Shou-Wei Ding - Publications

Affiliations: 
University of California, Riverside, Riverside, CA, United States 
Area:
Virology Biology, Microbiology Biology, Immunology

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhang Y, Xu Y, Dai Y, Li Z, Wang J, Ye Z, Ren Y, Wang H, Li WX, Lu J, Ding SW, Li Y. Efficient Dicer processing of virus-derived double-stranded RNAs and its modulation by RIG-I-like receptor LGP2. Plos Pathogens. 17: e1009790. PMID 34343211 DOI: 10.1371/journal.ppat.1009790  0.01
2021 Shahrudin S, Ding SW. Boosting stem cell immunity to viruses. Science (New York, N.Y.). 373: 160-161. PMID 34244399 DOI: 10.1126/science.abj5673  0.01
2021 Wei T, Ding SW. Editorial overview: Mechanisms in the molecular interactions of plants with viruses and viroids. Current Opinion in Virology. 49: 27-29. PMID 34029991 DOI: 10.1016/j.coviro.2021.04.007  0.08
2020 Wang H, Tian Z, Xu Y, Wang Q, Ding SW, Li Y. Altering Intracellular Localization of the RNA Interference Factors by Influenza A Virus Non-structural Protein 1. Frontiers in Microbiology. 11: 590904. PMID 33281788 DOI: 10.3389/fmicb.2020.590904  0.04
2020 Chen ZQ, Zhao JH, Chen Q, Zhang ZH, Li J, Guo Z, Xie Q, Ding SW, Guo HS. DNA Geminivirus Infection Induces an Imprinted E3 Ligase Gene to Epigenetically Activate Viral Gene Transcription. The Plant Cell. PMID 32769133 DOI: 10.1105/Tpc.20.00249  0.04
2020 Han Q, Chen G, Wang J, Jee D, Li WX, Lai EC, Ding SW. Mechanism and Function of Antiviral RNA Interference in Mice. Mbio. 11. PMID 32753500 DOI: 10.1128/Mbio.03278-19  0.04
2020 Chen ZQ, Ding SW. JAcked Responses Go Viral: Hormonal Regulation of Antiviral RNAi. Cell Host & Microbe. 28: 7-9. PMID 32645354 DOI: 10.1016/J.Chom.2020.06.007  0.01
2020 Zhang C, Wei Y, Xu L, Wu KC, Yang L, Shi CN, Yang GY, Chen D, Yu FF, Xie Q, Li Y, Ding SW, Wu JG. A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA Polymerase IV for Degradation during Viral Pathogenesis in Rice. Molecular Plant. PMID 32087369 DOI: 10.1016/J.Molp.2020.02.010  0.01
2020 Zhang L, Xu W, Gao X, Li W, Qi S, Guo D, Ajayi OE, Ding SW, Wu Q. lncRNA Sensing of a Viral Suppressor of RNAi Activates Non-canonical Innate Immune Signaling in Drosophila. Cell Host & Microbe. 27: 115-128.e8. PMID 31917956 DOI: 10.1016/J.Chom.2019.12.006  0.01
2019 Guo Z, Wang XB, Li WX, Ding SW. A Sensitized Genetic Screen to Identify Novel Components and Regulators of the Host Antiviral RNA Interference Pathway. Methods in Molecular Biology (Clifton, N.J.). 2028: 215-229. PMID 31228117 DOI: 10.1007/978-1-4939-9635-3_12  0.01
2018 Ding SW. Editorial overview: Engineering for viral resistance. Current Opinion in Virology. 32: iii. PMID 30473418 DOI: 10.1016/j.coviro.2018.11.004  0.01
2018 Guo Z, Li Y, Ding SW. Small RNA-based antimicrobial immunity. Nature Reviews. Immunology. PMID 30301972 DOI: 10.1038/S41577-018-0071-X  0.01
2018 Ding SW, Han Q, Wang J, Li WX. Antiviral RNA interference in mammals. Current Opinion in Immunology. 54: 109-114. PMID 30015086 DOI: 10.1016/J.Coi.2018.06.010  0.01
2018 Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S. Correction for Gaulke et al., "Intestinal Epithelial Barrier Disruption through Altered Mucosal MicroRNA Expression in Human Immunodeficiency Virus and Simian Immunodeficiency Virus Infections". Journal of Virology. 92. PMID 29844248 DOI: 10.1128/Jvi.00548-18  0.01
2018 Han Y, Wu Q, Ding SW. Templating Antiviral RNAi in Insects. Cell Host & Microbe. 23: 290-292. PMID 29544093 DOI: 10.1016/J.Chom.2018.02.010  0.01
2018 Aman R, Ali Z, Butt H, Mahas A, Aljedaani F, Khan MZ, Ding S, Mahfouz M. RNA virus interference via CRISPR/Cas13a system in plants. Genome Biology. 19: 1. PMID 29301551 DOI: 10.1186/S13059-017-1381-1  0.01
2017 Gao H, Yang M, Yang H, Qin Y, Zhu B, Xu G, Xie C, Wu D, Zhang X, Li W, Yan J, Song S, Qi T, Ding SW, Xie D. Arabidopsis ENOR3 regulates RNAi-mediated antiviral defense. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 29396140 DOI: 10.1016/J.Jgg.2017.11.005  0.01
2017 Guo Z, Wang XB, Wang Y, Li WX, Gal-On A, Ding SW. Identification of a new host factor required for antiviral RNAi and amplification of viral siRNAs. Plant Physiology. PMID 29184028 DOI: 10.1104/Pp.17.01370  0.01
2017 Jeffrey KL, Li Y, Ding SW. Reply to 'Questioning antiviral RNAi in mammals'. Nature Microbiology. 2: 17053. PMID 28440274 DOI: 10.1038/Nmicrobiol.2017.53  0.04
2017 Coffman SR, Lu J, Guo X, Zhong J, Jiang H, Broitman-Maduro G, Li WX, Lu R, Maduro M, Ding SW. Caenorhabditis elegans RIG-I Homolog Mediates Antiviral RNA Interference Downstream of Dicer-Dependent Biogenesis of Viral Small Interfering RNAs. Mbio. 8. PMID 28325765 DOI: 10.1128/Mbio.00264-17  0.12
2017 Guo Z, Lu J, Wang X, Zhan B, Li W, Ding SW. Lipid flippases promote antiviral silencing and the biogenesis of viral and host siRNAs in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28123063 DOI: 10.1073/Pnas.1614204114  0.04
2017 Wu D, Qi T, Li WX, Tian H, Gao H, Wang J, Ge J, Yao R, Ren C, Wang XB, Liu Y, Kang L, Ding SW, Xie D. Viral effector protein manipulates host hormone signaling to attract insect vectors. Cell Research. PMID 28059067 DOI: 10.1038/Cr.2017.2  0.01
2016 Li Y, Basavappa M, Lu J, Dong S, Cronkite DA, Prior JT, Reinecker HC, Hertzog P, Han Y, Li WX, Cheloufi S, Karginov FV, Ding SW, Jeffrey KL. Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells. Nature Microbiology. 2: 16250. PMID 27918527 DOI: 10.1038/nmicrobiol.2016.250  0.01
2016 Leibman D, Kravchik M, Wolf D, Haviv S, Weissberg M, Ophir R, Paris HS, Palukaitis P, Ding SW, Gaba V, Gal-On A. Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defense and resistance. Molecular Plant Pathology. PMID 27879040 DOI: 10.1111/Mpp.12518  0.01
2016 Zhao JH, Fang YY, Duan CG, Fang RX, Ding SW, Guo HS. Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis. Scientific Reports. 6: 36247. PMID 27786269 DOI: 10.1038/Srep36247  0.01
2016 Zhang T, Zhao YL, Zhao JH, Wang S, Jin Y, Chen ZQ, Fang YY, Hua CL, Ding SW, Guo HS. Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen. Nature Plants. 2: 16153. PMID 27668926 DOI: 10.1038/Nplants.2016.153  1
2015 Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW, Baulcombe DC. Retraction: 'Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana'. The Embo Journal. PMID 26286615 DOI: 10.15252/Embj.201570030  0.04
2015 Wu Q, Ding SW, Zhang Y, Zhu S. Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms. Annual Review of Phytopathology. PMID 26047558 DOI: 10.1146/Annurev-Phyto-080614-120030  0.01
2015 Fan X, Dong S, Li Y, Ding SW, Wang M. RIG-I-dependent antiviral immunity is effective against an RNA virus encoding a potent suppressor of RNAi. Biochemical and Biophysical Research Communications. 460: 1035-40. PMID 25843799 DOI: 10.1016/J.Bbrc.2015.03.145  0.01
2014 Zhang Z, Qi S, Tang N, Zhang X, Chen S, Zhu P, Ma L, Cheng J, Xu Y, Lu M, Wang H, Ding SW, Li S, Wu Q. Discovery of replicating circular RNAs by RNA-seq and computational algorithms. Plos Pathogens. 10: e1004553. PMID 25503469 DOI: 10.1371/Journal.Ppat.1004553  0.16
2014 Ding SW, Voinnet O. Antiviral RNA silencing in mammals: no news is not good news. Cell Reports. 9: 795-7. PMID 25437534 DOI: 10.1016/J.Celrep.2014.10.029  0.01
2014 Cao M, Du P, Wang X, Yu YQ, Qiu YH, Li W, Gal-On A, Zhou C, Li Y, Ding SW. Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 14613-8. PMID 25201959 DOI: 10.1073/Pnas.1407131111  0.01
2014 Jiang H, Lei R, Ding SW, Zhu S. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads. Bmc Bioinformatics. 15: 182. PMID 24925680 DOI: 10.1186/1471-2105-15-182  0.01
2014 Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S. Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. Journal of Virology. 88: 6268-80. PMID 24672033 DOI: 10.1128/Jvi.00097-14  1
2013 Li Y, Lu J, Han Y, Fan X, Ding SW. RNA interference functions as an antiviral immunity mechanism in mammals. Science (New York, N.Y.). 342: 231-4. PMID 24115437 DOI: 10.1126/Science.1241911  0.01
2013 Guo X, Zhang R, Wang J, Ding SW, Lu R. Homologous RIG-I-like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 110: 16085-90. PMID 24043766 DOI: 10.1073/Pnas.1307453110  0.01
2012 Wu Q, Wang Y, Cao M, Pantaleo V, Burgyan J, Li WX, Ding SW. Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm. Proceedings of the National Academy of Sciences of the United States of America. 109: 3938-43. PMID 22345560 DOI: 10.1073/pnas.1117815109  0.01
2012 Duan CG, Fang YY, Zhou BJ, Zhao JH, Hou WN, Zhu H, Ding SW, Guo HS. Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein. The Plant Cell. 24: 259-74. PMID 22247253 DOI: 10.1105/Tpc.111.092718  0.01
2011 Ding SW, Lu R. Virus-derived siRNAs and piRNAs in immunity and pathogenesis. Current Opinion in Virology. 1: 533-44. PMID 22180767 DOI: 10.1016/J.Coviro.2011.10.028  0.01
2011 Han YH, Luo YJ, Wu Q, Jovel J, Wang XH, Aliyari R, Han C, Li WX, Ding SW. RNA-based immunity terminates viral infection in adult Drosophila in the absence of viral suppression of RNA interference: characterization of viral small interfering RNA populations in wild-type and mutant flies. Journal of Virology. 85: 13153-63. PMID 21957285 DOI: 10.1128/Jvi.05518-11  0.01
2011 Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. The Plant Cell. 23: 1625-38. PMID 21467580 DOI: 10.1105/Tpc.110.082305  0.01
2010 Ding SW. RNA-based antiviral immunity. Nature Reviews. Immunology. 10: 632-44. PMID 20706278 DOI: 10.1038/Nri2824  1
2010 Wu Q, Wang X, Ding SW. Viral suppressors of RNA-based viral immunity: host targets. Cell Host & Microbe. 8: 12-5. PMID 20638637 DOI: 10.1016/J.Chom.2010.06.009  0.01
2010 Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Research. 38: 5844-50. PMID 20448024 DOI: 10.1093/Nar/Gkq348  1
2010 Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, ... ... Ding SW, et al. Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. Plos Pathogens. 6: e1000764. PMID 20169186 DOI: 10.1371/Journal.Ppat.1000764  1
2010 Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li WX, Ding SW. Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs Proceedings of the National Academy of Sciences of the United States of America. 107: 1606-1611. PMID 20080648 DOI: 10.1073/Pnas.0911353107  1
2010 Wang XB, Wu Q, Ito T, Cillo F, Li WX, Chen X, Yu JL, Ding SW. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 484-9. PMID 19966292 DOI: 10.1073/Pnas.0904086107  0.01
2009 Elkashef S, Ding SW. Possible new RNA intermediate in RNA silencing. Nature Chemical Biology. 5: 278-9. PMID 19377452 DOI: 10.1038/Nchembio0509-278  1
2009 Lu R, Yigit E, Li WX, Ding SW. An RIG-I-Like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans. Plos Pathogens. 5: e1000286. PMID 19197349 DOI: 10.1371/Journal.Ppat.1000286  0.01
2009 Aliyari R, Ding SW. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunological Reviews. 227: 176-88. PMID 19120484 DOI: 10.1111/J.1600-065X.2008.00722.X  0.08
2008 Aliyari R, Wu Q, Li HW, Wang XH, Li F, Green LD, Han CS, Li WX, Ding SW. Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila. Cell Host & Microbe. 4: 387-97. PMID 18854242 DOI: 10.1016/J.Chom.2008.09.001  0.04
2008 Meng C, Chen J, Ding SW, Peng J, Wong SM. Hibiscus chlorotic ringspot virus coat protein inhibits trans-acting small interfering RNA biogenesis in Arabidopsis. The Journal of General Virology. 89: 2349-58. PMID 18753245 DOI: 10.1099/Vir.0.2008/002170-0  0.04
2008 Díaz-Pendón JA, Ding SW. Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annual Review of Phytopathology. 46: 303-26. PMID 18680427 DOI: 10.1146/Annurev.Phyto.46.081407.104746  0.01
2007 Ding SW, Voinnet O. Antiviral immunity directed by small RNAs. Cell. 130: 413-26. PMID 17693253 DOI: 10.1016/J.Cell.2007.07.039  0.01
2007 Diaz-Pendon JA, Li F, Li WX, Ding SW. Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. The Plant Cell. 19: 2053-63. PMID 17586651 DOI: 10.1105/Tpc.106.047449  0.01
2006 Roy G, Sudarshana MR, Ullman DE, Ding SW, Dandekar AM, Falk BW. Chimeric cDNA Sequences from Citrus tristeza virus Confer RNA Silencing-Mediated Resistance in Transgenic Nicotiana benthamiana Plants. Phytopathology. 96: 819-27. PMID 18943746 DOI: 10.1094/Phyto-96-0819  0.01
2006 Li F, Ding SW. Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annual Review of Microbiology. 60: 503-31. PMID 16768647 DOI: 10.1146/Annurev.Micro.60.080805.142205  0.04
2006 Wang XH, Aliyari R, Li WX, Li HW, Kim K, Carthew R, Atkinson P, Ding SW. RNA interference directs innate immunity against viruses in adult Drosophila. Science (New York, N.Y.). 312: 452-4. PMID 16556799 DOI: 10.1126/Science.1125694  1
2005 Li HW, Ding SW. Antiviral silencing in animals. Febs Letters. 579: 5965-73. PMID 16154568 DOI: 10.1016/J.Febslet.2005.08.034  0.01
2005 Ding SW. RNAi: Mechanisms, biology and applications Febs Letters. 579: 5821. DOI: 10.1016/J.Febslet.2005.08.036  1
2004 Lu R, Folimonov A, Shintaku M, Li WX, Falk BW, Dawson WO, Ding SW. Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proceedings of the National Academy of Sciences of the United States of America. 101: 15742-7. PMID 15505219 DOI: 10.1073/Pnas.0404940101  1
2004 Chen J, Li WX, Xie D, Peng JR, Ding SW. Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microrna in host gene expression. The Plant Cell. 16: 1302-13. PMID 15100397 DOI: 10.1105/tpc.018986  0.04
2004 Ding SW, Li H, Lu R, Li F, Li WX. RNA silencing: a conserved antiviral immunity of plants and animals. Virus Research. 102: 109-15. PMID 15068886 DOI: 10.1016/J.Virusres.2004.01.021  0.01
2004 Li WX, Li H, Lu R, Li F, Dus M, Atkinson P, Brydon EW, Johnson KL, García-Sastre A, Ball LA, Palese P, Ding SW. Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing. Proceedings of the National Academy of Sciences of the United States of America. 101: 1350-5. PMID 14745017 DOI: 10.1073/Pnas.0308308100  1
2003 Xin HW, Ding SW. Identification and molecular characterization of a naturally occurring RNA virus mutant defective in the initiation of host recovery. Virology. 317: 253-62. PMID 14698664 DOI: 10.1016/J.Virol.2003.08.009  0.01
2002 Liang XZ, Lucy AP, Ding SW, Wong SM. The p23 protein of hibiscus chlorotic ringspot virus is indispensable for host-specific replication. Journal of Virology. 76: 12312-9. PMID 12414971 DOI: 10.1128/Jvi.76.23.12312-12319.2002  0.01
2002 Mlotshwa S, Voinnet O, Mette MF, Matzke M, Vaucheret H, Ding SW, Pruss G, Vance VB. RNA silencing and the mobile silencing signal. The Plant Cell. 14: S289-301. PMID 12045284 DOI: 10.1105/Tpc.001677  1
2002 Li H, Li WX, Ding SW. Induction and suppression of RNA silencing by an animal virus. Science (New York, N.Y.). 296: 1319-21. PMID 12016316 DOI: 10.1126/science.1070948  0.01
2002 Guo HS, Ding SW. A viral protein inhibits the long range signaling activity of the gene silencing signal. The Embo Journal. 21: 398-407. PMID 11823432 DOI: 10.1093/emboj/21.3.398  0.01
2001 Ji L, Ding S. The suppressor of transgene RNA silencing encoded by Cucumber mosaic virus interferes with salicylic acid-mediated virus resistance. Molecular Plant-Microbe Interactions. 14: 715-724. PMID 11386367 DOI: 10.1094/Mpmi.2001.14.6.715  0.12
2000 Lucy AP, Guo H, Li W, Ding S. Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus. The Embo Journal. 19: 1672-1680. PMID 10747034 DOI: 10.1093/Emboj/19.7.1672  0.01
1999 Li H, Lucy AP, Guo H, Li W, Ji L, Wong S, Ding S. Strong host resistance targeted against a viral suppressor of the plant gene silencing defence mechanism The Embo Journal. 18: 2683-2691. PMID 10329615 DOI: 10.1093/Emboj/18.10.2683  0.04
1998 Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW, Baulcombe DC. Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana Embo Journal. 17: 6739-6746. PMID 9822616 DOI: 10.1093/Emboj/17.22.6739  1
1998 Xin HW, Ji LH, Scott SW, Symons RH, Ding SW. Ilarviruses encode a Cucumovirus-like 2b gene that is absent in other genera within the Bromoviridae. Journal of Virology. 72: 6956-9. PMID 9658153 DOI: 10.1128/Jvi.72.8.6956-6959.1998  1
1996 Ding SW, Shi BJ, Li WX, Symons RH. An interspecies hybrid RNA virus is significantly more virulent than either parental virus. Proceedings of the National Academy of Sciences of the United States of America. 93: 7470-4. PMID 8755497 DOI: 10.1073/Pnas.93.15.7470  0.04
1995 Ding S, Li W, Symons RH. A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement. The Embo Journal. 14: 5762-5772. DOI: 10.1002/J.1460-2075.1995.Tb00265.X  0.01
1994 Ding SW, Anderson BJ, Haase HR, Symons RH. New overlapping gene encoded by the cucumber mosaic virus genome. Virology. 198: 593-601. PMID 8291242 DOI: 10.1006/Viro.1994.1071  0.01
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