Juan E. Zalapa, Ph.D. - Publications

Affiliations: 
2005 University of Wisconsin, Madison, Madison, WI 
Area:
Genetics, Plant Culture Agriculture, Molecular Biology

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yocca AE, Platts A, Alger E, Teresi S, Mengist MF, Benevenuto J, Ferrão LFV, Jacobs M, Babinski M, Magallanes-Lundback M, Bayer P, Golicz A, Humann JL, Main D, Espley RV, ... ... Zalapa J, et al. Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. Horticulture Research. 10: uhad202. PMID 38023484 DOI: 10.1093/hr/uhad202  0.348
2023 Yocca AE, Platts A, Alger E, Teresi S, Mengist MF, Benevenuto J, Felipe V Ferrão L, Jacobs M, Babinski M, Magallanes-Lundback M, Bayer P, Golicz A, Humann JL, Main D, Espley RV, ... ... Zalapa J, et al. Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. Biorxiv : the Preprint Server For Biology. PMID 37577683 DOI: 10.1101/2023.07.31.551392  0.348
2023 Lopez-Moreno H, Basurto-Garduño AC, Torres-Meraz MA, Diaz-Valenzuela E, Arellano-Arciniega S, Zalapa J, Sawers RJH, Cibrián-Jaramillo A, Diaz-Garcia L. Genetic analysis and QTL mapping of domestication-related traits in chili pepper ( L). Frontiers in Genetics. 14: 1101401. PMID 37255716 DOI: 10.3389/fgene.2023.1101401  0.488
2023 Albert NW, Iorizzo M, Mengist MF, Montanari S, Zalapa J, Maule A, Edger PP, Yocca AE, Platts AE, Pucker B, Espley RV. Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit. Plant Physiology. PMID 37129240 DOI: 10.1093/plphys/kiad250  0.318
2022 Neyhart JL, Kantar MB, Zalapa J, Vorsa N. Genomic-environmental associations in wild cranberry (Vaccinium macrocarpon Ait.). G3 (Bethesda, Md.). PMID 35944211 DOI: 10.1093/g3journal/jkac203  0.343
2022 Edger PP, Iorizzo M, Bassil NV, Benevenuto J, Ferrão LFV, Giongo L, Hummer K, Lawas LMF, Leisner CP, Li C, Munoz PR, Ashrafi H, Atucha A, Babiker EM, Canales E, ... ... Zalapa J, et al. There and back again; historical perspective and future directions for breeding and research studies. Horticulture Research. 9: uhac083. PMID 35611183 DOI: 10.1093/hr/uhac083  0.306
2021 Diaz-Garcia L, Garcia-Ortega LF, González-Rodríguez M, Delaye L, Iorizzo M, Zalapa J. Chromosome-Level Genome Assembly of the American Cranberry ( Ait.) and Its Wild Relative . Frontiers in Plant Science. 12: 633310. PMID 33643360 DOI: 10.3389/fpls.2021.633310  0.304
2020 Diaz-Garcia L, Covarrubias-Pazaran G, Johnson-Cicalese J, Vorsa N, Zalapa J. Genotyping-by-Sequencing Identifies Historical Breeding Stages of the Recently Domesticated American Cranberry. Frontiers in Plant Science. 11: 607770. PMID 33391320 DOI: 10.3389/fpls.2020.607770  0.433
2020 Dharampal PS, Diaz-Garcia L, Haase MAB, Zalapa J, Currie CR, Hittinger CT, Steffan SA. Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies. Insects. 11. PMID 32316296 DOI: 10.3390/Insects11040250  0.314
2020 Khoury CK, Greene SL, Krishnan S, Miller AJ, Moreau T, Williams KA, Rodriguez-Bonilla L, Spurrier CS, Zalapa J, Nabhan GP. Toward Integrated Conservation of North America's Crop Wild Relatives Natural Areas Journal. 40: 96. DOI: 10.3375/043.040.0111  0.343
2019 Diaz-Garcia L, Rodriguez-Bonilla L, Phillips M, Lopez-Hernandez A, Grygleski E, Atucha A, Zalapa J. Comprehensive analysis of the internal structure and firmness in American cranberry (Vaccinium macrocarpon Ait.) fruit. Plos One. 14: e0222451. PMID 31553750 DOI: 10.1371/Journal.Pone.0222451  0.303
2019 Diaz-Garcia L, Rodriguez-Bonilla L, Rohde J, Smith T, Zalapa J. Pacbio Sequencing Reveals Identical Organelle Genomes between American Cranberry ( Ait.) and a Wild Relative. Genes. 10. PMID 30974783 DOI: 10.3390/Genes10040291  0.449
2019 Rodríguez-Bonilla L, Bonilla FR, Matusinec D, Wiesman E, Schoville SD, Atucha A, Zalapa J. Exploring the Genetic Diversity of Wild Cranberry Populations in the Upper Midwestern United States Crop Science. 59: 2413-2428. DOI: 10.2135/Cropsci2019.06.0367  0.337
2019 Bolivar-Medina JL, Zalapa JE, Atucha A, Patterson SE. Relationship between alternate bearing and apical bud development in cranberry (Vaccinium macrocarpon) Botany. 97: 101-111. DOI: 10.1139/Cjb-2018-0058  0.374
2019 Fugate KK, Campbell LG, Covarrubias-Pazaran G, Rodriguez-Bonilla L, Zalapa J. Genetic differentiation and diversity of sugarbeet germplasm resistant to the sugarbeet root maggot Plant Genetic Resources: Characterization and Utilization. 17: 514-521. DOI: 10.1017/S1479262119000388  0.329
2019 Guzman A, Gaines-Day H, Lois A, Steffan S, Brunet J, Zalapa J, Guédot C. Surrounding landscape and spatial arrangement of honey bee hives affect pollen foraging and yield in cranberry Agriculture, Ecosystems & Environment. 286: 106624. DOI: 10.1016/J.Agee.2019.106624  0.332
2019 Pfeiffer V, Silbernagel J, Guédot C, Zalapa J. Woodland and floral richness boost bumble bee density in cranberry resource pulse landscapes Landscape Ecology. 34: 979-996. DOI: 10.1007/S10980-019-00810-1  0.304
2019 Rodriguez-Bonilla L, Rohde J, Matusinec D, Zalapa J. Cross-transferability analysis of SSR markers developed from the American Cranberry (Vaccinium macrocarpon Ait.) to other Vaccinium species of agricultural importance Genetic Resources and Crop Evolution. 66: 1713-1725. DOI: 10.1007/S10722-019-00826-1  0.418
2019 Vorsa N, Zalapa J. Domestication, Genetics, and Genomics of the American Cranberry Plant Breeding Reviews. 279-315. DOI: 10.1002/9781119616801.Ch8  0.379
2018 Covarrubias-Pazaran G, Schlautman B, Diaz-Garcia L, Grygleski E, Polashock J, Johnson-Cicalese J, Vorsa N, Iorizzo M, Zalapa J. Multivariate GBLUP Improves Accuracy of Genomic Selection for Yield and Fruit Weight in Biparental Populations of Ait. Frontiers in Plant Science. 9: 1310. PMID 30258453 DOI: 10.3389/Fpls.2018.01310  0.456
2018 Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman B, Grygleski E, Zalapa J. Image-based phenotyping for identification of QTL determining fruit shape and size in American cranberry ( L.). Peerj. 6: e5461. PMID 30128209 DOI: 10.7717/Peerj.5461  0.388
2018 Diaz-Garcia L, Schlautman B, Covarrubias-Pazaran G, Maule A, Johnson-Cicalese J, Grygleski E, Vorsa N, Zalapa J. Massive phenotyping of multiple cranberry populations reveals novel QTLs for fruit anthocyanin content and other important chemical traits. Molecular Genetics and Genomics : Mgg. 293: 1379-1392. PMID 29967963 DOI: 10.1007/S00438-018-1464-Z  0.429
2018 Gallardo RK, Klingthong P, Zhang Q, Polashock J, Atucha A, Zalapa J, Rodriguez-Saona C, Vorsa N, Iorizzo M. Breeding Trait Priorities of the Cranberry Industry in the United States and Canada Hortscience. 53: 1467-1474. DOI: 10.21273/Hortsci13219-18  0.435
2018 Schlautman B, Covarrubias-Pazaran G, Rodriguez-Bonilla L, Hummer K, Bassil N, Smith T, Zalapa J. Genetic diversity and cultivar variants in the NCGR cranberry (Vaccinium macrocarpon Aiton) collection Journal of Genetics. 97: 1339-1351. DOI: 10.1007/S12041-018-1036-3  0.476
2017 Schlautman B, Covarrubias-Pazaran G, Diaz-Garcia L, Iorizzo M, Polashock J, Grygleski E, Vorsa N, Zalapa J. Construction of a High-Density American Cranberry ( Ait.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage Mapping. G3 (Bethesda, Md.). 7: 1177-1189. PMID 28250016 DOI: 10.1534/G3.116.037556  0.523
2017 Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman B, Zalapa J. SOFIA: An R Package for Enhancing Genetic Visualization With Circos Journal of Heredity. 108: 443-448. DOI: 10.1093/Jhered/Esx023  0.303
2017 Schlautman B, Bolivar-Medina J, Hodapp S, Zalapa J. Cranberry SSR multiplexing panels for DNA horticultural fingerprinting and genetic studies Scientia Horticulturae. 219: 280-286. DOI: 10.1016/J.Scienta.2017.03.005  0.467
2017 Schlautman B, Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman N, Vorsa N, Polashock J, Ogden EL, Brown A, Lin Y, Bassil N, Buck EJ, Wiedow C, McCallum S, Graham J, Iorizzo M, ... ... Zalapa J, et al. Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes Molecular Breeding. 38. DOI: 10.1007/S11032-017-0765-Y  0.523
2017 Daverdin G, Johnson-Cicalese J, Zalapa J, Vorsa N, Polashock J. Identification and mapping of fruit rot resistance QTL in American cranberry using GBS Molecular Breeding. 37: 38. DOI: 10.1007/S11032-017-0639-3  0.498
2017 Hirsch H, Brunet J, Zalapa JE, von Wehrden H, Hartmann M, Kleindienst C, Schlautman B, Kosman E, Wesche K, Renison D, Hensen I. Intra- and interspecific hybridization in invasive Siberian elm Biological Invasions. 19: 1889-1904. DOI: 10.1007/S10530-017-1404-6  0.415
2016 Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman B, Zalapa J. GiNA, an Efficient and High-Throughput Software for Horticultural Phenotyping. Plos One. 11: e0160439. PMID 27529547 DOI: 10.1371/Journal.Pone.0160439  0.376
2016 Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Deutsch J, Salazar W, Hernandez-Ochoa M, Grygleski E, Steffan S, Iorizzo M, Polashock J, Vorsa N, Zalapa J. Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping. Bmc Genomics. 17: 451. PMID 27295982 DOI: 10.1186/S12864-016-2802-3  0.491
2016 Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragman: an R package for fragment analysis. Bmc Genetics. 17: 62. PMID 27098093 DOI: 10.1186/S12863-016-0365-6  0.473
2016 Schlautman B, Covarrubias-Pazaran G, Fajardo D, Steffan S, Zalapa J. Discriminating power of microsatellites in cranberry organelles for taxonomic studies in Vaccinium and Ericaceae Genetic Resources and Crop Evolution. 64: 451-466. DOI: 10.1007/S10722-016-0371-6  0.393
2016 Brunet J, Zalapa J, Guries R. Conservation of genetic diversity in slippery elm (Ulmus rubra) in Wisconsin despite the devastating impact of Dutch elm disease Conservation Genetics. 17: 1001-1010. DOI: 10.1007/S10592-016-0838-1  0.393
2015 Patterson SE, Bolivar-Medina JL, Falbel TG, Hedtcke JL, Nevarez-McBride D, Maule AF, Zalapa JE. Are We on the Right Track: Can Our Understanding of Abscission in Model Systems Promote or Derail Making Improvements in Less Studied Crops? Frontiers in Plant Science. 6: 1268. PMID 26858730 DOI: 10.3389/Fpls.2015.01268  0.362
2015 Ecker G, Zalapa J, Auer C. Switchgrass (Panicum virgatum L.) Genotypes Differ between Coastal Sites and Inland Road Corridors in the Northeastern US. Plos One. 10: e0130414. PMID 26125564 DOI: 10.1371/Journal.Pone.0130414  0.459
2015 Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 20: 2001-13. PMID 25633331 DOI: 10.3390/Molecules20022001  0.497
2015 Smith TW, Walinga C, Wang S, Kron P, Suda J, Zalapa J. Evaluating the relationship between diploid and tetraploid Vaccinium oxycoccos (Ericaceae) in eastern Canada Botany. 93: 623-636. DOI: 10.1139/Cjb-2014-0223  0.434
2015 DeVetter L, Colquhoun J, Zalapa J, Harbut R. Yield estimation in commercial cranberry systems using physiological, environmental, and genetic variables Scientia Horticulturae. 190: 83-93. DOI: 10.1016/J.Scienta.2015.04.016  0.396
2015 Steffan SA, Chikaraishi Y, Horton DR, Miliczky E, Zalapa JE, Jones VP, Ohkouchi N. Beneficial or not? Decoding carnivore roles in plant protection Biological Control. 91: 34-41. DOI: 10.1016/J.Biocontrol.2015.07.002  0.33
2015 Schlautman B, Covarrubias-Pazaran G, Diaz-Garcia LA, Johnson-Cicalese J, Iorrizo M, Rodriguez-Bonilla L, Bougie T, Bougie T, Wiesman E, Steffan S, Polashock J, Vorsa N, Zalapa J. Development of a high-density cranberry SSR linkage map for comparative genetic analysis and trait detection Molecular Breeding. 35. DOI: 10.1007/S11032-015-0367-5  0.563
2014 Polashock J, Zelzion E, Fajardo D, Zalapa J, Georgi L, Bhattacharya D, Vorsa N. The American cranberry: first insights into the whole genome of a species adapted to bog habitat. Bmc Plant Biology. 14: 165. PMID 24927653 DOI: 10.1186/1471-2229-14-165  0.35
2014 Schlautman B, Pfeiffer V, Zalapa J, Brunet J. The Use of Sequence-Based SSR Mining for the Development of a Vast Collection of Microsatellites in Aquilegia formosa American Journal of Plant Sciences. 5: 2402-2412. DOI: 10.4236/Ajps.2014.515253  0.431
2014 Fugate KK, Fajardo D, Schlautman B, Ferrareze JP, Bolton MD, Campbell LG, Wiesman E, Zalapa J. Generation and characterization of a sugarbeet transcriptome and transcript-based SSR markers Plant Genome. 7. DOI: 10.3835/Plantgenome2013.11.0038  0.473
2014 Zalapa J, Bougie T, Bougie T, Schlautman B, Wiesman E, Guzman A, Fajardo D, Steffan S, Smith T. Clonal diversity and genetic differentiation revealed by SSR markers in wildVaccinium macrocarponandVaccinium oxycoccos Annals of Applied Biology. 166: 196-207. DOI: 10.1111/Aab.12173  0.431
2013 Fajardo D, Schlautman B, Steffan S, Polashock J, Vorsa N, Zalapa J. The American cranberry mitochondrial genome reveals the presence of selenocysteine (tRNA-Sec and SECIS) insertion machinery in land plants. Gene. 536: 336-43. PMID 24342657 DOI: 10.1016/J.Gene.2013.11.104  0.31
2013 Fajardo D, Senalik D, Ames M, Zhu H, Steffan SA, Harbut R, Polashock J, Vorsa N, Gillespie E, Kron K, Zalapa JE. Complete plastid genome sequence of Vaccinium macrocarpon: Structure, gene content, and rearrangements revealed by next generation sequencing Tree Genetics and Genomes. 9: 489-498. DOI: 10.1007/S11295-012-0573-9  0.349
2013 Fajardo D, Morales J, Zhu H, Steffan S, Harbut R, Bassil N, Hummer K, Polashock J, Vorsa N, Zalapa J. Discrimination of American Cranberry Cultivars and Assessment of Clonal Heterogeneity Using Microsatellite Markers Plant Molecular Biology Reporter. 31: 264-271. DOI: 10.1007/S11105-012-0497-4  0.499
2013 Brunet J, Zalapa JE, Pecori F, Santini A. Hybridization and introgression between the exotic Siberian elm, Ulmus pumila, and the native Field elm, U. minor, in Italy Biological Invasions. 15: 2717-2730. DOI: 10.1007/S10530-013-0486-Z  0.375
2012 Zalapa JE, Cuevas H, Zhu H, Steffan S, Senalik D, Zeldin E, McCown B, Harbut R, Simon P. Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences. American Journal of Botany. 99: 193-208. PMID 22186186 DOI: 10.3732/Ajb.1100394  0.7
2012 Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 124: 87-96. PMID 21904845 DOI: 10.1007/S00122-011-1689-2  0.47
2011 Li D, Cuevas HE, Yang L, Li Y, Garcia-Mas J, Zalapa J, Staub JE, Luan F, Reddy U, He X, Gong Z, Weng Y. Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping. Bmc Genomics. 12: 396. PMID 21816110 DOI: 10.1186/1471-2164-12-396  0.735
2011 Diaz A, Fergany M, Formisano G, Ziarsolo P, Blanca J, Fei Z, Staub JE, Zalapa JE, Cuevas HE, Dace G, Oliver M, Boissot N, Dogimont C, Pitrat M, Hofstede R, et al. A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.). Bmc Plant Biology. 11: 111. PMID 21797998 DOI: 10.1186/1471-2229-11-111  0.757
2011 Zhang Y, Zalapa JE, Jakubowski AR, Price DL, Acharya A, Wei Y, Brummer EC, Kaeppler SM, Casler MD. Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences. Genetica. 139: 933-48. PMID 21786028 DOI: 10.1007/S10709-011-9597-6  0.359
2011 Zalapa JE, Price DL, Kaeppler SM, Tobias CM, Okada M, Casler MD. Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 122: 805-17. PMID 21104398 DOI: 10.1007/S00122-010-1488-1  0.513
2011 Zhang Y, Zalapa J, Jakubowski AR, Price DL, Acharya A, Wei Y, Charles Brummer E, Kaeppler SM, Casler MD. Natural hybrids and gene flow between upland and lowland switchgrass Crop Science. 51: 2626-2641. DOI: 10.2135/Cropsci2011.02.0104  0.439
2011 Staub JE, McCreight JD, Zalapa JE. USDA 846-1 Fractal Melon and Derived Recombinant Inbred Lines Hortscience. 46: 1423-1425. DOI: 10.21273/Hortsci.46.10.1423  0.599
2010 Zalapa JE, Brunet J, Guries RP. The extent of hybridization and its impact on the genetic diversity and population structure of an invasive tree, Ulmus pumila (Ulmaceae). Evolutionary Applications. 3: 157-68. PMID 25567916 DOI: 10.1111/J.1752-4571.2009.00106.X  0.419
2009 Zalapa JE, Brunet J, Guries RP. Patterns of hybridization and introgression between invasive Ulmus pumila (Ulmaceae) and native U. rubra. American Journal of Botany. 96: 1116-28. PMID 21628262 DOI: 10.3732/Ajb.0800334  0.363
2009 Cuevas HE, Staub JE, Simon PW, Zalapa JE. A consensus linkage map identifies genomic regions controlling fruit maturity and beta-carotene-associated flesh color in melon (Cucumis melo L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 119: 741-56. PMID 19551368 DOI: 10.1007/S00122-009-1085-3  0.758
2008 Zalapa JE, Brunet J, Guries RP. Isolation and characterization of microsatellite markers for red elm (Ulmus rubra Muhl.) and cross-species amplification with Siberian elm (Ulmus pumila L.). Molecular Ecology Resources. 8: 109-12. PMID 21585729 DOI: 10.1111/J.1471-8286.2007.01805.X  0.385
2008 Cuevas HE, Staub JE, Simon PW, Zalapa JE, McCreight JD. Mapping of genetic loci that regulate quantity of beta-carotene in fruit of US Western Shipping melon (Cucumis melo L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 117: 1345-59. PMID 18773190 DOI: 10.1007/S00122-008-0868-2  0.752
2008 Zalapa JE, Brunet J, Guries RP. Genetic diversity and relationships among Dutch elm disease tolerant Ulmus pumila L. accessions from China. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 51: 492-500. PMID 18545273 DOI: 10.1139/G08-034  0.354
2008 Paris MK, Zalapa JE, McCreight JD, Staub JE. Genetic dissection of fruit quality components in melon (Cucumis melo L.) using a RIL population derived from exotic x elite US Western Shipping germplasm Molecular Breeding. 22: 405-419. DOI: 10.1007/S11032-008-9185-3  0.691
2008 Zalapa JE, Staub JE, McCreight JD. Variance component analysis of plant architectural traits and fruit yield in melon Euphytica. 162: 129-143. DOI: 10.1007/S10681-007-9622-0  0.641
2007 Zalapa JE, Staub JE, McCreight JD, Chung SM, Cuevas H. Detection of QTL for yield-related traits using recombinant inbred lines derived from exotic and elite US Western Shipping melon germplasm. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 1185-201. PMID 17294163 DOI: 10.1007/S00122-007-0510-8  0.757
2006 Zalapa JE, Staub JE, McCreight JD. Generation means analysis of plant architectural traits and fruit yield in melon Plant Breeding. 125: 482-487. DOI: 10.1111/J.1439-0523.2006.01273.X  0.625
2005 Staub JE, Zalapa J. THE INCORPORATION OF THE FRACTAL GROWTH HABIT INTO WESTERN SHIPPING MELON Hortscience. 40: 889f-890. DOI: 10.21273/Hortsci.40.3.889F  0.645
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