Thomas Schmidt - Publications

Affiliations: 
Michigan State University, East Lansing, MI 

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM. Second Correction for Wertz et al., "Genomic and Physiological Characterization of the Verrucomicrobia Isolate Geminisphaera colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes". Applied and Environmental Microbiology. 84. PMID 29915155 DOI: 10.1128/Aem.00952-18  0.36
2017 Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM. Correction for Wertz et al., "Genomic and Physiological Characterization of the Verrucomicrobia Isolate Didymococcus colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes". Applied and Environmental Microbiology. 83. PMID 28625969 DOI: 10.1128/Aem.00987-17  0.36
2015 Beck JM, Schloss PD, Venkataraman A, Twigg H, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, ... ... Schmidt TM, et al. Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. American Journal of Respiratory and Critical Care Medicine. 192: 1335-44. PMID 26247840 DOI: 10.1164/Rccm.201501-0128Oc  1
2014 Lee ZM, Schmidt TM. Bacterial growth efficiency varies in soils under different land management practices Soil Biology and Biochemistry. 69: 282-290. DOI: 10.1016/J.Soilbio.2013.11.012  1
2013 Isanapong J, Sealy Hambright W, Willis AG, Boonmee A, Callister SJ, Burnum KE, PaÅ¡a-Tolić L, Nicora CD, Wertz JT, Schmidt TM, Rodrigues JL. Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. The Isme Journal. 7: 1803-13. PMID 23657364 DOI: 10.1038/Ismej.2013.74  1
2013 Morris RL, Schmidt TM. Shallow breathing: bacterial life at low O(2). Nature Reviews. Microbiology. 11: 205-12. PMID 23411864 DOI: 10.1038/nrmicro2970  1
2013 Xue K, Wu L, Deng Y, He Z, Van Nostrand J, Robertson PG, Schmidt TM, Zhou J. Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands. Applied and Environmental Microbiology. 79: 1284-92. PMID 23241975 DOI: 10.1128/Aem.03393-12  1
2011 Levine UY, Teal TK, Robertson GP, Schmidt TM. Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane. The Isme Journal. 5: 1683-91. PMID 21490688 DOI: 10.1038/Ismej.2011.40  1
2011 Eichorst SA, Kuske CR, Schmidt TM. Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Applied and Environmental Microbiology. 77: 586-96. PMID 21097594 DOI: 10.1128/Aem.01080-10  1
2009 Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infection and Immunity. 77: 2367-75. PMID 19307217 DOI: 10.1128/Iai.01520-08  1
2009 Lee ZM, Bussema C, Schmidt TM. rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Research. 37: D489-93. PMID 18948294 DOI: 10.1093/nar/gkn689  1
2008 Young VB, Schmidt TM. Overview of the gastrointestinal microbiota. Advances in Experimental Medicine and Biology. 635: 29-40. PMID 18841701 DOI: 10.1007/978-0-387-09550-9_3  1
2008 Gil IS, Sheldon W, Schmidt T, Servilla M, Aguilar R, Gries C, Gray T, Field D, Cole J, Pan JY, Palanisamy G, Henshaw D, O'Brien M, Kinkel L, McMahon K, et al. Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes. Omics : a Journal of Integrative Biology. 12: 151-6. PMID 18407745 DOI: 10.1089/Omi.2008.0015  1
2008 Chang JY, Antonopoulos DA, Kalra A, Tonelli A, Khalife WT, Schmidt TM, Young VB. Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. The Journal of Infectious Diseases. 197: 435-8. PMID 18199029 DOI: 10.1086/525047  1
2008 Rodrigues JL, Duffy MA, Tessier AJ, Ebert D, Mouton L, Schmidt TM. Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species. Applied and Environmental Microbiology. 74: 1575-82. PMID 18192404 DOI: 10.1128/Aem.02438-07  1
2007 Eichorst SA, Breznak JA, Schmidt TM. Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Applied and Environmental Microbiology. 73: 2708-17. PMID 17293520 DOI: 10.1128/Aem.02140-06  1
2007 Dethlefsen L, Schmidt TM. Performance of the translational apparatus varies with the ecological strategies of bacteria. Journal of Bacteriology. 189: 3237-45. PMID 17277058 DOI: 10.1128/Jb.01686-06  1
2005 Kuehl CJ, Wood HD, Marsh TL, Schmidt TM, Young VB. Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota. Infection and Immunity. 73: 6952-61. PMID 16177375 DOI: 10.1128/IAI.73.10.6852-6961.2005  1
2005 Dethlefsen L, Schmidt TM. Differences in codon bias cannot explain differences in translational power among microbes. Bmc Bioinformatics. 6: 3. PMID 15636642 DOI: 10.1186/1471-2105-6-3  1
2004 Stevenson BS, Schmidt TM. Life history implications of rRNA gene copy number in Escherichia coli. Applied and Environmental Microbiology. 70: 6670-7. PMID 15528533 DOI: 10.1128/Aem.70.11.6670-6677.2004  1
2004 Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM, Breznak JA. New strategies for cultivation and detection of previously uncultured microbes. Applied and Environmental Microbiology. 70: 4748-55. PMID 15294811 DOI: 10.1128/Aem.70.8.4748-4755.2004  1
2004 Lepp PW, Schmidt TM. Changes in Synechococcus population size and cellular ribosomal RNA content in response to predation and nutrient limitation. Microbial Ecology. 48: 1-9. PMID 15164238 DOI: 10.1007/s00248-003-1041-8  1
2004 Young VB, Schmidt TM. Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. Journal of Clinical Microbiology. 42: 1203-6. PMID 15004076 DOI: 10.1128/JCM.42.3.1203-1206.2004  1
2003 Keough BP, Schmidt TM, Hicks RE. Archaeal nucleic acids in picoplankton from great lakes on three continents. Microbial Ecology. 46: 238-48. PMID 14708748 DOI: 10.1007/s00248-003-1003-1  1
2003 Buckley DH, Schmidt TM. Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environmental Microbiology. 5: 441-52. PMID 12755711 DOI: 10.1046/J.1462-2920.2003.00404.X  1
2003 Do YS, Schmidt TM, Zahn JA, Boyd ES, de la Mora A, DiSpirito AA. Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation. Applied and Environmental Microbiology. 69: 1710-20. PMID 12620863 DOI: 10.1128/Aem.69.3.1710-1720.2003  1
2003 Hashimoto JG, Stevenson BS, Schmidt TM. Rates and consequences of recombination between rRNA operons. Journal of Bacteriology. 185: 966-72. PMID 12533472 DOI: 10.1128/Jb.185.3.966-972.2003  1
2001 Urbance JW, Bratina BJ, Stoddard SF, Schmidt TM. Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L-sorbose to 2-keto-L-gulonic acid. International Journal of Systematic and Evolutionary Microbiology. 51: 1059-70. PMID 11411674  1
2000 Klappenbach JA, Dunbar JM, Schmidt TM. rRNA operon copy number reflects ecological strategies of bacteria. Applied and Environmental Microbiology. 66: 1328-33. PMID 10742207 DOI: 10.1128/Aem.66.4.1328-1333.2000  1
1999 Lilburn TG, Schmidt TM, Breznak JA. Phylogenetic diversity of termite gut spirochaetes. Environmental Microbiology. 1: 331-45. PMID 11207751  1
1999 Velicer GJ, Schmidt TM, Lenski RE. Application of Traditional and Phylogenetically Based Comparative Methods to Test for a Trade-off in Bacterial Growth Rate at Low versus High Substrate Concentration. Microbial Ecology. 38: 191-200. PMID 10541781 DOI: 10.1007/S002489900169  1
1999 Lopez FA, Manglicmot J, Schmidt TM, Yeh C, Smith HV, Relman DA. Molecular characterization of Cyclospora-like organisms from baboons. The Journal of Infectious Diseases. 179: 670-6. PMID 9952374 DOI: 10.1086/314645  1
1999 Leadbetter JR, Schmidt TM, Graber JR, Breznak JA. Acetogenesis from H2 plus CO2 by spirochetes from termite guts. Science (New York, N.Y.). 283: 686-9. PMID 9924028 DOI: 10.1126/Science.283.5402.686  1
1998 Button DK, Robertson BR, Lepp PW, Schmidt TM. A small, dilute-cytoplasm, high-affinity, novel bacterium isolated by extinction culture and having kinetic constants compatible with growth at ambient concentrations of dissolved nutrients in seawater. Applied and Environmental Microbiology. 64: 4467-76. PMID 9797308 DOI: 10.1128/Aem.64.11.4467-4476.1998  1
1998 Lenski RE, Mongold JA, Sniegowski PD, Travisano M, Vasi F, Gerrish PJ, Schmidt TM. Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another? Antonie Van Leeuwenhoek. 73: 35-47. PMID 9602277 DOI: 10.1023/A:1000675521611  1
1998 Stevenson BS, Schmidt TM. Growth rate-dependent accumulation of RNA from plasmid-borne rRNA operons in Escherichia coli. Journal of Bacteriology. 180: 1970-2. PMID 9537403 DOI: 10.1128/Jb.180.7.1970-1972.1998  1
1998 Lepp PW, Schmidt TM. Nucleic acid content of Synechococcus spp. during growth in continuous light and light/dark cycles Archives of Microbiology. 170: 201-207. DOI: 10.1007/s002030050634  1
1997 Hogan DA, Buckley DH, Nakatsu CH, Schmidt TM, Hausinger RP. Distribution of the tfda gene in soil bacteria that do not degrade 2,4-dichlorophenoxyacetic acid (2,4-D) Microbial Ecology. 34: 90-96. DOI: 10.1007/s002489900038  1
1997 Yanni YG, Rizk RY, Corich V, Squartini A, Ninke K, Philip-Hollingsworth S, Orgambide G, De Bruijn F, Stoltzfus J, Buckley D, Schmidt TM, Mateos PF, Ladha JK, Dazzo FB. Natural endophytic association between Rhizobium leguminosarum bv. trifolii and rice roots and assessment of its potential to promote rice growth Plant and Soil. 194: 99-114.  1
1996 Lonergan DJ, Jenter HL, Coates JD, Phillips EJ, Schmidt TM, Lovley DR. Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. Journal of Bacteriology. 178: 2402-8. PMID 8636045  1
1996 Relman DA, Schmidt TM, Gajadhar A, Sogin M, Cross J, Yoder K, Sethabutr O, Echeverria P. Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species. The Journal of Infectious Diseases. 173: 440-5. PMID 8568307 DOI: 10.1093/Infdis/173.2.440  1
1994 Garrad R, Schmidt TM, Bhattacharjee JK. Molecular and functional analysis of the LYS1 gene of Candida albicans. Infection and Immunity. 62: 5027-31. PMID 7927784  1
1992 Relman DA, Lepp PW, Sadler KN, Schmidt TM. Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria. Molecular Microbiology. 6: 1801-7. PMID 1378524 DOI: 10.1111/J.1365-2958.1992.Tb01352.X  1
1992 Relman DA, Schmidt TM, MacDermott RP, Falkow S. Identification of the uncultured bacillus of Whipple's disease. The New England Journal of Medicine. 327: 293-301. PMID 1377787 DOI: 10.1056/Nejm199207303270501  1
1991 Schmidt TM, DeLong EF, Pace NR. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. Journal of Bacteriology. 173: 4371-8. PMID 2066334 DOI: 10.1128/Jb.173.14.4371-4378.1991  1
1991 Eden PA, Schmidt TM, Blakemore RP, Pace NR. Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. International Journal of Systematic Bacteriology. 41: 324-5. PMID 1854644 DOI: 10.1099/00207713-41-2-324  1
1991 Koch AL, Schmidt TM. The first cellular bioenergetic process: primitive generation of a proton-motive force. Journal of Molecular Evolution. 33: 297-304. PMID 1663558 DOI: 10.1007/BF02102860  1
1990 Giovannoni SJ, DeLong EF, Schmidt TM, Pace NR. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Applied and Environmental Microbiology. 56: 2572-5. PMID 2403262 DOI: 10.1128/Aem.56.8.2572-2575.1990  1
1990 Relman DA, Loutit JS, Schmidt TM, Falkow S, Tompkins LS. The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens. The New England Journal of Medicine. 323: 1573-80. PMID 2233945 DOI: 10.1056/Nejm199012063232301  1
1990 Schmidt TM, DiSpirito AA. Spectral characterization of c-type cytochromes purified from Beggiatoa alba Archives of Microbiology. 154: 453-458. DOI: 10.1007/BF00245227  1
1989 Schmidt TM, Kopecky K, Nealson KH. Bioluminescence of the insect pathogen Xenorhabdus luminescens. Applied and Environmental Microbiology. 55: 2607-12. PMID 2604399  1
1988 Richardson WH, Schmidt TM, Nealson KH. Identification of an anthraquinone pigment and a hydroxystilbene antibiotic from Xenorhabdus luminescens. Applied and Environmental Microbiology. 54: 1602-5. PMID 3415225  1
1986 Schmidt TM, Vinci VA, Strohl WR. Protein synthesis by Beggiatoa alba B18LD in the presence and absence of sulfide Archives of Microbiology. 144: 158-162. DOI: 10.1007/BF00414727  1
1986 Strohl WR, Schmidt TM, Vinci VA, Larkin JM. Electron transport and respiration in Beggiatoa and Vitreoscilla Archives of Microbiology. 145: 71-75. DOI: 10.1007/BF00413029  1
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