson SW, Wommack KE. Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton. The Isme Journal. 8: 103-14. PMID 23985748 DOI: 10.1038/Ismej.2013.124  1
2013 Huang X, Bruce B, Buchan A, Congdon CB, Cramer CL, Jennings SF, Jiang H, Li Z, McClure G, McMullen R, Moore JH, Nanduri B, Peckham J, Perkins A, Polson SW, et al. No-boundary thinking in bioinformatics research. Biodata Mining. 6: 19. PMID 24192339 DOI: 10.1186/1756-0381-6-19  1
2013 Campbell BJ, Polson SW, Zeigler Allen L, Williamson SJ, Lee CK, Wommack KE, Cary SC. Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities. Frontiers in Microbiology. 4: 182. PMID 23898323 DOI: 10.3389/Fmicb.2013.00182  1
2013 Srinivasiah S, Lovett J, Polson S, Bhavsar J, Ghosh D, Roy K, Fuhrmann JJ, Radosevich M, Wommack KE. Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA. Applied and Environmental Microbiology. 79: 5450-7. PMID 23793630 DOI: 10.1128/Aem.00268-13  1
2012 Wommack KE, Bhavsar J, Polson SW, Chen J, Dumas M, Srinivasiah S, Furman M, Jamindar S, Nasko DJ. VIROME: a standard operating procedure for analysis of viral metagenome sequences. Standards in Genomic Sciences. 6: 427-39. PMID 23407591 DOI: 10.4056/Sigs.2945050  1
2012 Jamindar S, Polson SW, Srinivasiah S, Waidner L, Wommack KE. Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome size. Applied and Environmental Microbiology. 78: 8773-83. PMID 23064328 DOI: 10.1128/Aem.02432-12  1
2012 Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC. Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing. Plos One. 7: e44224. PMID 22970184 DOI: 10.1371/Journal.Pone.0044224  1
2012 Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH. Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees. Database : the Journal of Biological Databases and Curation. 2012: bar064. PMID 22434832 DOI: 10.1093/Database/Bar064  1
2012 Hammond S, Swanberg JC, Polson SW, Lee KH. Profiling conserved microRNA expression in recombinant CHO cell lines using Illumina sequencing. Biotechnology and Bioengineering. 109: 1371-5. PMID 22189905 DOI: 10.1002/Bit.24415  0.01
2011 Dumas MD, Polson SW, Ritter D, Ravel J, Gelb J, Morgan R, Wommack KE. Impacts of poultry house environment on poultry litter bacterial community composition. Plos One. 6: e24785. PMID 21949751 DOI: 10.1371/Journal.Pone.0024785  1
2011 Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE. Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Applied and Environmental Microbiology. 77: 8071-9. PMID 21948828 DOI: 10.1128/Aem.05610-11  1
2011 Polson SW, Wilhelm SW, Wommack KE. Unraveling the viral tapestry (from inside the capsid out). The Isme Journal. 5: 165-8. PMID 20555364 DOI: 10.1038/Ismej.2010.81  1
2011 Polson SW, Wilhelm SW, Wommack KE. Erratum: Unraveling the viral tapestry (from inside the capsid out) The Isme Journal. 5: 366-366. DOI: 10.1038/Ismej.2010.122  1
2011 Williamson KE, Kan J, Polson SW, Williamson SJ. Optimizing the indirect extraction of prokaryotic DNA from soils Soil Biology and Biochemistry. 43: 736-748. DOI: 10.1016/J.Soilbio.2010.04.017  1
2011 Wommack KE, Srinivasiah S, Liles MR, Bhavsar J, Bench S, Williamson KE, Polson SW. Metagenomic Contrasts of Viruses in Soil and Aquatic Environments Handbook of Molecular Microbial Ecology Ii: Metagenomics in Different Habitats. 25-36. DOI: 10.1002/9781118010549.ch4  1
2010 Campbell BJ, Polson SW, Hanson TE, Mack MC, Schuur EA. The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environmental Microbiology. 12: 1842-54. PMID 20236166 DOI: 10.1111/J.1462-2920.2010.02189.X  1
2010 Schoenfeld T, Liles M, Wommack KE, Polson SW, Godiska R, Mead D. Functional viral metagenomics and the next generation of molecular tools. Trends in Microbiology. 18: 20-9. PMID 19896852 DOI: 10.1016/J.Tim.2009.10.001  1
2006 Cervino JM, Winiarski-Cervino K, Polson SW, Goreau T, Smith GW. Identification of bacteria associated with a disease affecting the marine sponge Ianthella basta in New Britain, Papua New Guinea Marine Ecology Progress Series. 324: 139-150. DOI: 10.3354/Meps324139  1
2004 Cervino JM, Hayes RL, Polson SW, Polson SC, Goreau TJ, Martinez RJ, Smith GW. Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in caribbean corals Applied and Environmental Microbiology. 70: 6855-6864. PMID 15528553 DOI: 10.1128/Aem.70.11.6855-6864.2004  1
2003 Denner EB, Smith GW, Busse HJ, Schumann P, Narzt T, Polson SW, Lubitz W, Richardson LL. Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian corals. International Journal of Systematic and Evolutionary Microbiology. 53: 1115-22. PMID 12892136 DOI: 10.1099/Ijs.0.02359-0  1
2002 Bagwell CE, Rocque JR, Smith GW, Polson SW, Friez MJ, Longshore JW, Lovell CR. Molecular diversity of diazotrophs in oligotrophic tropical seagrass bed communities. Fems Microbiology Ecology. 39: 113-9. PMID 19709190 DOI: 10.1111/J.1574-6941.2002.Tb00912.X  1
2002 Patterson KL, Porter JW, Ritchie KB, Polson SW, Mueller E, Peters EC, Santavy DL, Smith GW. The etiology of white pox, a lethal disease of the Caribbean elkhorn coral, Acropora palmata. Proceedings of the National Academy of Sciences of the United States of America. 99: 8725-30. PMID 12077296 DOI: 10.1073/Pnas.092260099  1
2001 Ritchie KB, Polson SW, Smith GW. Microbial disease causation in marine invertebrates: Problems, practices, and future prospects Hydrobiologia. 460: 131-139. DOI: 10.1023/A:1013181718805  1
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