Year |
Citation |
Score |
2021 |
Yamamoto Y, Gustafson EA, Foulk MS, Smith HS, Gerbi SA. Anatomy and evolution of a DNA replication origin. Chromosoma. PMID 34254172 DOI: 10.1007/s00412-021-00756-x |
0.332 |
|
2018 |
Yamamoto Y, Gerbi SA. Making ends meet: targeted integration of DNA fragments by genome editing. Chromosoma. PMID 30003320 DOI: 10.1007/S00412-018-0677-6 |
0.402 |
|
2018 |
Gerbi SA. Bundling up DNA. Elife. 7. PMID 29771237 DOI: 10.7554/Elife.37234 |
0.388 |
|
2017 |
Gerbi SA. Treasure Your Exceptions: An Interview with 2017 George Beadle Award Recipient Susan A. Gerbi. Genetics. 207: 1215-1217. PMID 29203696 DOI: 10.1534/Genetics.117.300398 |
0.397 |
|
2015 |
Doris SM, Smith DR, Beamesderfer JN, Raphael BJ, Nathanson JA, Gerbi SA. Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics. Rna (New York, N.Y.). 21: 1719-30. PMID 26283689 DOI: 10.1261/Rna.051144.115 |
0.651 |
|
2015 |
Gerbi SA. Beginning at the end: DNA replication within the telomere. The Journal of Cell Biology. 210: 177-9. PMID 26195663 DOI: 10.1083/Jcb.201506078 |
0.382 |
|
2015 |
Yamamoto Y, Bliss J, Gerbi SA. Whole Organism Genome Editing: Targeted Large DNA Insertion via ObLiGaRe Nonhomologous End-Joining in Vivo Capture. G3 (Bethesda, Md.). 5: 1843-7. PMID 26139843 DOI: 10.1534/G3.115.019901 |
0.355 |
|
2015 |
Urban JM, Foulk MS, Casella C, Gerbi SA. The hunt for origins of DNA replication in multicellular eukaryotes. F1000prime Reports. 7: 30. PMID 25926981 DOI: 10.12703/P7-30 |
0.423 |
|
2015 |
Foulk MS, Urban JM, Casella C, Gerbi SA. Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins. Genome Research. 25: 725-35. PMID 25695952 DOI: 10.1101/Gr.183848.114 |
0.426 |
|
2013 |
Liew GM, Foulk MS, Gerbi SA. The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 345-60. PMID 23737076 DOI: 10.1007/S10577-013-9360-1 |
0.399 |
|
2013 |
Foulk MS, Waggener JM, Johnson JM, Yamamoto Y, Liew GM, Urnov FD, Young Y, Lee G, Smith HS, Gerbi SA. Isolation and characterization of the ecdysone receptor and its heterodimeric partner ultraspiracle through development in Sciara coprophila. Chromosoma. 122: 103-19. PMID 23321980 DOI: 10.1007/S00412-012-0395-4 |
0.397 |
|
2006 |
Foulk MS, Liang C, Wu N, Blitzblau HG, Smith H, Alam D, Batra M, Gerbi SA. Ecdysone induces transcription and amplification in Sciara coprophila DNA puff II/9A. Developmental Biology. 299: 151-63. PMID 16938289 DOI: 10.1016/J.Ydbio.2006.07.018 |
0.402 |
|
2005 |
Borovjagin AV, Gerbi SA. An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA. Nucleic Acids Research. 33: 4995-5005. PMID 16147982 DOI: 10.1093/Nar/Gki815 |
0.402 |
|
2005 |
Gerbi SA. Mapping origins of DNA replication in eukaryotes. Methods in Molecular Biology (Clifton, N.J.). 296: 167-80. PMID 15576931 DOI: 10.1385/1-59259-857-9:167 |
0.371 |
|
2004 |
Borovjagin AV, Gerbi SA. Xenopus U3 snoRNA docks on pre-rRNA through a novel base-pairing interaction. Rna (New York, N.Y.). 10: 942-53. PMID 15146078 DOI: 10.1261/Rna.5256704 |
0.385 |
|
2003 |
Gerbi SA, Borovjagin AV, Odreman FE, Lange TS. U4 snRNA nucleolar localization requires the NHPX/15.5-kD protein binding site but not Sm protein or U6 snRNA association. The Journal of Cell Biology. 162: 821-32. PMID 12939253 DOI: 10.1083/Jcb.200301071 |
0.372 |
|
2003 |
Gerbi SA, Borovjagin AV, Lange TS. The nucleolus: a site of ribonucleoprotein maturation. Current Opinion in Cell Biology. 15: 318-25. PMID 12787774 DOI: 10.1016/S0955-0674(03)00049-8 |
0.372 |
|
2002 |
Gerbi SA, Strezoska Z, Waggener JM. Initiation of DNA replication in multicellular eukaryotes. Journal of Structural Biology. 140: 17-30. PMID 12490150 DOI: 10.1016/S1047-8477(02)00538-5 |
0.428 |
|
2002 |
Urnov FD, Liang C, Blitzblau HG, Smith HS, Gerbi SA. A DNase I hypersensitive site flanks an origin of DNA replication and amplification in Sciara. Chromosoma. 111: 291-303. PMID 12474058 DOI: 10.1007/S00412-002-0194-4 |
0.452 |
|
2002 |
Lunyak VV, Ezrokhi M, Smith HS, Gerbi SA. Developmental changes in the Sciara II/9A initiation zone for DNA replication. Molecular and Cellular Biology. 22: 8426-37. PMID 12446763 DOI: 10.1128/Mcb.22.24.8426-8437.2002 |
0.43 |
|
2002 |
Gerbi SA, Lange TS. All small nuclear RNAs (snRNAs) of the [U4/U6.U5] Tri-snRNP localize to nucleoli; Identification of the nucleolar localization element of U6 snRNA. Molecular Biology of the Cell. 13: 3123-37. PMID 12221120 DOI: 10.1091/Mbc.01-12-0596 |
0.335 |
|
2002 |
Gerbi SA, Bielinsky AK. DNA replication and chromatin. Current Opinion in Genetics & Development. 12: 243-8. PMID 11893499 DOI: 10.1016/S0959-437X(02)00292-7 |
0.369 |
|
2001 |
Gerbi SA, Borovjagin AV, Ezrokhi M, Lange TS. Ribosome biogenesis: role of small nucleolar RNA in maturation of eukaryotic rRNA. Cold Spring Harbor Symposia On Quantitative Biology. 66: 575-90. PMID 12762059 DOI: 10.1101/Sqb.2001.66.575 |
0.379 |
|
2001 |
Bielinsky AK, Blitzblau H, Beall EL, Ezrokhi M, Smith HS, Botchan MR, Gerbi SA. Origin recognition complex binding to a metazoan replication origin. Current Biology : Cb. 11: 1427-31. PMID 11566101 DOI: 10.1016/S0960-9822(01)00444-4 |
0.417 |
|
2001 |
Mok EH, Smith HS, DiBartolomeis SM, Kerrebrock AW, Rothschild LJ, Lange TS, Gerbi SA. Maintenance of the DNA puff expanded state is independent of active replication and transcription. Chromosoma. 110: 186-96. PMID 11513293 DOI: 10.1007/S004120000119 |
0.404 |
|
2001 |
Borovjagin AV, Gerbi SA. Xenopus U3 snoRNA GAC-Box A' and Box A sequences play distinct functional roles in rRNA processing. Molecular and Cellular Biology. 21: 6210-21. PMID 11509664 DOI: 10.1128/Mcb.21.18.6210-6221.2001 |
0.419 |
|
2000 |
Lange TS, Gerbi SA. Transient nucleolar localization Of U6 small nuclear RNA in Xenopus Laevis oocytes. Molecular Biology of the Cell. 11: 2419-28. PMID 10888678 DOI: 10.1091/Mbc.11.7.2419 |
0.336 |
|
2000 |
Borovjagin AV, Gerbi SA. The spacing between functional Cis-elements of U3 snoRNA is critical for rRNA processing. Journal of Molecular Biology. 300: 57-74. PMID 10864498 DOI: 10.1006/Jmbi.2000.3798 |
0.434 |
|
1999 |
Lange TS, Ezrokhi M, Amaldi F, Gerbi SA. Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA. Molecular Biology of the Cell. 10: 3877-90. PMID 10564278 DOI: 10.1091/Mbc.10.11.3877 |
0.379 |
|
1999 |
Bielinsky AK, Gerbi SA. Chromosomal ARS1 has a single leading strand start site. Molecular Cell. 3: 477-86. PMID 10230400 DOI: 10.1016/S1097-2765(00)80475-X |
0.403 |
|
1999 |
Borovjagin AV, Gerbi SA. U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA processing pathway is taken in Xenopus oocytes. Journal of Molecular Biology. 286: 1347-63. PMID 10064702 DOI: 10.1006/Jmbi.1999.2527 |
0.386 |
|
1998 |
Lange TS, Ezrokhi M, Borovjagin AV, Rivera-León R, North MT, Gerbi SA. Nucleolar localization elements of Xenopus laevis U3 small nucleolar RNA. Molecular Biology of the Cell. 9: 2973-85. PMID 9763456 DOI: 10.1091/Mbc.9.10.2973 |
0.369 |
|
1998 |
Lange TS, Borovjagin AV, Gerbi SA. Nucleolar localization elements in U8 snoRNA differ from sequences required for rRNA processing. Rna (New York, N.Y.). 4: 789-800. PMID 9671052 DOI: 10.1017/S1355838298980438 |
0.407 |
|
1998 |
Lange TS, Borovjagin A, Maxwell ES, Gerbi SA. Conserved boxes C and D are essential nucleolar localization elements of U14 and U8 snoRNAs. The Embo Journal. 17: 3176-87. PMID 9606199 DOI: 10.1093/Emboj/17.11.3176 |
0.33 |
|
1998 |
Bielinsky AK, Gerbi SA. Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science (New York, N.Y.). 279: 95-8. PMID 9417033 DOI: 10.1126/Science.279.5347.95 |
0.408 |
|
1997 |
Gerbi SA, Bielinsky AK. Replication initiation point mapping. Methods (San Diego, Calif.). 13: 271-80. PMID 9441853 DOI: 10.1006/Meth.1997.0526 |
0.433 |
|
1997 |
Rivera-León R, Gerbi SA. Delocalization of some small nucleolar RNPs after actinomycin D treatment to deplete early pre-rRNAs. Chromosoma. 105: 506-14. PMID 9211978 DOI: 10.1007/Bf02510487 |
0.333 |
|
1997 |
Gerbi SA, Borovjagin A. U3 snoRNA may recycle through different compartments of the nucleolus. Chromosoma. 105: 401-6. PMID 9211967 DOI: 10.1007/Bf02510476 |
0.377 |
|
1997 |
Gerbi SA. The nucleolus: Then and now Chromosoma. 105: 385-387. DOI: 10.1007/Bf02510473 |
0.32 |
|
1996 |
Gerbi SA, Urnov FD. 35 Differential DNA Replication in Insects Cold Spring Harbor Monograph Archive. 31: 947-969. DOI: 10.1101/087969459.31.947 |
0.376 |
|
1995 |
Gerbi SA. Small nucleolar RNA. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 845-58. PMID 8722000 DOI: 10.1139/O95-092 |
0.453 |
|
1994 |
Liang C, Gerbi SA. Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method. Molecular and Cellular Biology. 14: 1520-9. PMID 8289825 DOI: 10.1128/Mcb.14.2.1520 |
0.36 |
|
1993 |
Liang C, Spitzer JD, Smith HS, Gerbi SA. Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. Genes & Development. 7: 1072-84. PMID 8504930 DOI: 10.1101/Gad.7.6.1072 |
0.383 |
|
1993 |
Wu N, Liang C, DiBartolomeis SM, Smith HS, Gerbi SA. Developmental progression of DNA puffs in Sciara coprophila: amplification and transcription. Developmental Biology. 160: 73-84. PMID 8224550 DOI: 10.1006/Dbio.1993.1287 |
0.43 |
|
1993 |
Gerbi SA, Liang C, Wu N, DiBartolomeis SM, Bienz-Tadmor B, Smith HS, Urnov FD. DNA amplification in DNA puff II/9A of Sciara coprophila. Cold Spring Harbor Symposia On Quantitative Biology. 58: 487-94. PMID 7956063 DOI: 10.1101/Sqb.1993.058.01.055 |
0.356 |
|
1992 |
Savino R, Hitti Y, Gerbi SA. Genes for Xenopus laevis U3 small nuclear RNA. Nucleic Acids Research. 20: 5435-42. PMID 1437561 DOI: 10.1093/Nar/20.20.5435 |
0.409 |
|
1992 |
Bienz-Tadmor B, Tolias P, Stebbins-Boaz B, Mariani BD, Gerbi SA, Kafatos FC. Chorion gene cis-regulatory DNA restricts tissue specificity of reporter gene expression in transformed Drosophila. Chromosoma. 101: 538-48. PMID 1325896 DOI: 10.1007/Bf00660313 |
0.323 |
|
1991 |
Stebbins-Boaz B, Gerbi SA. Structural analysis of the peptidyl transferase region in ribosomal RNA of the eukaryote Xenopus laevis. Journal of Molecular Biology. 217: 93-112. PMID 1988683 DOI: 10.1016/0022-2836(91)90614-C |
0.403 |
|
1991 |
Bienz-Tadmor B, Smith HS, Gerbi SA. The promoter of DNA puff gene II/9-1 of Sciara coprophila is inducible by ecdysone in late prepupal salivary glands of Drosophila melanogaster. Cell Regulation. 2: 875-88. PMID 1809395 DOI: 10.1091/Mbc.2.11.875 |
0.374 |
|
1991 |
Andreazzoli M, Gerbi SA. Changes in 7SL RNA conformation during the signal recognition particle cycle. The Embo Journal. 10: 767-77. PMID 1706993 DOI: 10.1002/J.1460-2075.1991.Tb08008.X |
0.352 |
|
1990 |
Savino R, Gerbi SA. In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing. The Embo Journal. 9: 2299-308. PMID 2357971 DOI: 10.1002/J.1460-2075.1990.Tb07401.X |
0.375 |
|
1990 |
SAVINO R, GERBI S. disruption of U3 snRNA affects ribosomal RNA processing Cell Biology International Reports. 14: 128. DOI: 10.1016/0309-1651(90)90611-2 |
0.366 |
|
1990 |
ANDREAZZOLI M, GERBI S. Higher order structure and conformational changes of 7SL-RNA Cell Biology International Reports. 14: 112. DOI: 10.1016/0309-1651(90)90548-D |
0.329 |
|
1989 |
DiBartolomeis SM, Gerbi SA. Molecular characterization of DNA puff II/9A genes in Sciara coprophila. Journal of Molecular Biology. 210: 531-40. PMID 2614832 DOI: 10.1016/0022-2836(89)90129-0 |
0.411 |
|
1989 |
Kerrebrock AW, Srivastava R, Gerbi SA. Isolation and characterization of ribosomal DNA variants from Sciara coprophila. Journal of Molecular Biology. 210: 1-13. PMID 2555520 DOI: 10.1016/0022-2836(89)90286-6 |
0.432 |
|
1988 |
Jeppesen C, Stebbins-Boaz B, Gerbi SA. Nucleotide sequence determination and secondary structure of Xenopus U3 snRNA. Nucleic Acids Research. 16: 2127-48. PMID 3357768 DOI: 10.1093/Nar/16.5.2127 |
0.49 |
|
1987 |
Gerbi SA, Jeppesen C, Stebbins-Boaz B, Ares M. Evolution of eukaryotic rRNA: constraints imposed by RNA interactions. Cold Spring Harbor Symposia On Quantitative Biology. 52: 709-19. PMID 3454284 DOI: 10.1101/Sqb.1987.052.01.080 |
0.364 |
|
1986 |
Rothschild LJ, Ragan MA, Coleman AW, Heywood P, Gerbi SA. Are rRNA sequence comparisons the Rosetta stone of phylogenetics? Cell. 47: 640. PMID 3779840 DOI: 10.1016/0092-8674(86)90505-2 |
0.394 |
|
1986 |
Gerbi SA. The evolution of eukaryotic ribosomal DNA. Bio Systems. 19: 247-58. PMID 3026507 DOI: 10.1016/0303-2647(86)90001-8 |
0.479 |
|
1985 |
Ware VC, Renkawitz R, Gerbi SA. rRNA processing: removal of only nineteen bases at the gap between 28S alpha and 28S beta rRNAs in Sciara coprophila. Nucleic Acids Research. 13: 3581-97. PMID 2989775 DOI: 10.1093/Nar/13.10.3581 |
0.371 |
|
1984 |
Tague BW, Gerbi SA. Processing of the large rRNA precursor: two proposed categories of RNA-RNA interactions in eukaryotes. Journal of Molecular Evolution. 20: 362-7. PMID 6210374 DOI: 10.1007/Bf02104742 |
0.414 |
|
1984 |
Clark CG, Tague BW, Ware VC, Gerbi SA. Xenopus laevis 28S ribosomal RNA: a secondary structure model and its evolutionary and functional implications. Nucleic Acids Research. 12: 6197-220. PMID 6147812 DOI: 10.1093/Nar/12.15.6197 |
0.393 |
|
1983 |
Ware VC, Tague BW, Clark CG, Gourse RL, Brand RC, Gerbi SA. Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis. Nucleic Acids Research. 11: 7795-817. PMID 6359063 DOI: 10.1093/Nar/11.22.7795 |
0.453 |
|
1982 |
Bäumlein H, Wobus U, Gerbi S, Kafatos FC. Characterization of a 249-bp tandemly repetitive, satellite-like repeat in the translated portion of Balbiani ring c of Chironomus thummi Embo Journal. 1: 641-647. PMID 7188354 DOI: 10.1002/J.1460-2075.1982.Tb01221.X |
0.461 |
|
1982 |
Clark CG, Gerbi SA. Ribosomal RNA evolution by fragmentation of the 23S progenitor: maturation pathway parallels evolutionary emergence. Journal of Molecular Evolution. 18: 329-36. PMID 7120427 DOI: 10.1007/Bf01733899 |
0.444 |
|
1982 |
Bäumlein H, Wobus U, Gerbi SA, Kafatos FC. The basic repeat unit of a Chironomus Balbiani ring gene. Nucleic Acids Research. 10: 3893-904. PMID 7111025 DOI: 10.1093/Nar/10.13.3893 |
0.309 |
|
1982 |
Taparowsky EJ, Gerbi SA. Structure of 1.71 lb gm/cm(3) bovine satellite DNA: evolutionary relationship to satellite I. Nucleic Acids Research. 10: 5503-15. PMID 6292843 DOI: 10.1093/Nar/10.18.5503 |
0.662 |
|
1982 |
Matsumoto LH, Gerbi SA. Early initiation of bovine satellite I DNA replication. Experimental Cell Research. 140: 47-54. PMID 6286333 DOI: 10.1016/0014-4827(82)90154-9 |
0.364 |
|
1982 |
Taparowsky EJ, Gerbi SA. Sequence analysis of bovine satellite I DNA (1.715 gm/cm3). Nucleic Acids Research. 10: 1271-81. PMID 6280137 DOI: 10.1093/Nar/10.4.1271 |
0.687 |
|
1982 |
Taparowsky EJ, Gerbi SA. Structure of 1.711b gm/cm bovine satellite DNA: Evolutionary relationship to satellite i Nucleic Acids Research. 10: 5503-5515. DOI: 10.1093/nar/10.18.5503 |
0.606 |
|
1981 |
Renkawitz-Pohl R, Matsumoto L, Gerbi SA. Two distinct intervening sequences in different ribosomal DNA repeat units of Sciara coprophila. Nucleic Acids Research. 9: 3747-64. PMID 7279671 DOI: 10.1093/Nar/9.15.3747 |
0.482 |
|
1981 |
Abbott AG, Gerbi SA. Spermatogenesis in Sciara coprophila. II. Precocious chromosome orientation in meiosis II. Chromosoma. 83: 19-27. PMID 7196316 DOI: 10.1007/Bf00286013 |
0.313 |
|
1981 |
Gourse RL, Thurlow DL, Gerbi SA, Zimmermann RA. Specific binding of a prokaryotic ribosomal protein to a eukaryotic ribosomal RNA: implications for evolution and autoregulation. Proceedings of the National Academy of Sciences of the United States of America. 78: 2722-6. PMID 6265904 DOI: 10.1073/Pnas.78.5.2722 |
0.371 |
|
1981 |
Gerbi SA. EVOLUTION OF RIBOSOMAL RNA GENES Biochemical Society Transactions. 9: 94P-94P. DOI: 10.1042/Bst009094P |
0.362 |
|
1980 |
Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. IV. Extraordinary evolutionary conservation in sequences that flank introns in rDNA. Nucleic Acids Research. 8: 3623-37. PMID 6253905 DOI: 10.1093/Nar/8.16.3623 |
0.53 |
|
1980 |
Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. III. Location of evolutionarily conserved regions within ribosomal DNA. Journal of Molecular Biology. 140: 321-39. PMID 6253644 DOI: 10.1016/0022-2836(80)90109-6 |
0.542 |
|
1979 |
Brand RC, Gerbi SA. Fine structure of ribosomal RNA. II. Distribution of methylated sequences within Xenopus laevis rRNA. Nucleic Acids Research. 7: 1497-511. PMID 388355 DOI: 10.1093/Nar/7.6.1497 |
0.39 |
|
1979 |
Renkawitz R, Gerbi SA, Glätzer KH. Ribosomal DNA of fly Sciara coprophila has a very small and homogeneous repeat unit. Molecular & General Genetics : Mgg. 173: 1-13. PMID 288964 DOI: 10.1007/Bf00267685 |
0.44 |
|
1977 |
Gerbi SA. Analysis of RNA-DNA competition hybridization using the Scatchard plot. Experimental Cell Research. 106: 454-7. PMID 862671 DOI: 10.1016/0014-4827(77)90202-6 |
0.42 |
|
1977 |
Crouse HV, Gerbi SA, Liang CM, Magnus L, Mercer IM. Localization of ribosomal DNA within the proximal X heterochromatin of Sciara coprophila (Diptera, Sciaridae). Chromosoma. 64: 305-18. PMID 563785 DOI: 10.1007/Bf00294938 |
0.306 |
|
1976 |
Gerbi SA. Fine structure of ribosomal RNA. I. Conservation of homologous regions within ribosomal RNA of eukaryotes. Journal of Molecular Biology. 106: 791-816. PMID 978737 DOI: 10.1016/0022-2836(76)90265-5 |
0.437 |
|
1976 |
Gerbi SA. DNA Elution during Thermal Melting of RNA-DNA Hybrids on Nitrocellulose Filters Journal of Molecular Biology. 106: 811-816. DOI: 10.1016/0022-2836(76)90266-7 |
0.396 |
|
1975 |
Mowbray SL, Gerbi SA, Landy A. Interdigitated repeated sequences in bovine satellite DNA. Nature. 253: 367-70. PMID 1078604 DOI: 10.1038/253367A0 |
0.473 |
|
1971 |
Gerbi SA. Localization and characterization of the ribosomal RNA cistrons in Sciara coprophila. Journal of Molecular Biology. 58: 499-511. PMID 5091980 DOI: 10.1016/0022-2836(71)90367-6 |
0.397 |
|
1970 |
Pardu ML, Gerbi SA, Eckhardt RA, Gall JG. Cytological localization of DNA complementary to ribosomal RNA in polytene chromosomes of Diptera. Chromosoma. 29: 268-90. PMID 4908207 DOI: 10.1007/Bf00325943 |
0.626 |
|
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