Fitnat H. Yildiz - Publications

University of California, Santa Cruz, Santa Cruz, CA, United States 
Microbiology Biology, Genetics, Molecular Biology

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zamorano-Sánchez D, Xian W, Lee CK, Salinas M, Thongsomboon W, Cegelski L, Wong GCL, Yildiz FH. Functional Specialization in Diguanylate Cyclases: Distinct Modes of Motility Suppression and c-di-GMP Production. Mbio. 10. PMID 31015332 DOI: 10.1128/mBio.00670-19  0.48
2018 Cheng AT, Zamorano-Sánchez D, Teschler JK, Wu D, Yildiz FH. NtrC adds a new node to the complex regulatory network of biofilm formation and expression in Journal of Bacteriology. PMID 29735756 DOI: 10.1128/JB.00025-18  0.48
2017 Conner JG, Zamorano-Sánchez D, Park JH, Sondermann H, Yildiz FH. The ins and outs of cyclic di-GMP signaling in Vibrio cholerae. Current Opinion in Microbiology. 36: 20-29. PMID 28171809 DOI: 10.1016/j.mib.2017.01.002  0.48
2016 Wang YC, Chin KH, Tu ZL, He J, Jones CJ, Sanchez DZ, Yildiz FH, Galperin MY, Chou SH. Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain. Nature Communications. 7: 12481. PMID 27578558 DOI: 10.1038/ncomms12481  0.48
2016 Satchell KJ, Jones CJ, Wong J, Queen J, Agarwal S, Yildiz FH. Phenotypic analysis reveals Haiti cholera epidemic linked to hypervirulent strain. Infection and Immunity. PMID 27297393 DOI: 10.1128/IAI.00189-16  0.48
2016 Conner JG, Teschler JK, Jones CJ, Yildiz FH. Staying Alive: Vibrio cholerae's Cycle of Environmental Survival, Transmission, and Dissemination. Microbiology Spectrum. 4. PMID 27227302 DOI: 10.1128/microbiolspec.VMBF-0015-2015  0.48
2016 Sanchez LM, Cheng AT, Warner CJ, Townsley L, Peach KC, Navarro G, Shikuma NJ, Bray WM, Riener RM, Yildiz FH, Linington RG. Biofilm Formation and Detachment in Gram-Negative Pathogens Is Modulated by Select Bile Acids. Plos One. 11: e0149603. PMID 26992172 DOI: 10.1371/journal.pone.0149603  0.48
2016 Bennett RR, Lee CK, De Anda J, Nealson KH, Yildiz FH, O'Toole GA, Wong GC, Golestanian R. Species-dependent hydrodynamics of flagellum-tethered bacteria in early biofilm development. Journal of the Royal Society, Interface / the Royal Society. 13. PMID 26864892 DOI: 10.1098/rsif.2015.0966  0.48
2016 Rogers A, Townsley L, Gallego-Hernandez AL, Beyhan S, Kwuan L, Yildiz FH. The LonA Protease Regulates Biofilm Formation, Motility, Virulence, and the Type VI Secretion System in Vibrio cholerae. Journal of Bacteriology. 198: 973-85. PMID 26755629 DOI: 10.1128/JB.00741-15  0.52
2015 Roelofs KG, Jones CJ, Helman SR, Shang X, Orr MW, Goodson JR, Galperin MY, Yildiz FH, Lee VT. Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems. Plos Pathogens. 11: e1005232. PMID 26506097 DOI: 10.1371/journal.ppat.1005232  0.48
2015 Jones CJ, Utada A, Davis KR, Thongsomboon W, Zamorano Sanchez D, Banakar V, Cegelski L, Wong GC, Yildiz FH. C-di-GMP Regulates Motile to Sessile Transition by Modulating MshA Pili Biogenesis and Near-Surface Motility Behavior in Vibrio cholerae. Plos Pathogens. 11: e1005068. PMID 26505896 DOI: 10.1371/journal.ppat.1005068  0.48
2015 Ruhe ZC, Townsley L, Wallace AB, King A, Van der Woude MW, Low DA, Yildiz FH, Hayes CS. CdiA promotes receptor-independent intercellular adhesion. Molecular Microbiology. PMID 26135212 DOI: 10.1111/mmi.13114  0.48
2015 Fong JN, Yildiz FH. Biofilm Matrix Proteins. Microbiology Spectrum. 3. PMID 26104709 DOI: 10.1128/microbiolspec.MB-0004-2014  0.48
2015 Cheng AT, Ottemann KM, Yildiz FH. Vibrio cholerae Response Regulator VxrB Controls Colonization and Regulates the Type VI Secretion System. Plos Pathogens. 11: e1004933. PMID 26000450 DOI: 10.1371/journal.ppat.1004933  0.48
2015 Teschler JK, Zamorano-Sánchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH. Living in the matrix: assembly and control of Vibrio cholerae biofilms. Nature Reviews. Microbiology. 13: 255-68. PMID 25895940 DOI: 10.1038/nrmicro3433  0.48
2015 Townsley L, Yildiz FH. Temperature affects c-di-GMP signalling and biofilm formation in Vibrio cholerae. Environmental Microbiology. 17: 4290-305. PMID 25684220 DOI: 10.1111/1462-2920.12799  0.48
2015 Zamorano-Sánchez D, Fong JC, Kilic S, Erill I, Yildiz FH. Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae. Journal of Bacteriology. 197: 1221-35. PMID 25622616 DOI: 10.1128/JB.02439-14  0.48
2015 Bilecen K, Fong JC, Cheng A, Jones CJ, Zamorano-Sánchez D, Yildiz FH. Polymyxin B resistance and biofilm formation in Vibrio cholerae are controlled by the response regulator CarR. Infection and Immunity. 83: 1199-209. PMID 25583523 DOI: 10.1128/IAI.02700-14  0.48
2015 Warner CJ, Cheng AT, Yildiz FH, Linington RG. Development of benzo[1,4]oxazines as biofilm inhibitors and dispersal agents against Vibrio cholerae. Chemical Communications (Cambridge, England). 51: 1305-8. PMID 25479128 DOI: 10.1039/c4cc07003h  0.48
2014 Hollenbeck EC, Fong JC, Lim JY, Yildiz FH, Fuller GG, Cegelski L. Molecular determinants of mechanical properties of V. cholerae biofilms at the air-liquid interface. Biophysical Journal. 107: 2245-52. PMID 25418293 DOI: 10.1016/j.bpj.2014.10.015  0.48
2014 Johnson TL, Fong JC, Rule C, Rogers A, Yildiz FH, Sandkvist M. The Type II secretion system delivers matrix proteins for biofilm formation by Vibrio cholerae. Journal of Bacteriology. 196: 4245-52. PMID 25266381 DOI: 10.1128/JB.01944-14  0.48
2014 Song T, Sabharwal D, Gurung JM, Cheng AT, Sjöström AE, Yildiz FH, Uhlin BE, Wai SN. Vibrio cholerae utilizes direct sRNA regulation in expression of a biofilm matrix protein. Plos One. 9: e101280. PMID 25054332 DOI: 10.1371/journal.pone.0101280  0.48
2014 Navarro G, Cheng AT, Peach KC, Bray WM, Bernan VS, Yildiz FH, Linington RG. Image-based 384-well high-throughput screening method for the discovery of skyllamycins A to C as biofilm inhibitors and inducers of biofilm detachment in Pseudomonas aeruginosa. Antimicrobial Agents and Chemotherapy. 58: 1092-9. PMID 24295976 DOI: 10.1128/AAC.01781-13  0.48
2013 Peach KC, Cheng AT, Oliver AG, Yildiz FH, Linington RG. Discovery and biological characterization of the auromomycin chromophore as an inhibitor of biofilm formation in Vibrio cholerae. Chembiochem : a European Journal of Chemical Biology. 14: 2209-15. PMID 24106077 DOI: 10.1002/cbic.201300131  0.48
2013 Giglio KM, Fong JC, Yildiz FH, Sondermann H. Structural basis for biofilm formation via the Vibrio cholerae matrix protein RbmA. Journal of Bacteriology. 195: 3277-86. PMID 23687270 DOI: 10.1128/JB.00374-13  0.48
2013 León B, Fong JC, Peach KC, Wong WR, Yildiz FH, Linington RG. Development of quinoline-based disruptors of biofilm formation against Vibrio cholerae. Organic Letters. 15: 1234-7. PMID 23461487 DOI: 10.1021/ol400150z  0.48
2013 Shikuma NJ, Davis KR, Fong JN, Yildiz FH. The transcriptional regulator, CosR, controls compatible solute biosynthesis and transport, motility and biofilm formation in Vibrio cholerae. Environmental Microbiology. 15: 1387-99. PMID 22690884 DOI: 10.1111/j.1462-2920.2012.02805.x  0.48
2012 Berk V, Fong JC, Dempsey GT, Develioglu ON, Zhuang X, Liphardt J, Yildiz FH, Chu S. Molecular architecture and assembly principles of Vibrio cholerae biofilms. Science (New York, N.Y.). 337: 236-9. PMID 22798614 DOI: 10.1126/science.1222981  0.48
2012 Shikuma NJ, Fong JC, Yildiz FH. Cellular levels and binding of c-di-GMP control subcellular localization and activity of the Vibrio cholerae transcriptional regulator VpsT. Plos Pathogens. 8: e1002719. PMID 22654664 DOI: 10.1371/journal.ppat.1002719  0.48
2012 Sondermann H, Shikuma NJ, Yildiz FH. You've come a long way: c-di-GMP signaling. Current Opinion in Microbiology. 15: 140-6. PMID 22226607 DOI: 10.1016/j.mib.2011.12.008  0.48
2011 Samayoa J, Yildiz FH, Karplus K. Identification of prokaryotic small proteins using a comparative genomic approach. Bioinformatics (Oxford, England). 27: 1765-71. PMID 21551138 DOI: 10.1093/bioinformatics/btr275  0.48
2011 Peach KC, Bray WM, Shikuma NJ, Gassner NC, Lokey RS, Yildiz FH, Linington RG. An image-based 384-well high-throughput screening method for the discovery of biofilm inhibitors in Vibrio cholerae. Molecular Biosystems. 7: 1176-84. PMID 21246108 DOI: 10.1039/c0mb00276c  0.48
2010 Liu X, Beyhan S, Lim B, Linington RG, Yildiz FH. Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae. Journal of Bacteriology. 192: 4541-52. PMID 20622061 DOI: 10.1128/JB.00209-10  0.48
2010 Fong JC, Syed KA, Klose KE, Yildiz FH. Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis. Microbiology (Reading, England). 156: 2757-69. PMID 20466768 DOI: 10.1099/mic.0.040196-0  0.48
2010 Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H. Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science (New York, N.Y.). 327: 866-8. PMID 20150502 DOI: 10.1126/science.1181185  0.48
2009 Sikora AE, Beyhan S, Bagdasarian M, Yildiz FH, Sandkvist M. Cell envelope perturbation induces oxidative stress and changes in iron homeostasis in Vibrio cholerae. Journal of Bacteriology. 191: 5398-408. PMID 19542276 DOI: 10.1128/JB.00092-09  0.48
2009 Shikuma NJ, Fong JCN, Odell LS, Perchuk BS, Laub MT, Yildiz FH. Overexpression of VpsS, a hybrid sensor kinase, enhances biofilm formation in Vibrio cholerae Journal of Bacteriology. 191: 5147-5158. PMID 19525342 DOI: 10.1128/JB.00401-09  0.48
2009 Bilecen K, Yildiz FH. Identification of a calcium-controlled negative regulatory system affecting Vibrio cholerae biofilm formation. Environmental Microbiology. 11: 2015-29. PMID 19397680 DOI: 10.1111/j.1462-2920.2009.01923.x  1
2009 Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH. Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae. Journal of Bacteriology. 191: 3504-16. PMID 19329638 DOI: 10.1128/JB.01240-08  0.48
2009 Shikuma NJ, Yildiz FH. Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae. Journal of Bacteriology. 191: 4082-96. PMID 19329635 DOI: 10.1128/JB.01540-08  0.84
2009 Yildiz FH, Visick KL. Vibrio biofilms: so much the same yet so different. Trends in Microbiology. 17: 109-18. PMID 19231189 DOI: 10.1016/j.tim.2008.12.004  0.48
2008 Beyhan S, Odell LS, Yildiz FH. Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae. Journal of Bacteriology. 190: 7392-405. PMID 18790873 DOI: 10.1128/JB.00564-08  0.52
2007 Beyhan S, Yildiz FH. Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway. Molecular Microbiology. 63: 995-1007. PMID 17233827 DOI: 10.1111/j.1365-2958.2006.05568.x  0.52
2007 Lim B, Beyhan S, Yildiz FH. Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae. Journal of Bacteriology. 189: 717-29. PMID 17122338 DOI: 10.1128/JB.00834-06  0.52
2007 Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH. Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR. Journal of Bacteriology. 189: 388-402. PMID 17071756 DOI: 10.1128/JB.00981-06  1
2006 Beyhan S, Tischler AD, Camilli A, Yildiz FH. Differences in gene expression between the classical and El Tor biotypes of Vibrio cholerae O1. Infection and Immunity. 74: 3633-42. PMID 16714595 DOI: 10.1128/IAI.01750-05  0.52
2006 Beyhan S, Tischler AD, Camilli A, Yildiz FH. Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level. Journal of Bacteriology. 188: 3600-13. PMID 16672614 DOI: 10.1128/JB.188.10.3600-3613.2006  0.52
2006 Lim B, Beyhan S, Meir J, Yildiz FH. Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation. Molecular Microbiology. 60: 331-48. PMID 16573684 DOI: 10.1111/j.1365-2958.2006.05106.x  0.52
2006 Fong JC, Karplus K, Schoolnik GK, Yildiz FH. Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae. Journal of Bacteriology. 188: 1049-59. PMID 16428409 DOI: 10.1128/JB.188.3.1049-1059.2006  0.48
2005 Matz C, McDougald D, Moreno AM, Yung PY, Yildiz FH, Kjelleberg S. Biofilm formation and phenotypic variation enhance predation-driven persistence of Vibrio cholerae Proceedings of the National Academy of Sciences of the United States of America. 102: 16819-16824. PMID 16267135 DOI: 10.1073/pnas.0505350102  0.48
2004 Yildiz FH, Liu XS, Heydorn A, Schoolnik GK. Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant. Molecular Microbiology. 53: 497-515. PMID 15228530 DOI: 10.1111/j.1365-2958.2004.04154.x  0.48
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