Heather R. McManus, Ph.D. - Related publications

Affiliations: 
2011 Harvard University, Cambridge, MA, United States 
Area:
Microbiology Biology, Molecular Biology, Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zinani OQH, Keseroğlu K, Özbudak EM. Regulatory mechanisms ensuring coordinated expression of functionally related genes. Trends in Genetics : Tig. PMID 34376301 DOI: 10.1016/j.tig.2021.07.008   
2021 Wang L, Li JH, Huang HY, Wu Q. [Serial deletions of tandem reverse CTCF sites reveal balanced regulatory landscape of enhancers]. Yi Chuan = Hereditas. 43: 775-791. PMID 34413017 DOI: 10.16288/j.yczz.21-132   
2021 Gaudet P, Logie C, Lovering RC, Kuiper M, Lægreid A, Thomas PD. Gene Ontology representation for transcription factor functions. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194752. PMID 34461313 DOI: 10.1016/j.bbagrm.2021.194752   
2021 Payankaulam S, Hickey SL, Arnosti DN. Cell cycle expression of polarity genes features Rb targeting of Vang. Cells & Development. 169: 203747. PMID 34583062 DOI: 10.1016/j.cdev.2021.203747   
2021 Sanson MA, Vega LA, Shah B, Regmi S, Cubria MB, Horstmann N, Shelburne SA, Flores AR. The LiaFSR transcriptome reveals an interconnected regulatory network in group A . Infection and Immunity. IAI0021521. PMID 34370508 DOI: 10.1128/IAI.00215-21   
2021 Rodionova IA, Gao Y, Sastry A, Hefner Y, Lim HG, Rodionov DA, Saier MH, Palsson BO. Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. Communications Biology. 4: 991. PMID 34413462 DOI: 10.1038/s42003-021-02516-0   
2021 Meléndez-Ramírez C, Cuevas-Diaz Duran R, Barrios-García T, Giacoman-Lozano M, López-Ornelas A, Herrera-Gamboa J, Estudillo E, Soto-Reyes E, Velasco I, Treviño V. Dynamic landscape of chromatin accessibility and transcriptomic changes during differentiation of human embryonic stem cells into dopaminergic neurons. Scientific Reports. 11: 16977. PMID 34417498 DOI: 10.1038/s41598-021-96263-1   
2021 Mwapagha LM, Chibanga V, Shipanga H, Parker MI. New insights from Whole Genome Sequencing: BCLAF1 deletion as a structural variant that predisposes cells towards cellular transformation. Oncology Reports. 46. PMID 34490482 DOI: 10.3892/or.2021.8180   
2021 Singh NP. Gene regulation: Context is everything. Current Biology : Cb. 31: R1115-R1117. PMID 34637709 DOI: 10.1016/j.cub.2021.08.064   
2021 Zou Q, Qi H. Deletion of ribosomal paralogs Rpl39 and Rpl39l compromises cell proliferation via protein synthesis and mitochondrial activity. The International Journal of Biochemistry & Cell Biology. 139: 106070. PMID 34428590 DOI: 10.1016/j.biocel.2021.106070   
2021 Grieshaber NA, Runac J, Turner S, Dean M, Appa C, Omsland A, Grieshaber SS. The sRNA Regulated Protein DdbA Is Involved in Development and Maintenance of the Chlamydia trachomatis EB Cell Form. Frontiers in Cellular and Infection Microbiology. 11: 692224. PMID 34368013 DOI: 10.3389/fcimb.2021.692224   
2021 Chung H, Parkhurst CN, Magee EM, Phillips D, Habibi E, Chen F, Yeung BZ, Waldman J, Artis D, Regev A. Joint single-cell measurements of nuclear proteins and RNA in vivo. Nature Methods. 18: 1204-1212. PMID 34608310 DOI: 10.1038/s41592-021-01278-1   
2021 Thomas AL, Marsman J, Antony J, Schierding W, O'Sullivan JM, Horsfield JA. Transcriptional Regulation of : An Informatics Analysis. Genes. 12. PMID 34440349 DOI: 10.3390/genes12081175   
2021 Channappa M, Sharma S, Kulshreshtha D, Singh K, Bhardwaj SC, Murugasamy S, Sindhu A, Vikas VK, Aggarwal R. Transcriptome profiling and differential gene expression analysis provides insights into 24-based resistance in wheat against . 3 Biotech. 11: 455. PMID 34631354 DOI: 10.1007/s13205-021-02972-9   
2021 Gong L, Liu X, Wu J, He M. Emerging strategies for the genetic dissection of gene functions, cell types, and neural circuits in the mammalian brain. Molecular Psychiatry. PMID 34561609 DOI: 10.1038/s41380-021-01292-x   
2021 Zhao K, Kong D, Jin B, Smolke CD, Rhee SY. A novel form of bivalent chromatin associates with rapid induction of camalexin biosynthesis genes in response to a pathogen signal in Arabidopsis. Elife. 10. PMID 34523419 DOI: 10.7554/eLife.69508   
2021 Goszczynski DE, Tinetti PS, Choi YH, Hinrichs K, Ross PJ. Genome activation in equine in vitro-produced embryos. Biology of Reproduction. PMID 34515744 DOI: 10.1093/biolre/ioab173   
2021 Huang J, Zhang Q, He Y, Liu W, Xu Y, Liu K, Xian F, Li J, Hu J. Genome-Wide Identification, Expansion Mechanism and Expression Profiling Analysis of   Gene Family in Gramineae Crops. International Journal of Molecular Sciences. 22. PMID 34445464 DOI: 10.3390/ijms22168758   
2021 Xia S, Ventura IM, Blaha A, Sgromo A, Han S, Izaurralde E, Long M. Rapid Gene evolution in an ancient post-transcriptional and translational regulatory system compensates for meiotic X chromosomal inactivation. Molecular Biology and Evolution. PMID 34626117 DOI: 10.1093/molbev/msab296   
2021 Callaghan MM, Klimowicz AK, Shockey AC, Kane J, Pepperell CS, Dillard JP. Transcriptional and translational responsiveness of the type IV secretion system to conditions of host infections. Infection and Immunity. IAI0051921. PMID 34581604 DOI: 10.1128/IAI.00519-21   
2021 Chun KH. Discovery of Cellular RhoA Functions by the Integrated Application of Gene Set Enrichment Analysis. Biomolecules & Therapeutics. PMID 34429388 DOI: 10.4062/biomolther.2021.075   
2021 Li Z, Yang J, Peng J, Cheng Z, Liu X, Zhang Z, Bhadauria V, Zhao W, Peng YL. Transcriptional Landscapes of Long Non-coding RNAs and Alternative Splicing in Revealed by RNA-Seq. Frontiers in Plant Science. 12: 723636. PMID 34589103 DOI: 10.3389/fpls.2021.723636   
2021 Galfrè SG, Morandin F, Pietrosanto M, Cremisi F, Helmer-Citterich M. COTAN: scRNA-seq data analysis based on gene co-expression. Nar Genomics and Bioinformatics. 3: lqab072. PMID 34396096 DOI: 10.1093/nargab/lqab072   
2021 El-Sappah AH, Yan K, Huang Q, Islam MM, Li Q, Wang Y, Khan MS, Zhao X, Mir RR, Li J, El-Tarabily KA, Abbas M. Comprehensive Mechanism of Gene Silencing and Its Role in Plant Growth and Development. Frontiers in Plant Science. 12: 705249. PMID 34589097 DOI: 10.3389/fpls.2021.705249   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J. The lncRNA Is a -Related Regulatory Element with Broad Effects on the Transcriptome. Non-Coding Rna. 7. PMID 34449676 DOI: 10.3390/ncrna7030046   
2021 Yang GH, Fontaine DA, Lodh S, Blumer JT, Roopra A, Davis DB. TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell. Metabolites. 11. PMID 34436454 DOI: 10.3390/metabo11080513   
2021 Thai SN, Lum MR, Naegle J, Onofre M, Abdulla H, Garcia A, Fiterz A, Arnell A, Lwin TT, Kavanaugh A, Hikmat Z, Garabedian N, Ngo RT, Dimaya B, Escamilla A, et al. Multiple copies of in regulate flagellar gene expression, motility, and biofilm formation. Journal of Bacteriology. JB0029321. PMID 34543106 DOI: 10.1128/JB.00293-21   
2021 Xie CD, Wang B, Shen ZJ, Yao WY, Ao H, Li B, Pei Y, Zhou R. Validation of the Reference Genes for the Gene Expression Studies in Different Cell Lines of Pig. Biomed Research International. 2021: 5364190. PMID 34458368 DOI: 10.1155/2021/5364190   
2021 Huang X, Zhang X, Zong L, Gao Q, Zhang C, Wei R, Guan Y, Huang L, Zhang L, Lyu G, Tao W. Gene body methylation safeguards ribosomal DNA transcription by preventing PHF6-mediated enrichment of repressive histone mark H4K20me3. The Journal of Biological Chemistry. 101195. PMID 34520760 DOI: 10.1016/j.jbc.2021.101195   
2021 Gandhi S, Li Y, Tang W, Christensen JB, Urrutia HA, Vieceli FM, Piacentino ML, Bronner ME. A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos. Development (Cambridge, England). 148. PMID 34437692 DOI: 10.1242/dev.193565   
2021 Laskar P, Bhattacharya S, Chaudhuri A, Kundu A. Exploring the GRAS gene family in common bean (Phaseolus vulgaris L.): characterization, evolutionary relationships, and expression analyses in response to abiotic stresses. Planta. 254: 84. PMID 34561734 DOI: 10.1007/s00425-021-03725-x   
2021 Grose C, Putman Z, Esposito D. A review of alternative promoters for optimal recombinant protein expression in baculovirus-infected insect cells. Protein Expression and Purification. 186: 105924. PMID 34087362 DOI: 10.1016/j.pep.2021.105924   
2021 Li G, Gu X, Gui S, Guo J, Yi T, Jin D. Transcriptome Analysis of Hormone-and Cuticle-Related Genes in the Development Process of Deutonymph in . Insects. 12. PMID 34442302 DOI: 10.3390/insects12080736   
2021 Nussinov R, Zhang M, Maloney R, Jang H. Ras isoform-specific expression, chromatin accessibility, and signaling. Biophysical Reviews. 13: 489-505. PMID 34466166 DOI: 10.1007/s12551-021-00817-6   
2021 Rud D, Marjoram P, Siegmund K, Shibata D. Functional human genes typically exhibit epigenetic conservation. Plos One. 16: e0253250. PMID 34520456 DOI: 10.1371/journal.pone.0253250   
2021 Liu Y, Cui S, Sun J, Yan X, Han D. Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets. Frontiers in Genetics. 12: 722803. PMID 34512732 DOI: 10.3389/fgene.2021.722803   
2021 Cuesta-Astroz Y, Gischkow Rucatti G, Murgas L, SanMartín CD, Sanhueza M, Martin AJM. Filtering of Data-Driven Gene Regulatory Networks Using as a Case Study. Frontiers in Genetics. 12: 649764. PMID 34394179 DOI: 10.3389/fgene.2021.649764   
2021 Kotarba G, Taracha-Wisniewska A, Miller M, Dabrowski M, Wilanowski T. Transcription factors Krüppel-like factor 4 and paired box 5 regulate the expression of the Grainyhead-like genes. Plos One. 16: e0257977. PMID 34570823 DOI: 10.1371/journal.pone.0257977   
2021 Da Rocha M, Bournaud C, Dazenière J, Thorpe P, Bailly-Bechet M, Pellegrin C, Péré A, Grynberg P, Perfus-Barbeoch L, Eves-van den Akker S, Danchin EGJ. Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode and a Promoter Motif Associated with Effector Genes. Genes. 12. PMID 34070210 DOI: 10.3390/genes12050771   
2021 Xu W, Liu T, Zhang H, Zhu H. Mungbean Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses. Frontiers in Genetics. 12: 658148. PMID 34630501 DOI: 10.3389/fgene.2021.658148   
2021 Das Roy R, Hallikas O, Christensen MM, Renvoisé E, Jernvall J. Chromosomal neighbourhoods allow identification of organ specific changes in gene expression. Plos Computational Biology. 17: e1008947. PMID 34506480 DOI: 10.1371/journal.pcbi.1008947   
2021 Li-Leger E, Feichtinger R, Flibotte S, Holzkamp H, Schnabel R, Moerman DG. Identification of essential genes in Caenorhabditis elegans through whole genome sequencing of legacy mutant collections. G3 (Bethesda, Md.). PMID 34550348 DOI: 10.1093/g3journal/jkab328   
2021 Cheng M, Yuan H, Wang R, Zou J, Liang T, Yang F, Li S. Genome-Wide Identification and Analysis of the Metallothionein Genes in Genus. International Journal of Molecular Sciences. 22. PMID 34502554 DOI: 10.3390/ijms22179651   
2021 Price EE, Rudra P, Norambuena J, Román-Rodríguez F, Boyd JM. Tools, strains, and strategies to effectively conduct anaerobic and aerobic transcriptional reporter screens and assays in . Applied and Environmental Microbiology. AEM0110821. PMID 34406831 DOI: 10.1128/AEM.01108-21   
2021 Singh AN, Sharma N. In-silico identification of frequently mutated genes and their co-enriched metabolic pathways associated with Prostate cancer progression. Andrologia. e14236. PMID 34468989 DOI: 10.1111/and.14236   
2021 Pio G, Mignone P, Magazzù G, Zampieri G, Ceci M, Angione C. Integrating genome-scale metabolic modelling and transfer learning for human gene regulatory network reconstruction. Bioinformatics (Oxford, England). PMID 34499112 DOI: 10.1093/bioinformatics/btab647   
2021 Fan T, Lv T, Xie C, Zhou Y, Tian C. Genome-Wide Analysis of the Gene Family in Rice ( L.). Plants (Basel, Switzerland). 10. PMID 34579481 DOI: 10.3390/plants10091949   
2021 Yang J, Li Q, Du W, Yao Y, Shen G, Jiang W, Pang Y. Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in . Plants (Basel, Switzerland). 10. PMID 34451684 DOI: 10.3390/plants10081639   
2021 Meiler A, Marchiano F, Haering M, Weitkunat M, Schnorrer F, Habermann BH. AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators. Scientific Reports. 11: 15463. PMID 34326396 DOI: 10.1038/s41598-021-94805-1