David E. Graham - Publications

Affiliations: 
2000 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
 2003-2009 University of Texas at Austin, Austin, Texas, U.S.A. 

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Yang Z, Fang W, Lu X, Sheng GP, Graham DE, Liang L, Wullschleger SD, Gu B. Warming increases methylmercury production in an Arctic soil. Environmental Pollution (Barking, Essex : 1987). 214: 504-509. PMID 27131808 DOI: 10.1016/J.Envpol.2016.04.069  0.56
2016 Moon JW, Phelps TJ, Fitzgerald CL, Lind RF, Elkins JG, Jang GG, Joshi PC, Kidder M, Armstrong BL, Watkins TR, Ivanov IN, Graham DE. Manufacturing demonstration of microbially mediated zinc sulfide nanoparticles in pilot-plant scale reactors. Applied Microbiology and Biotechnology. PMID 27118014 DOI: 10.1007/S00253-016-7556-Y  0.56
2016 Tang G, Zheng J, Xu X, Yang Z, Graham DE, Gu B, Painter SL, Thornton PE. Biogeochemical modeling of CO2 and CH4 production in anoxic Arctic soil microcosms Biogeosciences. 13: 5021-5041. DOI: 10.5194/Bg-13-5021-2016  0.56
2016 Yang Z, Wullschleger SD, Liang L, Graham DE, Gu B. Effects of warming on the degradation and production of low-molecular-weight labile organic carbon in an Arctic tundra soil Soil Biology and Biochemistry. 95: 202-211. DOI: 10.1016/J.Soilbio.2015.12.022  0.56
2015 Wan Q, Parks JM, Hanson BL, Fisher SZ, Ostermann A, Schrader TE, Graham DE, Coates L, Langan P, Kovalevsky A. Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography. Proceedings of the National Academy of Sciences of the United States of America. PMID 26392527 DOI: 10.1073/Pnas.1504986112  0.56
2015 Mann BF, Chen H, Herndon EM, Chu RK, Tolic N, Portier EF, Roy Chowdhury T, Robinson EW, Callister SJ, Wullschleger SD, Graham DE, Liang L, Gu B. Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry. Plos One. 10: e0130557. PMID 26068586 DOI: 10.1371/Journal.Pone.0130557  0.56
2015 Roy Chowdhury T, Herndon EM, Phelps TJ, Elias DA, Gu B, Liang L, Wullschleger SD, Graham DE. Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska. Global Change Biology. 21: 722-37. PMID 25308891 DOI: 10.1111/Gcb.12762  0.56
2015 Jang GG, Jacobs CB, Ivanov IN, Joshi PC, Meyer HM, Kidder M, Armstrong BL, Datskos PG, Graham DE, Moon JW. In situ capping for size control of monochalcogenide (ZnS, CdS and SnS) nanocrystals produced by anaerobic metal-reducing bacteria Nanotechnology. 26. DOI: 10.1088/0957-4484/26/32/325602  0.56
2015 Jang GG, Jacobs CB, Gresback RG, Ivanov IN, Meyer HM, Kidder M, Joshi PC, Jellison GE, Phelps TJ, Graham DE, Moon JW. Size tunable elemental copper nanoparticles: Extracellular synthesis by thermoanaerobic bacteria and capping molecules Journal of Materials Chemistry C. 3: 644-650. DOI: 10.1039/C4Tc02356K  0.56
2015 Herndon EM, Yang Z, Bargar J, Janot N, Regier TZ, Graham DE, Wullschleger SD, Gu B, Liang L. Geochemical drivers of organic matter decomposition in arctic tundra soils Biogeochemistry. 126: 397-414. DOI: 10.1007/S10533-015-0165-5  0.56
2015 Herndon EM, Mann BF, Roy Chowdhury T, Yang Z, Wullschleger SD, Graham D, Liang L, Gu B. Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska Journal of Geophysical Research G: Biogeosciences. DOI: 10.1002/2015Jg003147  0.56
2015 Xu X, Elias DA, Graham DE, Phelps TJ, Carroll SL, Wullschleger SD, Thornton PE. A microbial functional group-based module for simulating methane production and consumption: Application to an incubated permafrost soil Journal of Geophysical Research G: Biogeosciences. 120: 1315-1333. DOI: 10.1002/2015Jg002935  0.56
2015 Heikoop JM, Throckmorton HM, Newman BD, Perkins GB, Iversen CM, Roy Chowdhury T, Romanovsky V, Graham DE, Norby RJ, Wilson CJ, Wullschleger SD. Isotopic identification of soil and permafrost nitrate sources in an Arctic tundra ecosystem Journal of Geophysical Research G: Biogeosciences. DOI: 10.1002/2014Jg002883  0.56
2015 Newman BD, Throckmorton HM, Graham DE, Gu B, Hubbard SS, Liang L, Wu Y, Heikoop JM, Herndon EM, Phelps TJ, Wilson CJ, Wullschleger SD. Microtopographic and depth controls on active layer chemistry in Arctic polygonal ground Geophysical Research Letters. 42: 1808-1817. DOI: 10.1002/2014Gl062804  0.56
2014 Langan P, Sangha AK, Wymore T, Parks JM, Yang ZK, Hanson BL, Fisher Z, Mason SA, Blakeley MP, Forsyth VT, Glusker JP, Carrell HL, Smith JC, Keen DA, Graham DE, et al. L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study. Structure (London, England : 1993). 22: 1287-300. PMID 25132082 DOI: 10.1016/J.Str.2014.07.002  0.56
2014 Wan Q, Zhang Q, Hamilton-Brehm S, Weiss K, Mustyakimov M, Coates L, Langan P, Graham D, Kovalevsky A. X-ray crystallographic studies of family 11 xylanase Michaelis and product complexes: implications for the catalytic mechanism. Acta Crystallographica. Section D, Biological Crystallography. 70: 11-23. PMID 24419374 DOI: 10.1107/S1399004713023626  0.56
2012 Li Y, Tschaplinski TJ, Engle NL, Hamilton CY, Rodriguez M, Liao JC, Schadt CW, Guss AM, Yang Y, Graham DE. Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations. Biotechnology For Biofuels. 5: 2. PMID 22214220 DOI: 10.1186/1754-6834-5-2  0.56
2012 Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, et al. Microbes in thawing permafrost: the unknown variable in the climate change equation. The Isme Journal. 6: 709-12. PMID 22094350 DOI: 10.1038/Ismej.2011.163  0.56
2011 Lochner A, Giannone RJ, Keller M, Antranikian G, Graham DE, Hettich RL. Label-free quantitative proteomics for the extremely thermophilic bacterium Caldicellulosiruptor obsidiansis reveal distinct abundance patterns upon growth on cellobiose, crystalline cellulose, and switchgrass. Journal of Proteome Research. 10: 5302-14. PMID 21988591 DOI: 10.1021/Pr200536J  0.56
2011 Lochner A, Giannone RJ, Rodriguez M, Shah MB, Mielenz JR, Keller M, Antranikian G, Graham DE, Hettich RL. Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis. Applied and Environmental Microbiology. 77: 4042-54. PMID 21498747 DOI: 10.1128/Aem.02811-10  0.56
2011 Graham DE. 2-oxoacid metabolism in methanogenic CoM and CoB biosynthesis Methods in Enzymology. 494: 301-326. PMID 21402221 DOI: 10.1016/B978-0-12-385112-3.00015-9  0.56
2010 Elkins JG, Lochner A, Hamilton-Brehm SD, Davenport KW, Podar M, Brown SD, Land ML, Hauser LJ, Klingeman DM, Raman B, Goodwin LA, Tapia R, Meincke LJ, Detter JC, Bruce DC, ... ... Graham DE, et al. Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T. Journal of Bacteriology. 192: 6099-100. PMID 20851897 DOI: 10.1128/Jb.00950-10  0.56
2009 Zhou L, Zhao M, Wolf RZ, Graham DE, Georgiou G. Transcriptional regulation of the Escherichia coli gene rraB, encoding a protein inhibitor of RNase E Journal of Bacteriology. 191: 6665-6674. PMID 19717586 DOI: 10.1128/Jb.00344-09  0.56
2009 Giles TN, Fisher DJ, Graham DE. Independent inactivation of arginine decarboxylase genes by nonsense and missense mutations led to pseudogene formation in Chlamydia trachomatis serovar L2 and D strains. Bmc Evolutionary Biology. 9: 166. PMID 19607664 DOI: 10.1186/1471-2148-9-166  0.56
2009 Boyd JM, Drevland RM, Downs DM, Graham DE. Archaeal ApbC/Nbp35 homologs function as iron-sulfur cluster carrier proteins. Journal of Bacteriology. 191: 1490-7. PMID 19114487 DOI: 10.1128/Jb.01469-08  0.56
2008 Smith CB, Graham DE. Outer and inner membrane proteins compose an arginine-agmatine exchange system in Chlamydophila pneumoniae. Journal of Bacteriology. 190: 7431-40. PMID 18790867 DOI: 10.1128/Jb.00652-08  0.56
2008 Giles TN, Graham DE. Crenarchaeal arginine decarboxylase evolved from an S-adenosylmethionine decarboxylase enzyme. The Journal of Biological Chemistry. 283: 25829-38. PMID 18650422 DOI: 10.1074/Jbc.M802674200  1
2008 Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proceedings of the National Academy of Sciences of the United States of America. 105: 8102-7. PMID 18535141 DOI: 10.1073/Pnas.0801980105  0.56
2007 Giles TN, Graham DE. Characterization of an acid-dependent arginine decarboxylase enzyme from Chlamydophila pneumoniae. Journal of Bacteriology. 189: 7376-83. PMID 17693492 DOI: 10.1128/Jb.00772-07  1
2007 Lee C, Kramer G, Graham DE, Appling DR. Yeast mitochondrial initiator tRNA is methylated at guanosine 37 by the Trm5-encoded tRNA (guanine-N1-)-methyltransferase. The Journal of Biological Chemistry. 282: 27744-53. PMID 17652090 DOI: 10.1074/Jbc.M704572200  0.56
2007 Helgadóttir S, Rosas-Sandoval G, Söll D, Graham DE. Biosynthesis of phosphoserine in the Methanococcales Journal of Bacteriology. 189: 575-582. PMID 17071763 DOI: 10.1128/Jb.01269-06  0.56
2007 Lindahl PA, Graham DE. Acetyl-coenzyme A Synthases and Nickel-Containing Carbon Monoxide Dehydrogenases Nickel and Its Surprising Impact in Nature. 2: 357-415. DOI: 10.1002/9780470028131.ch9  0.56
2003 Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proceedings of the National Academy of Sciences of the United States of America. 100: 12984-8. PMID 14566062 DOI: 10.1073/Pnas.1735403100  0.56
2003 Wise EL, Graham DE, White RH, Rayment I. The structural determination of phosphosulfolactate synthase from Methanococcus jannaschii at 1.7-A resolution: an enolase that is not an enolase. The Journal of Biological Chemistry. 278: 45858-63. PMID 12952952 DOI: 10.1074/Jbc.M307486200  0.56
2003 Potters MB, Solow BT, Bischoff KM, Graham DE, Lower BH, Helm R, Kennelly PJ. Phosphoprotein with phosphoglycerate mutase activity from the archaeon Sulfolobus solfataricus. Journal of Bacteriology. 185: 2112-21. PMID 12644480 DOI: 10.1128/Jb.185.7.2112-2121.2003  0.56
2003 Tolbert WD, Graham DE, White RH, Ealick SE. Pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii: crystal structures of the self-cleaved and S53A proenzyme forms. Structure (London, England : 1993). 11: 285-94. PMID 12623016 DOI: 10.1016/S0969-2126(03)00026-1  0.56
2002 Rosas-Sandoval G, Ambrogelly A, Rinehart J, Wei D, Cruz-Vera LR, Graham DE, Stetter KO, Guarneros G, Söll D. Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast. Proceedings of the National Academy of Sciences of the United States of America. 99: 16707-12. PMID 12475929 DOI: 10.1073/Pnas.222659199  0.56
2002 Min B, Pelaschier JT, Graham DE, Tumbula-Hansen D, Söll D. Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation. Proceedings of the National Academy of Sciences of the United States of America. 99: 2678-83. PMID 11880622 DOI: 10.1073/Pnas.012027399  0.56
2001 McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Research. 29: 4699-706. PMID 11713320 DOI: 10.1093/Nar/29.22.4699  0.56
2001 Graham DE, Graupner M, Xu H, White RH. Identification of coenzyme M biosynthetic 2-phosphosulfolactate phosphatase. A member of a new class of Mg(2+)-dependent acid phosphatases. European Journal of Biochemistry / Febs. 268: 5176-88. PMID 11589710 DOI: 10.1046/J.0014-2956.2001.02451.X  0.56
2001 Bonheyo G, Graham D, Shoemaker NB, Salyers AA. Transfer region of a bacteroides conjugative transposon, CTnDOT Plasmid. 45: 41-51. PMID 11319931 DOI: 10.1006/Plas.2000.1495  0.56
2000 Bunjun S, Stathopoulos C, Graham D, Min B, Kitabatake M, Wang AL, Wang CC, Vivarès CP, Weiss LM, Söll D. A dual-specificity aminoacyl-tRNA synthetase in the deep-rooted eukaryote Giardia lamblia Proceedings of the National Academy of Sciences of the United States of America. 97: 12997-13002. PMID 11078517 DOI: 10.1073/Pnas.230444397  0.56
2000 Kim AD, Graham DE, Seeholzer SH, Markham GD. S-adenosylmethionine decarboxylase from the archaeon Methanococcus jannaschii: Identification of a novel family of pyruvoyl enzymes Journal of Bacteriology. 182: 6667-6672. PMID 11073910 DOI: 10.1128/Jb.182.23.6667-6672.2000  0.56
1999 Li T, Graham DE, Stathopoulos C, Haney PJ, Kim HS, Vothknecht U, Kitabatake M, Hong KW, Eggertsson G, Curnow AW, Lin W, Celic I, Whitman W, Söll D. Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis. Febs Letters. 462: 302-6. PMID 10622715 DOI: 10.1016/S0014-5793(99)01550-1  0.56
1998 Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, Huber R, Feldman RA, Short JM, Olsen GJ, Swanson RV. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 392: 353-8. PMID 9537320 DOI: 10.1038/32831  0.56
1997 Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 390: 364-70. PMID 9389475 DOI: 10.1038/37052  0.56
Show low-probability matches.