| Year |
Citation |
Score |
| 2023 |
Nakayasu ES, Gritsenko MA, Kim YM, Kyle JE, Stratton KG, Nicora CD, Munoz N, Navarro KM, Claborne D, Gao Y, Weitz KK, Paurus VL, Bloodsworth KJ, Allen KA, Bramer LM, et al. Elucidating regulatory processes of intense physical activity by multi-omics analysis. Military Medical Research. 10: 48. PMID 37853489 DOI: 10.1186/s40779-023-00477-5 |
0.695 |
|
| 2023 |
Deng S, Kim J, Pomraning KR, Gao Y, Evans JE, Hofstad BA, Dai Z, Webb-Robertson BJ, Powell SM, Novikova IV, Munoz N, Kim YM, Swita M, Robles AL, Lemmon T, et al. Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus. Metabolic Engineering. PMID 37778408 DOI: 10.1016/j.ymben.2023.09.011 |
0.73 |
|
| 2023 |
Liu D, Hwang HJ, Otoupal PB, Geiselman GM, Kim J, Pomraning KR, Kim YM, Munoz N, Nicora CD, Gao Y, Burnum-Johnson KE, Jacobson O, Coradetti S, Kim J, Deng S, et al. Engineering Rhodosporidium toruloides for production of 3-Hydroxypropionic acid from lignocellulosic Hydrolysate. Metabolic Engineering. PMID 37201565 DOI: 10.1016/j.ymben.2023.05.001 |
0.738 |
|
| 2023 |
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, ... ... Kim YM, et al. PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature Communications. 14: 2461. PMID 37117207 DOI: 10.1038/s41467-023-37031-9 |
0.749 |
|
| 2023 |
Dai Z, Pomraning KR, Deng S, Kim J, Campbell KB, Robles AL, Hofstad BA, Munoz N, Gao Y, Lemmon T, Swita MS, Zucker JD, Kim YM, Burnum-Johnson KE, Magnuson JK. Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species. Biotechnology For Biofuels and Bioproducts. 16: 53. PMID 36991437 DOI: 10.1186/s13068-023-02288-1 |
0.752 |
|
| 2023 |
Bramer LM, Hontz RD, Eisfeld AJ, Sims AC, Kim YM, Stratton KG, Nicora CD, Gritsenko MA, Schepmoes AA, Akasaka O, Koga M, Tsutsumi T, Nakamura M, Nakachi I, Baba R, et al. Multi-omics of NET formation and correlations with CNDP1, PSPB, and L-cystine levels in severe and mild COVID-19 infections. Heliyon. 9: e13795. PMID 36915486 DOI: 10.1016/j.heliyon.2023.e13795 |
0.549 |
|
| 2023 |
McNaught KJ, Kuatsjah E, Zahn M, Prates ÉT, Shao H, Bentley GJ, Pickford AR, Gruber JN, Hestmark KV, Jacobson DA, Poirier BC, Ling C, San Marchi M, Michener WE, Nicora CD, ... ... Kim YM, et al. Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440. Metabolic Engineering. PMID 36796578 DOI: 10.1016/j.ymben.2023.02.006 |
0.74 |
|
| 2022 |
Lukowski JK, Olson H, Velickovic M, Wang J, Kyle JE, Kim YM, Williams SM, Zhu Y, Huyck HL, McGraw MD, Poole C, Rogers L, Misra R, Alexandrov T, Ansong C, et al. An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue. Frontiers in Molecular Biosciences. 9: 1022775. PMID 36465564 DOI: 10.3389/fmolb.2022.1022775 |
0.286 |
|
| 2022 |
Czajka JJ, Banerjee D, Eng T, Menasalvas J, Yan C, Munoz NM, Poirier BC, Kim YM, Baker SE, Tang YJ, Mukhopadhyay A. Tuning a high performing multiplexed-CRISPRi strain to further enhance indigoidine production. Metabolic Engineering Communications. 15: e00206. PMID 36158112 DOI: 10.1016/j.mec.2022.e00206 |
0.754 |
|
| 2022 |
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Lemmon T, Swita MS, Zucker JD, Kim J, Mondo SJ, Panisko E, Burnet MC, Webb-Robertson BM, Hofstad B, et al. Itaconic acid production is regulated by LaeA in . Metabolic Engineering Communications. 15: e00203. PMID 36065328 DOI: 10.1016/j.mec.2022.e00203 |
0.762 |
|
| 2022 |
RoyChowdhury T, Bramer LM, Brown J, Kim YM, Zink E, Metz TO, McCue LA, Diefenderfer HL, Bailey V. Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland. Microorganisms. 10. PMID 36014071 DOI: 10.3390/microorganisms10081653 |
0.545 |
|
| 2022 |
Ling C, Peabody GL, Salvachúa D, Kim YM, Kneucker CM, Calvey CH, Monninger MA, Munoz NM, Poirier BC, Ramirez KJ, St John PC, Woodworth SP, Magnuson JK, Burnum-Johnson KE, Guss AM, et al. Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering. Nature Communications. 13: 4925. PMID 35995792 DOI: 10.1038/s41467-022-32296-y |
0.742 |
|
| 2022 |
Killinger BJ, Whidbey C, Sadler NC, DeLeon AJ, Munoz N, Kim YM, Wright AT. Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. Npj Biofilms and Microbiomes. 8: 60. PMID 35858888 DOI: 10.1038/s41522-022-00313-z |
0.72 |
|
| 2022 |
Smercina DN, Kim YM, Lipton MS, Velickovic D, Hofmockel KS. Bulk and Spatially Resolved Extracellular Metabolome of Free-Living Nitrogen Fixation. Applied and Environmental Microbiology. e0050522. PMID 35652664 DOI: 10.1128/aem.00505-22 |
0.308 |
|
| 2021 |
Kim YM, Petzold CJ, Kerkhoven EJ, Baker SE. Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing. Frontiers in Bioengineering and Biotechnology. 9: 818010. PMID 34976996 DOI: 10.3389/fbioe.2021.818010 |
0.199 |
|
| 2021 |
Peterson MJ, Handakumbura PP, Thompson AM, Russell ZR, Kim YM, Fansler SJ, Smith ML, Toyoda JG, Chu RK, Stanfill BA, Fransen SC, Bailey VL, Jansson C, Hixson KK, Callister SJ. Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil. Plos One. 16: e0259937. PMID 34879068 DOI: 10.1371/journal.pone.0259937 |
0.32 |
|
| 2021 |
Zamith-Miranda D, Heyman HM, Burnet MC, Couvillion SP, Zheng X, Munoz N, Nelson WC, Kyle JE, Zink EM, Weitz KK, Bloodsworth KJ, Clair G, Zucker JD, Teuton JR, Payne SH, ... Kim YM, et al. A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. Mbio. e0297221. PMID 34809453 DOI: 10.1128/mBio.02972-21 |
0.749 |
|
| 2021 |
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Kim J, Hofstad BA, Swita MS, Lemmon T, Collett JR, Panisko EA, Webb-Robertson BM, Zucker JD, Nicora CD, et al. Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in . Frontiers in Bioengineering and Biotechnology. 9: 603832. PMID 33898398 DOI: 10.3389/fbioe.2021.603832 |
0.767 |
|
| 2021 |
Kyle JE, Stratton KG, Zink EM, Kim YM, Bloodsworth KJ, Monroe ME, Waters KM, Webb-Robertson BM, Koeller DM, Metz TO. A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases. Scientific Data. 8: 114. PMID 33883556 DOI: 10.1038/s41597-021-00894-y |
0.527 |
|
| 2021 |
Zhang L, Zhang K, Li H, Coelho C, de Souza Gonçalves D, Fu MS, Li X, Nakayasu ES, Kim YM, Liao W, Pan W, Casadevall A. Cryptococcus neoformansInfected Macrophages Release Proinflammatory Extracellular Vesicles: Insight into Their Components by Multi-omics. Mbio. 12. PMID 33785616 DOI: 10.1128/mBio.00279-21 |
0.282 |
|
| 2020 |
Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Corrigendum: Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 7: 619718. PMID 33732731 DOI: 10.3389/fmolb.2020.619718 |
0.5 |
|
| 2020 |
Kim J, Coradetti ST, Kim YM, Gao Y, Yaegashi J, Zucker JD, Munoz N, Zink EM, Burnum-Johnson KE, Baker SE, Simmons BA, Skerker JM, Gladden JM, Magnuson JK. Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in . Frontiers in Bioengineering and Biotechnology. 8: 612832. PMID 33585414 DOI: 10.3389/fbioe.2020.612832 |
0.747 |
|
| 2020 |
Gao Y, Fillmore TL, Munoz N, Bentley GJ, Johnson CW, Kim J, Meadows JA, Zucker JD, Burnet MC, Lipton AK, Bilbao A, Orton DJ, Kim YM, Moore RJ, Robinson EW, et al. High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in KT2440. Frontiers in Bioengineering and Biotechnology. 8: 603488. PMID 33425868 DOI: 10.3389/fbioe.2020.603488 |
0.735 |
|
| 2020 |
Suskind DL, Lee D, Kim YM, Wahbeh G, Singh N, Braly K, Nuding M, Nicora CD, Purvine SO, Lipton MS, Jansson JK, Nelson WC. The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial. Nutrients. 12. PMID 33291229 DOI: 10.3390/nu12123749 |
0.222 |
|
| 2020 |
Chaput G, Billings AF, DeDiego L, Orellana R, Adkins JN, Nicora CD, Kim YM, Chu R, Simmons B, DeAngelis KM. Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1. Plos One. 15: e0233823. PMID 32941430 DOI: 10.1371/Journal.Pone.0233823 |
0.392 |
|
| 2020 |
Zuñiga C, Li T, Guarnieri MT, Jenkins JP, Li CT, Bingol K, Kim YM, Betenbaugh MJ, Zengler K. Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth. Nature Communications. 11: 3803. PMID 32732991 DOI: 10.1038/S41467-020-17612-8 |
0.429 |
|
| 2020 |
McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations. Scientific Reports. 10: 10882. PMID 32616808 DOI: 10.1038/S41598-020-67878-7 |
0.591 |
|
| 2020 |
Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, et al. Correction to: Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 73. PMID 32466793 DOI: 10.1186/S40168-020-00870-5 |
0.574 |
|
| 2020 |
Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn C, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, Metz TO, et al. Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 53. PMID 32299497 DOI: 10.1186/S40168-020-00817-W |
0.579 |
|
| 2020 |
Ilhan ZE, DiBaise JK, Dautel SE, Isern NG, Kim YM, Hoyt DW, Schepmoes AA, Brewer HM, Weitz KK, Metz TO, Crowell MD, Kang DW, Rittmann BE, Krajmalnik-Brown R. Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery. Npj Biofilms and Microbiomes. 6: 12. PMID 32170068 DOI: 10.1038/s41522-020-0122-5 |
0.551 |
|
| 2020 |
Nicora CD, Sims AC, Bloodsworth KJ, Kim YM, Moore RJ, Kyle JE, Nakayasu ES, Metz TO. Metabolite, Protein, and Lipid Extraction (MPLEx): A Method that Simultaneously Inactivates Middle East Respiratory Syndrome Coronavirus and Allows Analysis of Multiple Host Cell Components Following Infection. Methods in Molecular Biology (Clifton, N.J.). 2099: 173-194. PMID 31883096 DOI: 10.1007/978-1-0716-0211-9_14 |
0.619 |
|
| 2020 |
Taylor SE, Pearce CI, Sanguinet KA, Hu D, Chrisler WB, Kim Y, Wang Z, Flury M. Polystyrene nano- and microplastic accumulation at Arabidopsis and wheat root cap cells, but no evidence for uptake into roots Environmental Science. Nano. 7: 1942-1953. DOI: 10.1039/D0En00309C |
0.354 |
|
| 2019 |
Daly P, Peng M, Mitchell HD, Kim YM, Ansong C, Brewer H, de Gijsel P, Lipton MS, Markillie LM, Nicora CD, Orr G, Wiebenga A, Hildén KS, Kabel MA, Baker SE, et al. Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environmental Microbiology. PMID 31876091 DOI: 10.1111/1462-2920.14907 |
0.308 |
|
| 2019 |
Webb-Robertson BM, Stratton KG, Kyle JE, Kim YM, Bramer LM, Waters KM, Koeller D, Metz TO. Statistically-driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network. Analytical Chemistry. PMID 31742994 DOI: 10.1021/Acs.Analchem.9B03522 |
0.598 |
|
| 2019 |
Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 6: 108. PMID 31681796 DOI: 10.3389/Fmolb.2019.00108 |
0.578 |
|
| 2019 |
Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, et al. Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations. Msystems. 4. PMID 31186334 DOI: 10.1128/mSystems.00061-19 |
0.545 |
|
| 2019 |
Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, et al. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. Cell. 177: 1600-1618.e17. PMID 31150625 DOI: 10.1016/J.Cell.2019.05.004 |
0.523 |
|
| 2019 |
Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, et al. Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle. Nature Microbiology. PMID 30858574 DOI: 10.1038/S41564-019-0384-Y |
0.454 |
|
| 2019 |
Rivas-Ubach A, Liu Y, Steiner AL, Sardans J, Tfaily MM, Kulkarni G, Kim YM, Bourrianne E, Paša-Tolić L, Peñuelas J, Guenther A. Atmo-ecometabolomics: a novel atmospheric particle chemical characterization methodology for ecological research. Environmental Monitoring and Assessment. 191: 78. PMID 30649631 DOI: 10.1007/S10661-019-7205-X |
0.392 |
|
| 2018 |
Daly P, Casado López S, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, et al. Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environmental Microbiology. PMID 30246402 DOI: 10.1111/1462-2920.14416 |
0.384 |
|
| 2018 |
Rosnow JJ, Hwang S, Killinger BJ, Kim YM, Moore RJ, Lindemann SR, Maupin-Furlow JA, Wright AT. Cobalamin activity-based probe enables microbial cell growth and finds new cobalamin-protein interactions across domains. Applied and Environmental Microbiology. PMID 30006406 DOI: 10.1128/Aem.00955-18 |
0.375 |
|
| 2018 |
Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343 |
0.633 |
|
| 2018 |
Kim YM, Heyman HM. Mass Spectrometry-Based Metabolomics. Methods in Molecular Biology (Clifton, N.J.). 1775: 107-118. PMID 29876813 DOI: 10.1007/978-1-4939-7804-5_10 |
0.447 |
|
| 2018 |
Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR. Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae. International Journal of Systematic and Evolutionary Microbiology. 68: 2116-2123. PMID 29855404 DOI: 10.1099/Ijsem.0.002807 |
0.575 |
|
| 2018 |
Xu L, Naylor D, Dong Z, Simmons T, Pierroz G, Hixson KK, Kim YM, Zink EM, Engbrecht KM, Wang Y, Gao C, DeGraaf S, Madera MA, Sievert JA, Hollingsworth J, et al. Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 29666229 DOI: 10.1073/Pnas.1717308115 |
0.397 |
|
| 2018 |
Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR. Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae. International Journal of Systematic and Evolutionary Microbiology. PMID 29580321 DOI: 10.1099/Ijsem.0.002715 |
0.575 |
|
| 2018 |
Khosravi C, Battaglia E, Kun RS, Dalhuijsen S, Visser J, Aguilar-Pontes MV, Zhou M, Heyman HM, Kim YM, Baker SE, de Vries RP. Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans. Bmc Genomics. 19: 214. PMID 29566661 DOI: 10.1186/s12864-018-4609-x |
0.373 |
|
| 2018 |
Moghieb A, Clair G, Mitchell H, Kitzmiller JA, Zink EM, Kim YM, Petyuk V, Shukla AK, Moore RJ, Metz TO, Carson JP, McDermott JE, Corley RA, Whitsett JA, Ansong C. Time-resolved Proteome Profiling of Normal Lung Development. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 29516783 DOI: 10.1152/Ajplung.00316.2017 |
0.568 |
|
| 2018 |
Wu J, Sabag-Daigle A, Borton MA, Kop LFM, Szkoda BE, Deatherage Kaiser BL, Lindemann SR, Renslow RS, Wei S, Nicora CD, Weitz KK, Kim YM, Adkins JN, Metz TO, Boyaka P, et al.
-mediated inflammation eliminates competitors for fructose-asparagine in the gut. Infection and Immunity. PMID 29483291 DOI: 10.1128/Iai.00945-17 |
0.548 |
|
| 2018 |
Oláhová M, Yoon WH, Thompson K, Jangam S, Fernandez L, Davidson JM, Kyle JE, Grove ME, Fisk DG, Kohler JN, Holmes M, Dries AM, Huang Y, Zhao C, Contrepois K, ... ... Kim YM, et al. Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder. American Journal of Human Genetics. PMID 29478781 DOI: 10.1016/J.Ajhg.2018.01.020 |
0.564 |
|
| 2018 |
RoyChowdhury T, Bramer L, Hoyt DW, Kim Y, Metz TO, McCue LA, Diefenderfer HL, Jansson JK, Bailey V. Temporal dynamics of CO2 and CH4 loss potentials in response to rapid hydrological shifts in tidal freshwater wetland soils Ecological Engineering. 114: 104-114. DOI: 10.1016/J.Ecoleng.2017.06.041 |
0.587 |
|
| 2017 |
Eisfeld AJ, Halfmann PJ, Wendler JP, Kyle JE, Burnum-Johnson KE, Peralta Z, Maemura T, Walters KB, Watanabe T, Fukuyama S, Yamashita M, Jacobs JM, Kim YM, Casey CP, Stratton KG, et al. Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis. Cell Host & Microbe. PMID 29154144 DOI: 10.1016/J.Chom.2017.10.011 |
0.614 |
|
| 2017 |
Kerkhoven EJ, Kim YM, Wei S, Nicora CD, Fillmore TL, Purvine SO, Webb-Robertson BJ, Smith RD, Baker SE, Metz TO, Nielsen J. Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica. Mbio. 8. PMID 28634240 DOI: 10.1128/Mbio.00857-17 |
0.663 |
|
| 2017 |
Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS. Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership. Msystems. 2. PMID 28289730 DOI: 10.1128/mSystems.00181-16 |
0.368 |
|
| 2017 |
Dautel SE, Kyle JE, Clair G, Sontag RL, Weitz KK, Shukla AK, Nguyen SN, Kim YM, Zink EM, Luders T, Frevert CW, Gharib SA, Laskin J, Carson JP, Metz TO, et al. Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung. Scientific Reports. 7: 40555. PMID 28145528 DOI: 10.1038/Srep40555 |
0.57 |
|
| 2017 |
Romine MF, Rodionov DA, Maezato Y, Anderson LN, Nandhikonda P, Rodionova IA, Carre A, Li X, Xu C, Clauss TR, Kim YM, Metz TO, Wright AT. Elucidation of roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137868 DOI: 10.1073/Pnas.1612360114 |
0.585 |
|
| 2017 |
Burnum-Johnson KE, Kyle JE, Eisfeld AJ, Casey CP, Stratton KG, Gonzalez JF, Habyarimana F, Negretti NM, Sims AC, Chauhan S, Thackray LB, Halfmann PJ, Walters KB, Kim YM, Zink EM, et al. MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling. The Analyst. PMID 28091625 DOI: 10.1039/C6An02486F |
0.61 |
|
| 2017 |
White RA, Rivas-Ubach A, Borkum MI, Köberl M, Bilbao A, Colby SM, Hoyt DW, Bingol K, Kim Y, Wendler JP, Hixson KK, Jansson C. The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies Rhizosphere. 3: 212-221. DOI: 10.1016/J.Rhisph.2017.05.003 |
0.404 |
|
| 2016 |
Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/J.Clinms.2016.11.002 |
0.643 |
|
| 2016 |
Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/Rcm.7808 |
0.478 |
|
| 2016 |
Snijders AM, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, et al. Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nature Microbiology. 2: 16221. PMID 27892936 DOI: 10.1038/Nmicrobiol.2016.221 |
0.606 |
|
| 2016 |
Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. Msystems. 1. PMID 27822525 DOI: 10.1128/mSystems.00043-16 |
0.62 |
|
| 2016 |
Rivas-Ubach A, Hódar JA, Sardans J, Kyle JE, Kim YM, Oravec M, Urban O, Guenther A, Peñuelas J. Are the metabolomic responses to folivory of closely related plant species linked to macroevolutionary and plant-folivore coevolutionary processes? Ecology and Evolution. 6: 4372-4386. PMID 27386082 DOI: 10.1002/Ece3.2206 |
0.276 |
|
| 2016 |
Pomraning KR, Kim YM, Nicora CD, Chu RK, Bredeweg EL, Purvine SO, Hu D, Metz TO, Baker SE. Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica. Bmc Genomics. 17: 138. PMID 26911370 DOI: 10.1186/S12864-016-2471-2 |
0.587 |
|
| 2016 |
Tisoncik-Go J, Gasper DJ, Kyle JE, Eisfeld AJ, Selinger C, Hatta M, Morrison J, Korth MJ, Zink EM, Kim YM, Schepmoes AA, Nicora CD, Purvine SO, Weitz KK, Peng X, et al. Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism. Cell Host & Microbe. 19: 254-66. PMID 26867183 DOI: 10.1016/J.Chom.2016.01.002 |
0.625 |
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| 2016 |
Rivas-Ubach A, Liu Y, Sardans J, Tfaily MM, Kim Y, Bourrianne E, Paša-Tolić L, Peñuelas J, Guenther A. Atmo-metabolomics: a new measurement approach for investigating aerosol composition and ecosystem functioning Atmospheric Measurement Techniques Discussions. 1-42. DOI: 10.5194/Amt-2016-209 |
0.435 |
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| 2015 |
Lovelace ES, Wagoner J, MacDonald J, Bammler T, Bruckner J, Brownell J, Beyer RP, Zink EM, Kim YM, Kyle JE, Webb-Robertson BJ, Waters KM, Metz TO, Farin F, Oberlies NH, et al. Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling. Journal of Natural Products. 78: 1990-2000. PMID 26186142 DOI: 10.1021/acs.jnatprod.5b00288 |
0.601 |
|
| 2015 |
Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Frontiers in Microbiology. 6: 209. PMID 25941514 DOI: 10.3389/Fmicb.2015.00209 |
0.642 |
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| 2015 |
Pomraning KR, Wei S, Karagiosis SA, Kim YM, Dohnalkova AC, Arey BW, Bredeweg EL, Orr G, Metz TO, Baker SE. Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis. Plos One. 10: e0123188. PMID 25905710 DOI: 10.1371/Journal.Pone.0123188 |
0.601 |
|
| 2014 |
Boaro AA, Kim YM, Konopka AE, Callister SJ, Ahring BK. Integrated 'omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture. Fems Microbiology Ecology. 90: 802-15. PMID 25290699 DOI: 10.1111/1574-6941.12435 |
0.405 |
|
| 2014 |
Webb-Robertson BJ, Kim YM, Zink EM, Hallaian KA, Zhang Q, Madupu R, Waters KM, Metz TO. A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry. Metabolomics : Official Journal of the Metabolomic Society. 10: 897-908. PMID 25254001 DOI: 10.1007/S11306-014-0642-1 |
0.703 |
|
| 2014 |
Huang EL, Aylward FO, Kim YM, Webb-Robertson BJ, Nicora CD, Hu Z, Metz TO, Lipton MS, Smith RD, Currie CR, Burnum-Johnson KE. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environmental Microbiology Reports. 6: 389-95. PMID 24992538 DOI: 10.1111/1758-2229.12163 |
0.623 |
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| 2014 |
Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Frontiers in Microbiology. 5: 109. PMID 24778628 DOI: 10.3389/Fmicb.2014.00109 |
0.602 |
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| 2014 |
Anderson JC, Wan Y, Kim YM, Pasa-Tolic L, Metz TO, Peck SC. Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae. Proceedings of the National Academy of Sciences of the United States of America. 111: 6846-51. PMID 24753604 DOI: 10.1073/Pnas.1403248111 |
0.544 |
|
| 2013 |
Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN. A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection. Plos One. 8: e67155. PMID 23840608 DOI: 10.1371/Journal.Pone.0067155 |
0.6 |
|
| 2013 |
Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, et al. Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes. Molecular Biosystems. 9: 1522-34. PMID 23559334 DOI: 10.1039/C3Mb25598K |
0.676 |
|
| 2013 |
Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, et al. A multi-omic systems approach to elucidating Yersinia virulence mechanisms. Molecular Biosystems. 9: 44-54. PMID 23147219 DOI: 10.1039/C2Mb25287B |
0.613 |
|
| 2013 |
Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, et al. Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling. Current Topics in Microbiology and Immunology. 363: 21-41. PMID 22886542 DOI: 10.1007/82_2012_247 |
0.607 |
|
| 2012 |
Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO. Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation. Molecular Systems Biology. 8: 558. PMID 22735334 DOI: 10.1038/Msb.2012.21 |
0.63 |
|
| 2012 |
Hu ZP, Kim YM, Sowa MB, Robinson RJ, Gao X, Metz TO, Morgan WF, Zhang Q. Metabolomic response of human skin tissue to low dose ionizing radiation. Molecular Biosystems. 8: 1979-86. PMID 22610363 DOI: 10.1039/C2Mb25061F |
0.691 |
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| 2012 |
Lindemann S, Moran J, Dohnalkova A, Kim Y, Kennedy D, Stolyar S, Majors P, Wiley H, Konopka A, Fredrickson J. Microbial Diversity and Biogeochemical Function of the Phototrophic Microbial Mats of Epsomitic Hot Lake, WA Microscopy and Microanalysis. 18: 10-11. DOI: 10.1017/S1431927612001900 |
0.373 |
|
| 2011 |
Kim YM, Metz TO, Hu Z, Wiedner SD, Kim JS, Smith RD, Morgan WF, Zhang Q. Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics. Rapid Communications in Mass Spectrometry : Rcm. 25: 2561-4. PMID 21910289 DOI: 10.1002/Rcm.5134 |
0.711 |
|
| 2011 |
Kim YM, Murugesan K, Schmidt S, Bokare V, Jeon JR, Kim EJ, Chang YS. Triclosan susceptibility and co-metabolism--a comparison for three aerobic pollutant-degrading bacteria. Bioresource Technology. 102: 2206-12. PMID 21041079 DOI: 10.1016/j.biortech.2010.10.009 |
0.511 |
|
| 2010 |
Jeon JR, Kim EJ, Murugesan K, Park HK, Kim YM, Kwon JH, Kim WG, Lee JY, Chang YS. Laccase-catalysed polymeric dye synthesis from plant-derived phenols for potential application in hair dyeing: Enzymatic colourations driven by homo- or hetero-polymer synthesis. Microbial Biotechnology. 3: 324-35. PMID 21255331 DOI: 10.1111/j.1751-7915.2009.00153.x |
0.507 |
|
| 2010 |
Kim EJ, Jeon JR, Kim YM, Murugesan K, Chang YS. Mineralization and transformation of monofluorophenols by Pseudonocardia benzenivorans. Applied Microbiology and Biotechnology. 87: 1569-77. PMID 20473664 DOI: 10.1007/s00253-010-2647-7 |
0.548 |
|
| 2010 |
Bokare V, Murugesan K, Kim YM, Jeon JR, Kim EJ, Chang YS. Degradation of triclosan by an integrated nano-bio redox process. Bioresource Technology. 101: 6354-60. PMID 20381343 DOI: 10.1016/j.biortech.2010.03.062 |
0.5 |
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| 2010 |
Murugesan K, Chang YY, Kim YM, Jeon JR, Kim EJ, Chang YS. Enhanced transformation of triclosan by laccase in the presence of redox mediators. Water Research. 44: 298-308. PMID 19854464 DOI: 10.1016/j.watres.2009.09.058 |
0.509 |
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| 2009 |
Jeon JR, Kim EJ, Kim YM, Murugesan K, Kim JH, Chang YS. Use of grape seed and its natural polyphenol extracts as a natural organic coagulant for removal of cationic dyes. Chemosphere. 77: 1090-8. PMID 19786292 DOI: 10.1016/j.chemosphere.2009.08.036 |
0.473 |
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| 2009 |
Murugesan K, Kim YM, Jeon JR, Chang YS. Effect of metal ions on reactive dye decolorization by laccase from Ganoderma lucidum. Journal of Hazardous Materials. 168: 523-9. PMID 19356850 DOI: 10.1016/j.jhazmat.2009.02.075 |
0.445 |
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| 2009 |
Murugesan K, Yang IH, Kim YM, Jeon JR, Chang YS. Enhanced transformation of malachite green by laccase of Ganoderma lucidum in the presence of natural phenolic compounds. Applied Microbiology and Biotechnology. 82: 341-50. PMID 19130052 DOI: 10.1007/s00253-008-1819-1 |
0.488 |
|
| 2009 |
Kim YM, Jeon JR, Murugesan K, Kim EJ, Chang YS. Biodegradation of 1,4-dioxane and transformation of related cyclic compounds by a newly isolated Mycobacterium sp. PH-06. Biodegradation. 20: 511-9. PMID 19085063 DOI: 10.1007/s10532-008-9240-0 |
0.51 |
|
| 2008 |
Jeon JR, Murugesan K, Kim YM, Kim EJ, Chang YS. Synergistic effect of laccase mediators on pentachlorophenol removal by Ganoderma lucidum laccase. Applied Microbiology and Biotechnology. 81: 783-90. PMID 18987855 DOI: 10.1007/s00253-008-1753-2 |
0.477 |
|
| 2008 |
Nam IH, Kim YM, Murugesan K, Jeon JR, Chang YY, Chang YS. Bioremediation of PCDD/Fs-contaminated municipal solid waste incinerator fly ash by a potent microbial biocatalyst. Journal of Hazardous Materials. 157: 114-21. PMID 18258362 DOI: 10.1016/j.jhazmat.2007.12.086 |
0.518 |
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| 2007 |
Kim YM, Nam IH, Murugesan K, Schmidt S, Crowley DE, Chang YS. Biodegradation of diphenyl ether and transformation of selected brominated congeners by Sphingomonas sp. PH-07. Applied Microbiology and Biotechnology. 77: 187-94. PMID 17694301 DOI: 10.1007/s00253-007-1129-z |
0.536 |
|
| 2007 |
Hong HB, Nam IH, Kim YM, Chang YS, Schmidt S. Effect of heavy metals on the biodegradation of dibenzofuran in liquid medium. Journal of Hazardous Materials. 140: 145-8. PMID 16879920 DOI: 10.1016/j.jhazmat.2006.06.049 |
0.456 |
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| 2006 |
Nam IH, Hong HB, Kim YM, Kim BH, Murugesan K, Chang YS. Author's reply to comment on "Biological removal of polychlorinated dibenzo-p-dioxins from incinerator fly ash by sphingomonas wittichii RW1" by Rolf U. Halden. Water Research. 40: 2246-7. PMID 16712898 DOI: 10.1016/j.watres.2006.03.031 |
0.44 |
|
| 2006 |
Murugesan K, Arulmani M, Nam IH, Kim YM, Chang YS, Kalaichelvan PT. Purification and characterization of laccase produced by a white rot fungus Pleurotus sajor-caju under submerged culture condition and its potential in decolorization of azo dyes. Applied Microbiology and Biotechnology. 72: 939-46. PMID 16568314 DOI: 10.1007/s00253-006-0403-9 |
0.493 |
|
| 2006 |
Nam IH, Kim YM, Schmidt S, Chang YS. Biotransformation of 1,2,3-tri- and 1,2,3,4,7,8-hexachlorodibenzo-p- dioxin by Sphingomonas wittichii strain RW1. Applied and Environmental Microbiology. 72: 112-6. PMID 16391032 DOI: 10.1128/AEM.72.1.112-116.2006 |
0.479 |
|
| 2005 |
Nam IH, Hong HB, Kim YM, Kim BH, Murugesan K, Chang YS. Biological removal of polychlorinated dibenzo-p-dioxins from incinerator fly ash by Sphingomonas wittichii RW1. Water Research. 39: 4651-60. PMID 16256169 DOI: 10.1016/j.watres.2005.09.009 |
0.487 |
|
| 2004 |
Hong HB, Nam IH, Murugesan K, Kim YM, Chang YS. Biodegradation of dibenzo-p-dioxin, dibenzofuran, and chlorodibenzo-p-dioxins by Pseudomonas veronii PH-03. Biodegradation. 15: 303-13. PMID 15523913 |
0.524 |
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