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Florent Murat - Publications

Affiliations: 
Clermont-Ferrand 2 
Area:
Plants, Evolution, Structure, Comparative genomics, Ancestors, Genes, Karyotypes, Chromosomes, Polyploidization, Diploidization, Diversity, Angiosperms, Monocots, Dicots, Cereals, Brassicaceae
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Murat F, Mbengue N, Winge SB, Trefzer T, Leushkin E, Sepp M, Cardoso-Moreira M, Schmidt J, Schneider C, Mößinger K, Brüning T, Lamanna F, Belles MR, Conrad C, Kondova I, et al. The molecular evolution of spermatogenesis across mammals. Nature. PMID 36544022 DOI: 10.1038/s41586-022-05547-7  0.328
2022 Merdrignac C, Clément AE, Montfort J, Murat F, Bobe J. Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication. Cells. 11. PMID 36078102 DOI: 10.3390/cells11172694  0.374
2018 Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, et al. Oak genome reveals facets of long lifespan. Nature Plants. PMID 29915331 DOI: 10.1038/S41477-018-0172-3  0.762
2017 Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, et al. The P. patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal : For Cell and Molecular Biology. PMID 29237241 DOI: 10.1111/Tpj.13801  0.813
2017 Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 546: 148-152. PMID 28538728 DOI: 10.1038/Nature22380  0.773
2017 Murat F, Armero A, Pont C, Klopp C, Salse J. Reconstructing the genome of the most recent common ancestor of flowering plants. Nature Genetics. PMID 28288112 DOI: 10.1038/Ng.3813  0.793
2016 El Baidouri M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). The New Phytologist. PMID 27551821 DOI: 10.1111/Nph.14113  0.744
2016 Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Crollius HR, Salse J. Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 17: 64. PMID 27044591 DOI: 10.1186/S13059-016-0887-2  0.65
2015 Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Crollius HR, Salse J. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 16: 262. PMID 26653025 DOI: 10.1186/S13059-015-0814-Y  0.804
2015 de Miguel M, Bartholomé J, Ehrenmann F, Murat F, Moriguchi Y, Uchiyama K, Ueno S, Tsumura Y, Lagraulet H, de Maria N, Cabezas JA, Cervera MT, Gion JM, Salse J, Plomion C. Evidence of intense chromosomal shuffling during conifer evolution. Genome Biology and Evolution. PMID 26400405 DOI: 10.1093/Gbe/Evv185  0.775
2015 Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, ... ... Murat F, et al. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources. PMID 25944057 DOI: 10.1111/1755-0998.12425  0.774
2015 Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, et al. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Bmc Genomics. 16: 112. PMID 25765701 DOI: 10.1186/S12864-015-1331-9  0.797
2015 Murat F, Zhang R, Guizard S, Gavranovi? H, Flores R, Steinbach D, Quesneville H, Tannier E, Salse J. Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops. Genome Biology and Evolution. 7: 735-49. PMID 25637221 DOI: 10.1093/Gbe/Evv014  0.809
2015 Louis A, Murat F, Salse J, Crollius HR. GenomicusPlants: a web resource to study genome evolution in flowering plants. Plant & Cell Physiology. 56: e4. PMID 25432975 DOI: 10.1093/Pcp/Pcu177  0.809
2015 Dobrovolskaya O, Pont C, Sibout R, Martinek P, Badaeva E, Murat F, Chosson A, Watanabe N, Prat E, Gautier N, Gautier V, Poncet C, Orlov YL, Krasnikov AA, Bergès H, et al. FRIZZY PANICLE drives supernumerary spikelets in bread wheat. Plant Physiology. 167: 189-99. PMID 25398545 DOI: 10.1104/Pp.114.250043  0.647
2014 Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, ... ... Murat F, et al. The genome of Eucalyptus grandis. Nature. 510: 356-62. PMID 24919147 DOI: 10.1038/Nature13308  0.796
2014 Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/Nbt.2906  0.749
2014 Zhang R, Murat F, Pont C, Langin T, Salse J. Paleo-evolutionary plasticity of plant disease resistance genes. Bmc Genomics. 15: 187. PMID 24617999 DOI: 10.1186/1471-2164-15-187  0.728
2014 Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes. Genome Biology and Evolution. 6: 12-33. PMID 24317974 DOI: 10.1093/Gbe/Evt200  0.772
2014 Murat F, Pont C, Salse J. Paleogenomics in Triticeae for translational research Current Plant Biology. 1: 34-39. DOI: 10.1016/J.Cpb.2014.08.003  0.793
2013 Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, et al. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal : For Cell and Molecular Biology. 76: 1030-44. PMID 24164652 DOI: 10.1111/Tpj.12366  0.818
2013 Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nature Genetics. 45: 51-8. PMID 23179023 DOI: 10.1038/Ng.2470  0.808
2012 Bodénès C, Chancerel E, Gailing O, Vendramin GG, Bagnoli F, Durand J, Goicoechea PG, Soliani C, Villani F, Mattioni C, Koelewijn HP, Murat F, Salse J, Roussel G, Boury C, et al. Comparative mapping in the Fagaceae and beyond with EST-SSRs. Bmc Plant Biology. 12: 153. PMID 22931513 DOI: 10.1186/1471-2229-12-153  0.637
2012 Murat F, Van de Peer Y, Salse J. Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes. Genome Biology and Evolution. 4: 917-28. PMID 22833223 DOI: 10.1093/Gbe/Evs066  0.787
2012 Dibari B, Murat F, Chosson A, Gautier V, Poncet C, Lecomte P, Mercier I, Bergès H, Pont C, Blanco A, Salse J. Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses. Bmc Genomics. 13: 221. PMID 22672222 DOI: 10.1186/1471-2164-13-221  0.714
2012 Abrouk M, Zhang R, Murat F, Li A, Pont C, Mao L, Salse J. Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication. The Plant Cell. 24: 1776-92. PMID 22589464 DOI: 10.1105/Tpc.112.095752  0.764
2011 Bordat A, Savois V, Nicolas M, Salse J, Chauveau A, Bourgeois M, Potier J, Houtin H, Rond C, Murat F, Marget P, Aubert G, Burstin J. Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L. G3 (Bethesda, Md.). 1: 93-103. PMID 22384322 DOI: 10.1534/G3.111.000349  0.769
2011 Pont C, Murat F, Confolent C, Balzergue S, Salse J. RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biology. 12: R119. PMID 22136458 DOI: 10.1186/Gb-2011-12-12-R119  0.722
2011 Mayer KF, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, et al. Unlocking the barley genome by chromosomal and comparative genomics. The Plant Cell. 23: 1249-63. PMID 21467582 DOI: 10.1105/Tpc.110.082537  0.806
2011 Quraishi UM, Abrouk M, Murat F, Pont C, Foucrier S, Desmaizieres G, Confolent C, Riviaère N, Charmet G, Paux E, Murigneux A, Guerreiro L, Lafarge S, Le Gouis J, Feuillet C, et al. Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution Plant Journal. 65: 745-756. PMID 21251102 DOI: 10.1111/J.1365-313X.2010.04461.X  0.829
2011 Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736  0.827
2011 Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, et al. Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional & Integrative Genomics. 11: 71-83. PMID 20697765 DOI: 10.1007/S10142-010-0183-2  0.782
2010 Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, et al. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. Bmc Genomics. 11: 650. PMID 21092232 DOI: 10.1186/1471-2164-11-650  0.759
2010 Murat F, Xu JH, Tannier E, Abrouk M, Guilhot N, Pont C, Messing J, Salse J. Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Genome Research. 20: 1545-57. PMID 20876790 DOI: 10.1101/Gr.109744.110  0.842
2010 Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J. Palaeogenomics of plants: synteny-based modelling of extinct ancestors. Trends in Plant Science. 15: 479-87. PMID 20638891 DOI: 10.1016/J.Tplants.2010.06.001  0.843
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Murat F, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.778
2010 Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1  0.787
2009 Salse J, Abrouk M, Murat F, Quraishi UM, Feuillet C. Improved criteria and comparative genomics tool provide new insights into grass paleogenomics Briefings in Bioinformatics. 10: 619-630. PMID 19720678 DOI: 10.1093/Bib/Bbp037  0.84
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