Frederick S. Colwell - Publications

Oregon State University, Corvallis, OR 
Microbiology Biology, Geobiology

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Klasek SA, Hong WL, Torres ME, Ross S, Hostetler K, Portnov A, Gründger F, Colwell FS. Distinct methane-dependent biogeochemical states in Arctic seafloor gas hydrate mounds. Nature Communications. 12: 6296. PMID 34728618 DOI: 10.1038/s41467-021-26549-5  0.439
2021 Ewton E, Klasek S, Peck E, Wiest J, Colwell F. Microbial Community Characteristics Largely Unaffected by X-Ray Computed Tomography of Sediment Cores. Frontiers in Microbiology. 12: 584676. PMID 33912140 DOI: 10.3389/fmicb.2021.584676  0.322
2020 Ohan JA, Saneiyan S, Lee J, Bartlow AW, Ntarlagiannis D, Burns SE, Colwell FS. Microbial and Geochemical Dynamics of an Aquifer Stimulated for Microbial Induced Calcite Precipitation (MICP). Frontiers in Microbiology. 11: 1327. PMID 32612598 DOI: 10.3389/Fmicb.2020.01327  0.507
2019 Klasek S, Torres ME, Bartlett DH, Tyler M, Hong WL, Colwell F. Microbial communities from Arctic marine sediments respond slowly to methane addition during ex situ enrichments. Environmental Microbiology. PMID 31840312 DOI: 10.1111/1462-2920.14895  0.559
2019 Klasek SA, Torres ME, Loher M, Bohrmann G, Pape T, Colwell FS. Deep-Sourced Fluids From a Convergent Margin Host Distinct Subseafloor Microbial Communities That Change Upon Mud Flow Expulsion. Frontiers in Microbiology. 10: 1436. PMID 31281306 DOI: 10.3389/Fmicb.2019.01436  0.514
2019 Morono Y, Wishart JR, Ito M, Ijiri A, Hoshino T, Torres M, Verba C, Terada T, Inagaki F, Colwell FS. Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered From Deep Hydrocarbon-Rich Shale. Frontiers in Microbiology. 10: 376. PMID 30915042 DOI: 10.3389/Fmicb.2019.00376  0.432
2019 Saneiyan S, Ntarlagiannis D, Ohan J, Lee J, Colwell F, Burns S. Induced polarization as a monitoring tool for in-situ microbial induced carbonate precipitation (MICP) processes Ecological Engineering. 127: 36-47. DOI: 10.1016/J.Ecoleng.2018.11.010  0.346
2018 Sheik CS, Reese BK, Twing KI, Sylvan JB, Grim SL, Schrenk MO, Sogin ML, Colwell FS. Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life. Frontiers in Microbiology. 9: 840. PMID 29780369 DOI: 10.3389/Fmicb.2018.00840  0.466
2018 Graw MF, D'Angelo G, Borchers M, Thurber AR, Johnson JE, Zhang C, Liu H, Colwell FS. Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea. Frontiers in Microbiology. 9: 729. PMID 29696012 DOI: 10.3389/Fmicb.2018.00729  0.566
2016 Harris D, Ummadi JG, Thurber AR, Allau Y, Verba C, Colwell F, Torres ME, Koley D. Real-time monitoring of calcification process by Sporosarcina pasteurii biofilm. The Analyst. PMID 26939806 DOI: 10.1039/C6An00007J  0.317
2016 Smith AR, Fisk MR, Thurber AR, Flores GE, Mason OU, Popa R, Colwell FS. Deep Crustal Communities of the Juan de Fuca Ridge Are Governed by Mineralogy Geomicrobiology Journal. 1-10. DOI: 10.1080/01490451.2016.1155001  0.464
2016 Verba C, Thurber AR, Alleau Y, Koley D, Colwell F, Torres ME. Mineral changes in cement-sandstone matrices induced by biocementation International Journal of Greenhouse Gas Control. 49: 312-322. DOI: 10.1016/J.Ijggc.2016.03.019  0.304
2015 Kieft TL, Onstott TC, Ahonen L, Aloisi V, Colwell FS, Engelen B, Fendrihan S, Gaidos E, Harms U, Head I, Kallmeyer J, Kiel Reese B, Lin LH, Long PE, Moser DP, et al. Workshop to develop deep-life continental scientific drilling projects Scientific Drilling. 19: 43-53. DOI: 10.5194/Sd-19-43-2015  0.353
2015 Li CF, Li J, Ding W, Franke D, Yao Y, Shi H, Pang X, Cao Y, Lin J, Kulhanek DK, Williams T, Bao R, Briais A, Brown EA, Chen Y, ... ... Colwell FS, et al. Seismic stratigraphy of the central South China Sea basin and implications for neotectonics Journal of Geophysical Research B: Solid Earth. 120: 1377-1399. DOI: 10.1002/2014Jb011686  0.386
2013 Orcutt BN, Larowe DE, Biddle JF, Colwell FS, Glazer BT, Reese BK, Kirkpatrick JB, Lapham LL, Mills HJ, Sylvan JB, Wankel SD, Wheat CG. Microbial activity in the marine deep biosphere: progress and prospects. Frontiers in Microbiology. 4: 189. PMID 23874326 DOI: 10.3389/Fmicb.2013.00189  0.35
2013 Connolly J, Kaufman M, Rothman A, Gupta R, Redden G, Schuster M, Colwell F, Gerlach R. Construction of two ureolytic model organisms for the study of microbially induced calcium carbonate precipitation. Journal of Microbiological Methods. 94: 290-9. PMID 23835134 DOI: 10.1016/J.Mimet.2013.06.028  0.353
2013 Lavalleur HJ, Colwell FS. Microbial characterization of basalt formation waters targeted for geological carbon sequestration. Fems Microbiology Ecology. 85: 62-73. PMID 23418786 DOI: 10.1111/1574-6941.12098  0.511
2013 Briggs BR, Graw M, Brodie EL, Bahk JJ, Kim SH, Hyun JH, Kim JH, Torres M, Colwell FS. Microbial distributions detected by an oligonucleotide microarray across geochemical zones associated with methane in marine sediments from the Ulleung Basin Marine and Petroleum Geology. 47: 147-154. DOI: 10.1016/J.Marpetgeo.2013.02.015  0.744
2012 Briggs BR, Inagaki F, Morono Y, Futagami T, Huguet C, Rosell-Mele A, Lorenson TD, Colwell FS. Bacterial dominance in subseafloor sediments characterized by methane hydrates. Fems Microbiology Ecology. 81: 88-98. PMID 22273405 DOI: 10.1111/J.1574-6941.2012.01311.X  0.746
2012 Edwards KJ, Becker K, Colwell F. The deep, dark energy biosphere: Intraterrestrial life on earth Annual Review of Earth and Planetary Sciences. 40: 551-568. DOI: 10.1146/Annurev-Earth-042711-105500  0.33
2011 Briggs BR, Pohlman JW, Torres M, Riedel M, Brodie EL, Colwell FS. Macroscopic biofilms in fracture-dominated sediment that anaerobically oxidize methane. Applied and Environmental Microbiology. 77: 6780-7. PMID 21821755 DOI: 10.1128/Aem.00288-11  0.714
2011 Paszczynski AJ, Paidisetti R, Johnson AK, Crawford RL, Colwell FS, Green T, Delwiche M, Lee H, Newby D, Brodie EL, Conrad M. Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase. Biodegradation. 22: 1045-59. PMID 21360114 DOI: 10.1007/S10532-011-9462-4  0.445
2011 Colwell F, Schwartz A, Briggs B. Microbial community distribution in sediments from the Mount Elbert Gas Hydrate Stratigraphic Test Well, Alaska North Slope Marine and Petroleum Geology. 28: 404-410. DOI: 10.1016/J.Marpetgeo.2009.12.012  0.734
2010 Bozarth CS, Schwartz AD, Shepardson JW, Colwell FS, Dreher TW. Population turnover in a Microcystis bloom results in predominantly nontoxigenic variants late in the season. Applied and Environmental Microbiology. 76: 5207-13. PMID 20543038 DOI: 10.1128/Aem.00001-10  0.353
2010 Conrad ME, Brodie EL, Radtke CW, Bill M, Delwiche ME, Lee MH, Swift DL, Colwell FS. Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater. Environmental Science & Technology. 44: 4697-704. PMID 20476753 DOI: 10.1021/Es903535J  0.398
2008 Nunoura T, Inagaki F, Delwiche ME, Colwell FS, Takai K. Subseafloor microbial communities in methane hydrate-bearing sediment at two distinct locations (ODP Leg204) in the cascadia margin. Microbes and Environments / Jsme. 23: 317-25. PMID 21558725 DOI: 10.1264/Jsme2.Me08514  0.556
2008 Caldwell SL, Laidler JR, Brewer EA, Eberly JO, Sandborgh SC, Colwell FS. Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms. Environmental Science & Technology. 42: 6791-9. PMID 18853791 DOI: 10.1021/Es800120B  0.502
2008 Fujita Y, Taylor JL, Gresham TL, Delwiche ME, Colwell FS, Mcling TL, Petzke LM, Smith RW. Stimulation of microbial urea hydrolysis in groundwater to enhance calcite precipitation. Environmental Science & Technology. 42: 3025-32. PMID 18497161 DOI: 10.1021/Es702643G  0.44
2008 Colwell FS, Boyd S, Delwiche ME, Reed DW, Phelps TJ, Newby DT. Estimates of biogenic methane production rates in deep marine sediments at Hydrate Ridge, Cascadia margin. Applied and Environmental Microbiology. 74: 3444-52. PMID 18344348 DOI: 10.1128/Aem.02114-07  0.485
2007 Wymore RA, Hope Lee M, Keener WK, Miller AR, Colwell FS, Watwood ME, Sorenson KS. Field evidence for intrinsic aerobic chlorinated ethene cometabolism by methanotrophs expressing soluble methane monooxygenase Bioremediation Journal. 11: 125-139. DOI: 10.1080/10889860701548614  0.404
2007 Gresham TLT, Sheridan PP, Watwood ME, Fujita Y, Colwell FS. Design and validation of ureC-based primers for groundwater detection of urea-hydrolyzing bacteria Geomicrobiology Journal. 24: 353-364. DOI: 10.1080/01490450701459283  0.394
2006 Inagaki F, Nunoura T, Nakagawa S, Teske A, Lever M, Lauer A, Suzuki M, Takai K, Delwiche M, Colwell FS, Nealson KH, Horikoshi K, D'Hondt S, Jørgensen BB. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proceedings of the National Academy of Sciences of the United States of America. 103: 2815-20. PMID 16477011 DOI: 10.1073/Pnas.0511033103  0.566
2005 Erwin DP, Erickson IK, Delwiche ME, Colwell FS, Strap JL, Crawford RL. Diversity of oxygenase genes from methane- and ammonia-oxidizing bacteria in the Eastern Snake River Plain aquifer. Applied and Environmental Microbiology. 71: 2016-25. PMID 15812034 DOI: 10.1128/Aem.71.4.2016-2025.2005  0.451
2004 Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach AL, Kieft TL, Colwell FS. Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in Situ Geomicrobiology Journal. 21: 169-182. DOI: 10.1080/01490450490275848  0.478
2004 Colwell F, Matsumoto R, Reed D. A review of the gas hydrates, geology, and biology of the Nankai Trough Chemical Geology. 205: 391-404. DOI: 10.1016/J.Chemgeo.2003.12.023  0.554
2003 O'Connell SP, Lehman RM, Snoeyenbos-West O, Winston VD, Cummings DE, Watwood ME, Colwell FS. Detection of Euryarchaeota and Crenarchaeota in an oxic basalt aquifer. Fems Microbiology Ecology. 44: 165-73. PMID 19719634 DOI: 10.1016/S0168-6496(02)00465-8  0.412
2003 Sebat JL, Colwell FS, Crawford RL. Metagenomic profiling: microarray analysis of an environmental genomic library. Applied and Environmental Microbiology. 69: 4927-34. PMID 12902288 DOI: 10.1128/Aem.69.8.4927-4934.2003  0.381
2003 Mikucki JA, Liu Y, Delwiche M, Colwell FS, Boone DR. Isolation of a methanogen from deep marine sediments that contain methane hydrates, and description of Methanoculleus submarinus sp. nov. Applied and Environmental Microbiology. 69: 3311-6. PMID 12788731 DOI: 10.1128/Aem.69.6.3311-3316.2003  0.418
2002 Reed DW, Fujita Y, Delwiche ME, Blackwelder DB, Sheridan PP, Uchida T, Colwell FS. Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Applied and Environmental Microbiology. 68: 3759-70. PMID 12147470 DOI: 10.1128/Aem.68.8.3759-3770.2002  0.596
2001 Lehman RM, Colwell FS, Bala GA. Attached and Unattached Microbial Communities in a Simulated Basalt Aquifer under Fracture- and Porous-Flow Conditions Applied and Environmental Microbiology. 67: 2799-2809. PMID 11375197 DOI: 10.1128/Aem.67.6.2799-2809.2001  0.478
2001 Lehman RM, Roberto FF, Earley D, Bruhn DF, Brink SE, O'Connell SP, Delwiche ME, Colwell FS. Attached and unattached bacterial communities in a 120-meter corehole in an acidic, crystalline rock aquifer. Applied and Environmental Microbiology. 67: 2095-106. PMID 11319087 DOI: 10.1128/Aem.67.5.2095-2106.2001  0.528
2000 Fujita Y, Ferris F, Lawson R, Colwell F, Smith R. Subscribed Content Calcium Carbonate Precipitation by Ureolytic Subsurface Bacteria Geomicrobiology Journal. 17: 305-318. DOI: 10.1080/782198884  0.337
2000 Fujita Y, Ferris FG, Lawson RD, Colwell FS, Smith RW. Calcium carbonate precipitation by ureolytic subsurface bacteria Geomicrobiology Journal. 17: 305-318. DOI: 10.1080/01490450050193360  0.413
1999 Tobin KJ, Onstott TC, DeFlaun MF, Colwell FS, Fredrickson J. In situ imaging of microorganisms in geologic material. Journal of Microbiological Methods. 37: 201-13. PMID 10480264 DOI: 10.1016/S0167-7012(99)00044-5  0.396
1997 Fredrickson JK, McKinley JP, Bjornstad BN, Long PE, Ringelberg DB, White DC, Krumholz LR, Suflita JM, Colwell FS, Lehman RM, Phelps TJ, Onstott TC. Pore‐size constraints on the activity and survival of subsurface bacteria in a late cretaceous shale‐sandstone sequence, northwestern New Mexico Geomicrobiology Journal. 14: 183-202. DOI: 10.1080/01490459709378043  0.447
1997 Lehman RM, Colwell FS, Garland JL. Physiological profiling of indigenous aquatic microbial communities to determine toxic effects of metals Environmental Toxicology and Chemistry. 16: 2232-2241. DOI: 10.1002/Etc.5620161106  0.42
1995 Story SP, Amy PS, Bishop CW, Colwell FS. Bacterial transport in volcanic tuff cores under saturated flow conditions Geomicrobiology Journal. 13: 249-264. DOI: 10.1080/01490459509378024  0.346
1995 Lehman RM, Colwell FS, Ringelberg DB, White DC. Combined microbial community-level analyses for quality assurance of terrestrial subsurface cores Journal of Microbiological Methods. 22: 263-281. DOI: 10.1016/0167-7012(95)00012-A  0.478
1992 Colwell FS, Stormberg GJ, Phelps TJ, Birnbaum SA, McKinley J, Rawson SA, Veverka C, Goodwin S, Long PE, Russell BF, Garland T, Thompson D, Skinner P, Grover S. Innovative techniques for collection of saturated and unsaturated subsurface basalts and sediments for microbiological characterization Journal of Microbiological Methods. 15: 279-292. DOI: 10.1016/0167-7012(92)90047-8  0.464
1989 Colwell FS. Microbiological comparison of surface soil and unsaturated subsurface soil from a semiarid high desert. Applied and Environmental Microbiology. 55: 2420-2423. DOI: 10.1128/Aem.55.9.2420-2423.1989  0.368
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