| Year |
Citation |
Score |
| 2023 |
Kelly JA, Dinman JD. Shiftless Is a Novel Member of the Ribosome Stress Surveillance Machinery That Has Evolved to Play a Role in Innate Immunity and Cancer Surveillance. Viruses. 15. PMID 38140537 DOI: 10.3390/v15122296 |
0.805 |
|
| 2023 |
Rodríguez-García ME, Cotrina-Vinagre FJ, Olson AN, Sánchez-Calvin MT, de Aragón AM, de Las Heras RS, Dinman JD, de Vries BBA, Nabais Sá MJ, Quijada-Fraile P, Martínez-Azorín F. Correction: A novel de novo variant in CASK causes a severe neurodevelopmental disorder that masks the phenotype of a novel de novo variant in EEF2. Journal of Human Genetics. PMID 37237142 DOI: 10.1038/s10038-023-01164-y |
0.771 |
|
| 2023 |
Rodríguez-García ME, Cotrina-Vinagre FJ, Sánchez-Calvin MT, de Aragón AM, de Las Heras RS, Dinman JD, de Vries BBA, Nabais Sá MJ, Quijada-Fraile P, Martínez-Azorín F. A novel de novo variant in CASK causes a severe neurodevelopmental disorder that masks the phenotype of a novel de novo variant in EEF2. Journal of Human Genetics. PMID 37072624 DOI: 10.1038/s10038-023-01150-4 |
0.558 |
|
| 2022 |
Olson AN, Song S, Dinman JD. Deep mutational analysis of elongation factor eEF2 residues implicated in human disease to identify functionally important contacts with the ribosome. The Journal of Biological Chemistry. 102771. PMID 36470424 DOI: 10.1016/j.jbc.2022.102771 |
0.815 |
|
| 2022 |
Rolband L, Beasock D, Wang Y, Shu YG, Dinman JD, Schlick T, Zhou Y, Kieft JS, Chen SJ, Bussi G, Oukhaled A, Gao X, Šulc P, Binzel D, Bhullar AS, et al. Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions. Computational and Structural Biotechnology Journal. 20: 6120-6137. PMID 36420155 DOI: 10.1016/j.csbj.2022.11.007 |
0.575 |
|
| 2022 |
Meydan S, Klepacki D, Karthikeyan S, Margus T, Thomas P, Jones JE, Khan YA, Briggs J, Dinman JD, Vázquez-Laslop N, Mankin AS. Response to: Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding. Molecular Cell. PMID 36115343 DOI: 10.1016/j.molcel.2022.08.025 |
0.799 |
|
| 2022 |
Lehman CW, Smith A, Kelly J, Jacobs JL, Dinman JD, Kehn-Hall K. EGR1 Upregulation during Encephalitic Viral Infections Contributes to Inflammation and Cell Death. Viruses. 14. PMID 35746681 DOI: 10.3390/v14061210 |
0.783 |
|
| 2022 |
Barna M, Karbstein K, Tollervey D, Ruggero D, Brar G, Greer EL, Dinman JD. The promises and pitfalls of specialized ribosomes. Molecular Cell. 82: 2179-2184. PMID 35714581 DOI: 10.1016/j.molcel.2022.05.035 |
0.68 |
|
| 2022 |
Munshi S, Neupane K, Ileperuma SM, Halma MTJ, Kelly JA, Halpern CF, Dinman JD, Loerch S, Woodside MT. Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses. Viruses. 14. PMID 35215770 DOI: 10.3390/v14020177 |
0.805 |
|
| 2021 |
Dahal B, Lehman CW, Akhrymuk I, Bracci NR, Panny L, Barrera MD, Bhalla N, Jacobs JL, Dinman JD, Kehn-Hall K. PERK Is Critical for Alphavirus Nonstructural Protein Translation. Viruses. 13. PMID 34065980 DOI: 10.3390/v13050892 |
0.714 |
|
| 2020 |
Kelly JA, Woodside MT, Dinman JD. Programmed -1 Ribosomal Frameshifting in coronaviruses: A therapeutic target. Virology. 554: 75-82. PMID 33387787 DOI: 10.1016/j.virol.2020.12.010 |
0.799 |
|
| 2020 |
Nabais Sá MJ, Olson AN, Yoon G, Nimmo GAM, Gomez CM, Willemsen MA, Millan F, Schneider A, Pfundt R, de Brouwer APM, Dinman JD, de Vries BBA. De Novo Variants in EEF2 Cause a Neurodevelopmental Disorder with Benign External Hydrocephalus. Human Molecular Genetics. PMID 33355653 DOI: 10.1093/hmg/ddaa270 |
0.792 |
|
| 2020 |
Olson AN, Dinman JD. Two Ribosomes Are Better Than One... Sometimes. Molecular Cell. 79: 541-543. PMID 32822579 DOI: 10.1016/j.molcel.2020.07.022 |
0.802 |
|
| 2020 |
Kelly JA, Olson AN, Neupane K, Munshi S, Emeterio JS, Pollack L, Woodside MT, Dinman JD. Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 32587971 DOI: 10.1101/2020.03.13.991083 |
0.812 |
|
| 2020 |
Kelly JA, Olson AN, Neupane K, Munshi S, San Emeterio J, Pollack L, Woodside MT, Dinman JD. Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2). The Journal of Biological Chemistry. PMID 32571880 DOI: 10.1074/Jbc.Ac120.013449 |
0.814 |
|
| 2019 |
Lezzerini M, Penzo M, O'Donohue MF, Marques Dos Santos Vieira C, Saby M, Elfrink HL, Diets IJ, Hesse AM, Couté Y, Gastou M, Nin-Velez A, Nikkels PGJ, Olson AN, Zonneveld-Huijssoon E, Jongmans MCJ, ... Dinman JD, et al. Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism. Nucleic Acids Research. PMID 31799629 DOI: 10.1093/Nar/Gkz1042 |
0.805 |
|
| 2019 |
Dahal B, Lin SC, Carey BD, Jacobs JL, Dinman JD, van Hoek ML, Adams AA, Kehn-Hall K. EGR1 upregulation following Venezuelan equine encephalitis virus infection is regulated by ERK and PERK pathways contributing to cell death. Virology. 539: 121-128. PMID 31733451 DOI: 10.1016/J.Virol.2019.10.016 |
0.681 |
|
| 2019 |
Sulima SO, Dinman JD. The Expanding Riboverse. Cells. 8. PMID 31590378 DOI: 10.3390/cells8101205 |
0.8 |
|
| 2019 |
Dinman JD. Slippery ribosomes prefer shapeshifting mRNAs. Proceedings of the National Academy of Sciences of the United States of America. PMID 31501316 DOI: 10.1073/pnas.1913074116 |
0.572 |
|
| 2019 |
Dinman JD. Translational Recoding Signals: Expanding the Synthetic Biology Toolbox. The Journal of Biological Chemistry. PMID 30936208 DOI: 10.1074/jbc.REV119.006348 |
0.575 |
|
| 2019 |
Dinman JD. Scaring Ribosomes Shiftless. Biochemistry. PMID 30915840 DOI: 10.1021/acs.biochem.9b00162 |
0.6 |
|
| 2019 |
Haag ES, Dinman JD. Still Searching for Specialized Ribosomes. Developmental Cell. 48: 744-746. PMID 30913404 DOI: 10.1016/J.Devcel.2019.03.005 |
0.514 |
|
| 2018 |
Sulima SO, Kampen KR, Vereecke S, Pepe D, Fancello L, Verbeeck J, Dinman JD, De Keersmaecker K. Ribosomal lesions promote oncogenic mutagenesis. Cancer Research. PMID 30482776 DOI: 10.1158/0008-5472.Can-18-1987 |
0.791 |
|
| 2018 |
Dinman JD. Shapeshifting RNAs guide innate immunity. The Journal of Biological Chemistry. 293: 16125-16126. PMID 30315089 DOI: 10.1074/jbc.H118.005799 |
0.56 |
|
| 2018 |
Kendra JA, Advani VM, Chen B, Briggs JW, Zhu J, Bress HJ, Pathy SM, Dinman JD. Functional and structural characterization of the Chikungunya virus translational recoding signals. The Journal of Biological Chemistry. PMID 30242123 DOI: 10.1074/jbc.RA118.005606 |
0.817 |
|
| 2018 |
Dever TE, Dinman JD, Green R. Translation Elongation and Recoding in Eukaryotes. Cold Spring Harbor Perspectives in Biology. PMID 29610120 DOI: 10.1101/Cshperspect.A032649 |
0.582 |
|
| 2018 |
Chen B, Longhini AP, Nußbaumer F, Kreutz C, Dinman J, Dayie TK. Residue and site-specific labeling of CCR5 RNA pseudoknot reveals internal motions that correlate with microRNA binding. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 29412477 DOI: 10.1002/Chem.201705948 |
0.574 |
|
| 2017 |
Briggs JW, Ren L, Chakrabarti KR, Tsai YC, Weissman AM, Hansen RJ, Gustafson DL, Khan YA, Dinman JD, Khanna C. Activation of the unfolded protein response in sarcoma cells treated with rapamycin or temsirolimus. Plos One. 12: e0185089. PMID 28926611 DOI: 10.1371/journal.pone.0185089 |
0.783 |
|
| 2017 |
Sulima SO, Hofman IJF, De Keersmaecker K, Dinman JD. How Ribosomes Translate Cancer. Cancer Discovery. PMID 28923911 DOI: 10.1158/2159-8290.CD-17-0550 |
0.811 |
|
| 2017 |
Girardi T, Vereecke S, Sulima SO, Khan Y, Fancello L, Briggs JW, Schwab C, de Beeck JO, Verbeeck J, Royaert J, Geerdens E, Vicente C, Bornschein S, Harrison CJ, Meijerink JP, ... ... Dinman JD, et al. The T-cell leukemia associated ribosomal RPL10 R98S mutation enhances JAK-STAT signaling. Leukemia. PMID 28744013 DOI: 10.1038/Leu.2017.225 |
0.796 |
|
| 2017 |
Briggs JW, Dinman JD. Subtractional Heterogeneity: A Crucial Step toward Defining Specialized Ribosomes. Molecular Cell. 67: 3-4. PMID 28686875 DOI: 10.1016/j.molcel.2017.06.022 |
0.794 |
|
| 2017 |
Gulay SP, Bista S, Varshney A, Kirmizialtin S, Sanbonmatsu KY, Dinman JD. Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle. Nucleic Acids Research. PMID 28334755 DOI: 10.1093/Nar/Gkx112 |
0.792 |
|
| 2017 |
Paolini NA, Attwood M, Sondalle SB, Vieira CM, van Adrichem AM, di Summa FM, O'Donohue MF, Gleizes PE, Rachuri S, Briggs JW, Fischer R, Ratcliffe PJ, Wlodarski MW, Houtkooper RH, von Lindern M, ... ... Dinman JD, et al. A Ribosomopathy Reveals Decoding Defective Ribosomes Driving Human Dysmorphism. American Journal of Human Genetics. 100: 506-522. PMID 28257692 DOI: 10.1016/J.Ajhg.2017.01.034 |
0.813 |
|
| 2017 |
Meydan S, Klepacki D, Karthikeyan S, Margus T, Thomas P, Jones JE, Khan Y, Briggs J, Dinman JD, Vázquez-Laslop N, Mankin AS. Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene. Molecular Cell. 65: 207-219. PMID 28107647 DOI: 10.1016/J.Molcel.2016.12.008 |
0.804 |
|
| 2016 |
Kendra JA, de la Fuente C, Brahms A, Woodson C, Bell TM, Chen B, Khan YA, Jacobs JL, Kehn-Hall K, Dinman JD. Ablation of programmed -1 ribosomal frameshifting in Venezuelan equine encephalitis virus results in attenuated neuropathogenicity. Journal of Virology. PMID 27852852 DOI: 10.1128/Jvi.01766-16 |
0.806 |
|
| 2016 |
Moomau C, Musalgaonkar S, Khan YA, Jones JE, Dinman JD. Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis-Acting RNA Elements. The Journal of Biological Chemistry. PMID 27226636 DOI: 10.1074/Jbc.M116.735613 |
0.706 |
|
| 2016 |
Kisly I, Gulay SP, Mäeorg U, Dinman JD, Remme J, Tamm T. The functional role of eL19 and eB12 intersubunit bridge in the eukaryotic ribosome. Journal of Molecular Biology. PMID 27038511 DOI: 10.1016/J.Jmb.2016.03.023 |
0.817 |
|
| 2016 |
Mailliot J, de Loubresse NG, Yusupova G, Meskauskas A, Dinman JD, Yusupov M. Crystal structures of the uL3 mutant ribosome: illustration of the importance of ribosomal proteins for translation efficiency. Journal of Molecular Biology. PMID 26906928 DOI: 10.1016/J.Jmb.2016.02.013 |
0.833 |
|
| 2016 |
Baer A, Lundberg L, Swales D, Waybright N, Pinkham C, Dinman JD, Jacobs JL, Kehn-Hall K. Venezuelan Equine Encephalitis Virus Induces Apoptosis through the Unfolded Protein Response Activation of EGR1. Journal of Virology. PMID 26792742 DOI: 10.1128/Jvi.02827-15 |
0.714 |
|
| 2016 |
Dinman JD. Pathways to Specialized Ribosomes: The Brussels Lecture. Journal of Molecular Biology. PMID 26764228 DOI: 10.1016/j.jmb.2015.12.021 |
0.556 |
|
| 2016 |
Advani VM, Dinman JD. Reprogramming the genetic code: The emerging role of ribosomal frameshifting in regulating cellular gene expression. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 38: 21-6. PMID 26661048 DOI: 10.1002/bies.201500131 |
0.813 |
|
| 2015 |
Bowen AM, Musalgaonkar S, Moomau CA, Gulay SP, Mirvis M, Dinman JD. Ribosomal protein uS19 mutants reveal its role in coordinating ribosome structure and function. Translation (Austin, Tex.). 3: e1117703. PMID 26824029 DOI: 10.1080/21690731.2015.1117703 |
0.813 |
|
| 2015 |
Belew AT, Dinman JD. Cell cycle control (and more) by programmed -1 ribosomal frameshifting: implications for disease and therapeutics. Cell Cycle (Georgetown, Tex.). 14: 172-8. PMID 25584829 DOI: 10.4161/15384101.2014.989123 |
0.789 |
|
| 2015 |
De Keersmaecker K, Sulima SO, Dinman JD. Ribosomopathies and the paradox of cellular hypo- to hyperproliferation. Blood. 125: 1377-82. PMID 25575543 DOI: 10.1182/blood-2014-10-569616 |
0.8 |
|
| 2015 |
Dinman JD. Molecular biology: Entry signals control development. Nature. 517: 24-5. PMID 25409148 DOI: 10.1038/nature14069 |
0.499 |
|
| 2015 |
Kasprzak WK, Dinman JD, Shapiro BA. A Ribosomal Frameshifting Structure in the CCR5 mRNA Leads to Mirna-Stimulated Nonsense-Mediated mRNA Decay Biophysical Journal. 108: 238a. DOI: 10.1016/j.bpj.2014.11.1316 |
0.549 |
|
| 2014 |
Madsen C, Hooper I, Lundberg L, Shafagati N, Johnson A, Senina S, de la Fuente C, Hoover LI, Fredricksen BL, Dinman J, Jacobs JL, Kehn-Hall K. Small molecule inhibitors of Ago2 decrease Venezuelan equine encephalitis virus replication. Antiviral Research. 112: 26-37. PMID 25448087 DOI: 10.1016/J.Antiviral.2014.10.002 |
0.696 |
|
| 2014 |
Dashti A, Schwander P, Langlois R, Fung R, Li W, Hosseinizadeh A, Liao HY, Pallesen J, Sharma G, Stupina VA, Simon AE, Dinman JD, Frank J, Ourmazd A. Trajectories of the ribosome as a Brownian nanomachine. Proceedings of the National Academy of Sciences of the United States of America. 111: 17492-7. PMID 25422471 DOI: 10.1073/Pnas.1419276111 |
0.692 |
|
| 2014 |
Musalgaonkar S, Moomau CA, Dinman JD. Ribosomes in the balance: structural equilibrium ensures translational fidelity and proper gene expression. Nucleic Acids Research. 42: 13384-92. PMID 25389262 DOI: 10.1093/Nar/Gku1020 |
0.634 |
|
| 2014 |
Belew AT, Meskauskas A, Musalgaonkar S, Advani VM, Sulima SO, Kasprzak WK, Shapiro BA, Dinman JD. Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway. Nature. 512: 265-9. PMID 25043019 DOI: 10.1038/Nature13429 |
0.805 |
|
| 2014 |
Sulimaa SO, Patchett S, Advani VM, De Keersmaecker K, Johnson AW, Dinman JD. Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis Proceedings of the National Academy of Sciences of the United States of America. 111: 5640-5645. PMID 24706786 DOI: 10.1073/Pnas.1400247111 |
0.825 |
|
| 2014 |
Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, et al. A new system for naming ribosomal proteins. Current Opinion in Structural Biology. 24: 165-9. PMID 24524803 DOI: 10.1016/J.Sbi.2014.01.002 |
0.709 |
|
| 2014 |
de Messieres M, Chang JC, Belew AT, Meskauskas A, Dinman JD, La Porta A. Single-molecule measurements of the CCR5 mRNA unfolding pathways. Biophysical Journal. 106: 244-52. PMID 24411256 DOI: 10.1016/J.Bpj.2013.09.036 |
0.815 |
|
| 2014 |
Sulima SO, Gülay SP, Anjos M, Patchett S, Meskauskas A, Johnson AW, Dinman JD. Eukaryotic rpL10 drives ribosomal rotation Nucleic Acids Research. 42: 2049-2063. PMID 24214990 DOI: 10.1093/Nar/Gkt1107 |
0.804 |
|
| 2013 |
Advani VM, Belew AT, Dinman JD. Yeast telomere maintenance is globally controlled by programmed ribosomal frameshifting and the nonsense-mediated mRNA decay pathway. Translation (Austin, Tex.). 1: e24418. PMID 24563826 DOI: 10.4161/trla.24418 |
0.828 |
|
| 2013 |
Gao F, Gulay SP, Kasprzak W, Dinman JD, Shapiro BA, Simon AE. The kissing-loop T-shaped structure translational enhancer of Pea enation mosaic virus can bind simultaneously to ribosomes and a 5' proximal hairpin. Journal of Virology. 87: 11987-2002. PMID 23986599 DOI: 10.1128/Jvi.02005-13 |
0.821 |
|
| 2013 |
Plant EP, Sims AC, Baric RS, Dinman JD, Taylor DR. Altering SARS coronavirus frameshift efficiency affects genomic and subgenomic RNA production. Viruses. 5: 279-94. PMID 23334702 DOI: 10.3390/V5010279 |
0.804 |
|
| 2013 |
Ishimaru D, Plant EP, Sims AC, Yount BL, Roth BM, Eldho NV, Pérez-Alvarado GC, Armbruster DW, Baric RS, Dinman JD, Taylor DR, Hennig M. RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus. Nucleic Acids Research. 41: 2594-608. PMID 23275571 DOI: 10.1093/Nar/Gks1361 |
0.815 |
|
| 2012 |
Jenner L, Melnikov S, Garreau de Loubresse N, Ben-Shem A, Iskakova M, Urzhumtsev A, Meskauskas A, Dinman J, Yusupova G, Yusupov M. Crystal structure of the 80S yeast ribosome. Current Opinion in Structural Biology. 22: 759-67. PMID 22884264 DOI: 10.1016/J.Sbi.2012.07.013 |
0.793 |
|
| 2012 |
Dinman JD. Mechanisms and implications of programmed translational frameshifting. Wiley Interdisciplinary Reviews. Rna. 3: 661-73. PMID 22715123 DOI: 10.1002/wrna.1126 |
0.661 |
|
| 2012 |
Dinman JD. Control of gene expression by translational recoding. Advances in Protein Chemistry and Structural Biology. 86: 129-49. PMID 22243583 DOI: 10.1016/B978-0-12-386497-0.00004-9 |
0.598 |
|
| 2012 |
Sharma G, Stupina V, Pallesen J, Shapiro B, Simon A, Dinman J, Frank J. Cryo-Electron Microscopy (Cryo-EM) Structure of a Cap-Independent Translational Enhancer of the Turnip Crinkle Virus (TCV) Bound to the Eukaryotic Ribosome Biophysical Journal. 102: 393a. DOI: 10.1016/J.Bpj.2011.11.2147 |
0.748 |
|
| 2012 |
de Messieres M, Chang J, Belew AT, Meskauskas A, Dinman JD, La Porta A. Single-Molecule Optical Trap Study of Human CCR5 mRNA Structure Biophysical Journal. 102: 384a. DOI: 10.1016/J.Bpj.2011.11.2102 |
0.813 |
|
| 2011 |
Jack K, Bellodi C, Landry DM, Niederer RO, Meskauskas A, Musalgaonkar S, Kopmar N, Krasnykh O, Dean AM, Thompson SR, Ruggero D, Dinman JD. rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Molecular Cell. 44: 660-6. PMID 22099312 DOI: 10.1016/J.Molcel.2011.09.017 |
0.811 |
|
| 2011 |
Meskauskas A, Leshin JA, Dinman JD. Chromatographic purification of highly active yeast ribosomes. Journal of Visualized Experiments : Jove. PMID 22042245 DOI: 10.3791/3214 |
0.798 |
|
| 2011 |
Guo R, Meskauskas A, Dinman JD, Simon AE. Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus. Virology. 419: 10-6. PMID 21862095 DOI: 10.1016/J.Virol.2011.07.019 |
0.822 |
|
| 2011 |
Rhodin MH, Dinman JD. An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome. Plos One. 6: e20048. PMID 21625514 DOI: 10.1371/journal.pone.0020048 |
0.812 |
|
| 2011 |
Rakauskaite R, Liao PY, Rhodin MH, Lee K, Dinman JD. A rapid, inexpensive yeast-based dual-fluorescence assay of programmed--1 ribosomal frameshifting for high-throughput screening. Nucleic Acids Research. 39: e97. PMID 21602263 DOI: 10.1093/Nar/Gkr382 |
0.812 |
|
| 2011 |
Rhodin MH, Rakauskaitė R, Dinman JD. The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity. Molecular Genetics and Genomics : Mgg. 285: 505-16. PMID 21519857 DOI: 10.1007/s00438-011-0623-2 |
0.815 |
|
| 2011 |
Leshin JA, Heselpoth R, Belew AT, Dinman JD. High throughput structural analysis of yeast ribosomes using hSHAPE Rna Biology. 8: 478-487. PMID 21508682 DOI: 10.4161/Rna.8.3.14453 |
0.803 |
|
| 2011 |
Rakauskaite R, Dinman JD. Mutations of highly conserved bases in the peptidyltransferase center induce compensatory rearrangements in yeast ribosomes. Rna (New York, N.Y.). 17: 855-64. PMID 21441349 DOI: 10.1261/Rna.2593211 |
0.842 |
|
| 2011 |
Stupina VA, Yuan X, Meskauskas A, Dinman JD, Simon AE. Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus. Journal of Virology. 85: 4638-53. PMID 21389125 DOI: 10.1128/Jvi.00005-11 |
0.835 |
|
| 2011 |
Belew AT, Advani VM, Dinman JD. Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast. Nucleic Acids Research. 39: 2799-808. PMID 21109528 DOI: 10.1093/Nar/Gkq1220 |
0.81 |
|
| 2011 |
Liao PY, Choi YS, Dinman JD, Lee KH. The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting. Nucleic Acids Research. 39: 300-12. PMID 20823091 DOI: 10.1093/Nar/Gkq761 |
0.705 |
|
| 2010 |
Rhodin MH, Dinman JD. A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding. Nucleic Acids Research. 38: 8377-89. PMID 20705654 DOI: 10.1093/nar/gkq711 |
0.811 |
|
| 2010 |
Meskauskas A, Dinman JD. A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site. Nucleic Acids Research. 38: 7800-13. PMID 20660012 DOI: 10.1093/Nar/Gkq641 |
0.805 |
|
| 2010 |
Leshin JA, Rakauskaitė R, Dinman JD, Meskauskas A. Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method. Rna Biology. 7: 354-60. PMID 20404492 DOI: 10.4161/Rna.7.3.11648 |
0.796 |
|
| 2010 |
Plant EP, Rakauskaite R, Taylor DR, Dinman JD. Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins. Journal of Virology. 84: 4330-40. PMID 20164235 DOI: 10.1128/Jvi.02480-09 |
0.84 |
|
| 2010 |
Dinman JD. Programmed-1 ribosomal frameshifting in SARS coronavirus Molecular Biology of the Sars-Coronavirus. 63-72. DOI: 10.1007/978-3-642-03683-5_5 |
0.644 |
|
| 2009 |
Dinman JD, Kinzy TG. Expanding the ribosomal universe. Structure (London, England : 1993). 17: 1547-8. PMID 20004156 DOI: 10.1016/J.Str.2009.11.003 |
0.719 |
|
| 2009 |
Dinman JD. The eukaryotic ribosome: current status and challenges. The Journal of Biological Chemistry. 284: 11761-5. PMID 19117941 DOI: 10.1074/jbc.R800074200 |
0.599 |
|
| 2008 |
Meskauskas A, Dinman JD. Ribosomal protein L3 functions as a 'rocker switch' to aid in coordinating of large subunit-associated functions in eukaryotes and Archaea. Nucleic Acids Research. 36: 6175-86. PMID 18832371 DOI: 10.1093/Nar/Gkn642 |
0.803 |
|
| 2008 |
Stupina VA, Meskauskas A, McCormack JC, Yingling YG, Shapiro BA, Dinman JD, Simon AE. The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. Rna (New York, N.Y.). 14: 2379-93. PMID 18824512 DOI: 10.1261/Rna.1227808 |
0.833 |
|
| 2008 |
Petrov AN, Meskauskas A, Roshwalb SC, Dinman JD. Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Research. 36: 6187-98. PMID 18824477 DOI: 10.1093/Nar/Gkn643 |
0.832 |
|
| 2008 |
Belew AT, Hepler NL, Jacobs JL, Dinman JD. PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals. Bmc Genomics. 9: 339. PMID 18637175 DOI: 10.1186/1471-2164-9-339 |
0.806 |
|
| 2008 |
Plant EP, Dinman JD. The role of programmed-1 ribosomal frameshifting in coronavirus propagation. Frontiers in Bioscience : a Journal and Virtual Library. 13: 4873-81. PMID 18508552 DOI: 10.2741/3046 |
0.785 |
|
| 2008 |
Liao PY, Gupta P, Petrov AN, Dinman JD, Lee KH. A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting. Nucleic Acids Research. 36: 2619-29. PMID 18344525 DOI: 10.1093/Nar/Gkn100 |
0.742 |
|
| 2008 |
Meskauskas A, Russ JR, Dinman JD. Structure/function analysis of yeast ribosomal protein L2. Nucleic Acids Research. 36: 1826-35. PMID 18263608 DOI: 10.1093/Nar/Gkn034 |
0.809 |
|
| 2008 |
Rakauskaite R, Dinman JD. rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance. Nucleic Acids Research. 36: 1497-507. PMID 18203742 DOI: 10.1093/Nar/Gkm1179 |
0.82 |
|
| 2008 |
Swatkoski S, Gutierrez P, Wynne C, Petrov A, Dinman JD, Edwards N, Fenselau C. Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications. Journal of Proteome Research. 7: 579-86. PMID 18189344 DOI: 10.1021/Pr070502C |
0.704 |
|
| 2007 |
Chaudhuri S, Vyas K, Kapasi P, Komar AA, Dinman JD, Barik S, Mazumder B. Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation. Rna (New York, N.Y.). 13: 2224-37. PMID 17921318 DOI: 10.1261/Rna.694007 |
0.728 |
|
| 2007 |
Swatkoski S, Gutierrez P, Ginter J, Petrov A, Dinman JD, Edwards N, Fenselau C. Integration of residue-specific acid cleavage into proteomic workflows. Journal of Proteome Research. 6: 4525-7. PMID 17902642 DOI: 10.1021/Pr0704682 |
0.698 |
|
| 2007 |
Plant EP, Nguyen P, Russ JR, Pittman YR, Nguyen T, Quesinberry JT, Kinzy TG, Dinman JD. Differentiating between near- and non-cognate codons in Saccharomyces cerevisiae. Plos One. 2: e517. PMID 17565370 DOI: 10.1371/Journal.Pone.0000517 |
0.819 |
|
| 2007 |
Meskauskas A, Dinman JD. Ribosomal protein L3: gatekeeper to the A site. Molecular Cell. 25: 877-88. PMID 17386264 DOI: 10.1016/J.Molcel.2007.02.015 |
0.791 |
|
| 2007 |
Baxter-Roshek JL, Petrov AN, Dinman JD. Optimization of ribosome structure and function by rRNA base modification. Plos One. 2: e174. PMID 17245450 DOI: 10.1371/Journal.Pone.0000174 |
0.824 |
|
| 2007 |
Jacobs JL, Belew AT, Rakauskaite R, Dinman JD. Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae. Nucleic Acids Research. 35: 165-74. PMID 17158156 DOI: 10.1093/Nar/Gkl1033 |
0.808 |
|
| 2006 |
Dinman JD. Effect of 3`-Azido-3`-Deoxythymidine (AZT) on Telomerase Activity and Proliferation of HO-8910 Cell Line of Ovarian Cancer. International Journal of Biomedical Science : Ijbs. 2: 41. PMID 23674965 |
0.476 |
|
| 2006 |
Dinman JD. Programmed Ribosomal Frameshifting Goes Beyond Viruses: Organisms from all three kingdoms use frameshifting to regulate gene expression, perhaps signaling a paradigm shift. Microbe (Washington, D.C.). 1: 521-527. PMID 17541450 DOI: 10.1128/microbe.1.521.1 |
0.564 |
|
| 2006 |
Rakauskaite R, Dinman JD. An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome. Molecular and Cellular Biology. 26: 8992-9002. PMID 17000775 DOI: 10.1128/Mcb.01311-06 |
0.821 |
|
| 2006 |
Song H, Baxter-Roshek JL, Dinman JD, Vakharia VN. Efficient expression of the 15-kDa form of infectious pancreatic necrosis virus VP5 by suppression of a UGA codon. Virus Research. 122: 61-8. PMID 16891025 DOI: 10.1016/J.Virusres.2006.06.012 |
0.812 |
|
| 2006 |
Muldoon-Jacobs KL, Dinman JD. Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting. Eukaryotic Cell. 5: 762-70. PMID 16607023 DOI: 10.1128/EC.5.4.762-770.2006 |
0.645 |
|
| 2006 |
Plant EP, Dinman JD. Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems. Rna (New York, N.Y.). 12: 666-73. PMID 16497657 DOI: 10.1261/Rna.2225206 |
0.774 |
|
| 2005 |
Dontsova OA, Dinman JD. 5S rRNA: Structure and Function from Head to Toe. International Journal of Biomedical Science : Ijbs. 1: 1-7. PMID 23674948 |
0.704 |
|
| 2005 |
Dinman JD. 5S rRNA: Structure and Function from Head to Toe. International Journal of Biomedical Science : Ijbs. 1: 2-7. PMID 18074004 |
0.566 |
|
| 2005 |
Meskauskas A, Petrov AN, Dinman JD. Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis. Molecular and Cellular Biology. 25: 10863-74. PMID 16314511 DOI: 10.1128/Mcb.25.24.10863-10874.2005 |
0.846 |
|
| 2005 |
Kiparisov S, Petrov A, Meskauskas A, Sergiev PV, Dontsova OA, Dinman JD. Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Molecular Genetics and Genomics : Mgg. 274: 235-47. PMID 16047201 DOI: 10.1007/S00438-005-0020-9 |
0.808 |
|
| 2005 |
Plant EP, Pérez-Alvarado GC, Jacobs JL, Mukhopadhyay B, Hennig M, Dinman JD. A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal. Plos Biology. 3: e172. PMID 15884978 DOI: 10.1371/Journal.Pbio.0030172 |
0.826 |
|
| 2005 |
Plant EP, Dinman JD. Torsional restraint: a new twist on frameshifting pseudoknots. Nucleic Acids Research. 33: 1825-33. PMID 15800212 DOI: 10.1093/Nar/Gki329 |
0.791 |
|
| 2004 |
Petrov A, Meskauskas A, Dinman JD. Ribosomal protein L3: influence on ribosome structure and function. Rna Biology. 1: 59-65. PMID 17194937 DOI: 10.4161/Rna.1.1.957 |
0.834 |
|
| 2004 |
Jacobs JL, Dinman JD. Systematic analysis of bicistronic reporter assay data. Nucleic Acids Research. 32: e160. PMID 15561995 DOI: 10.1093/Nar/Gnh157 |
0.677 |
|
| 2004 |
Harger JW, Dinman JD. Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough. Rna (New York, N.Y.). 10: 1721-9. PMID 15388879 DOI: 10.1261/rna.7120504 |
0.839 |
|
| 2004 |
Plant EP, Wang P, Jacobs JL, Dinman JD. A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element. Nucleic Acids Research. 32: 784-90. PMID 14762205 DOI: 10.1093/Nar/Gkh256 |
0.826 |
|
| 2003 |
Harger JW, Dinman JD. An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. Rna (New York, N.Y.). 9: 1019-24. PMID 12869712 DOI: 10.1261/rna.5930803 |
0.808 |
|
| 2003 |
Meskauskas A, Harger JW, Jacobs KL, Dinman JD. Decreased peptidyltransferase activity correlates with increased programmed -1 ribosomal frameshifting and viral maintenance defects in the yeast Saccharomyces cerevisiae. Rna (New York, N.Y.). 9: 982-92. PMID 12869709 DOI: 10.1261/Rna.2165803 |
0.829 |
|
| 2003 |
Meskauskas A, Baxter JL, Carr EA, Yasenchak J, Gallagher JE, Baserga SJ, Dinman JD. Delayed rRNA processing results in significant ribosome biogenesis and functional defects. Molecular and Cellular Biology. 23: 1602-13. PMID 12588980 DOI: 10.1128/Mcb.23.5.1602-1613.2003 |
0.83 |
|
| 2003 |
Plant EP, Jacobs KL, Harger JW, Meskauskas A, Jacobs JL, Baxter JL, Petrov AN, Dinman JD. The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. Rna (New York, N.Y.). 9: 168-74. PMID 12554858 DOI: 10.1261/Rna.2132503 |
0.809 |
|
| 2002 |
Harger JW, Meskauskas A, Dinman JD. An "integrated model" of programmed ribosomal frameshifting. Trends in Biochemical Sciences. 27: 448-54. PMID 12217519 DOI: 10.1016/S0968-0004(02)02149-7 |
0.81 |
|
| 2002 |
Goss Kinzy T, Harger JW, Carr-Schmid A, Kwon J, Shastry M, Justice M, Dinman JD. New targets for antivirals: the ribosomal A-site and the factors that interact with it. Virology. 300: 60-70. PMID 12202206 DOI: 10.1006/Viro.2002.1567 |
0.818 |
|
| 2002 |
Dinman JD, Richter S, Plant EP, Taylor RC, Hammell AB, Rana TM. The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure. Proceedings of the National Academy of Sciences of the United States of America. 99: 5331-6. PMID 11959986 DOI: 10.1073/Pnas.082102199 |
0.806 |
|
| 2001 |
Smith MW, Meskauskas A, Wang P, Sergiev PV, Dinman JD. Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae Molecular and Cellular Biology. 21: 8264-8275. PMID 11713264 DOI: 10.1128/Mcb.21.24.8264-8275.2001 |
0.795 |
|
| 2001 |
Meskauskas A, Dinman JD. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae Rna. 7: 1084-1096. PMID 11497428 DOI: 10.1017/S1355838201001480 |
0.819 |
|
| 2001 |
Harger JW, Meskauskas A, Nielsen J, Justice MC, Dinman JD. Ty1 retrotransposition and programmed +1 ribosomal frameshifting require the integrity of the protein synthetic translocation step Virology. 286: 216-224. PMID 11448174 DOI: 10.1006/Viro.2001.0997 |
0.831 |
|
| 2001 |
Hudak KA, Hammell AB, Yasenchak J, Tumer NE, Dinman JD. A C-terminal deletion mutant of pokeweed antiviral protein inhibits programmed +1 ribosomal frameshifting and Ty1 retrotransposition without depurinating the sarcin/ricin loop of rRNA Virology. 279: 292-301. PMID 11145910 DOI: 10.1006/Viro.2000.0647 |
0.821 |
|
| 2001 |
Dinman J, Ruiz-Echevarria M, Wang W, Peltz S. The case for the involvement of the Upf3p in programmed -1 ribosomal frameshifting. Rna (New York, N.Y.). 6: 1685-6. PMID 11142366 DOI: 10.1017/S1355838200001886 |
0.712 |
|
| 2000 |
Liermann RT, Dinman JD, Sylvers LA, Jackson JC. Improved purification of the double-stranded RNA from killer strains of yeast. Biotechniques. 28: 64-5. PMID 10649772 |
0.542 |
|
| 2000 |
Lopinski JD, Dinman JD, Bruenn JA. Kinetics of ribosomal pausing during programmed -1 translational frameshifting Molecular and Cellular Biology. 20: 1095-1103. PMID 10648594 DOI: 10.1128/MCB.20.4.1095-1103.2000 |
0.63 |
|
| 1999 |
Cui Y, González CI, Kinzy TG, Dinman JD, Peltz SW. Mutations in the MOF2/SUI1 gene affect both translation and nonsense- mediated mRNA decay Rna. 5: 794-804. PMID 10376878 DOI: 10.1017/S1355838299982055 |
0.83 |
|
| 1999 |
Sheikh MS, Fernandez-Salas E, Yu M, Hussain A, Dinman JD, Peltz SW, Huang Y, Fornace AJ. Cloning and characterization of a human genotoxic and endoplasmic reticulum stress-inducible cDNA that encodes translation initiation factor 1(eIF1(A121/SUI1)) Journal of Biological Chemistry. 274: 16487-16493. PMID 10347211 DOI: 10.1074/Jbc.274.23.16487 |
0.742 |
|
| 1999 |
Hammell AB, Taylor RC, Peltz SW, Dinman JD. Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases. Genome Research. 9: 417-27. PMID 10330121 DOI: 10.1101/Gr.9.5.417 |
0.809 |
|
| 1999 |
Hudak KA, Dinman JD, Tumer NE. Pokeweed antiviral protein accesses ribosomes by binding to L3 Journal of Biological Chemistry. 274: 3859-3864. PMID 9920941 DOI: 10.1074/Jbc.274.6.3859 |
0.742 |
|
| 1999 |
Peltz SW, Hammell AB, Cui Y, Yasenchak J, Puljanowski L, Dinman JD. Ribosomal protein L3 mutants alter translational fidelity and promote rapid loss of the yeast killer virus Molecular and Cellular Biology. 19: 384-391. PMID 9858562 DOI: 10.1128/Mcb.19.1.384 |
0.832 |
|
| 1998 |
Ruiz-Echevarría MJ, Yasenchak JM, Han X, Dinman JD, Peltz SW. The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation. Proceedings of the National Academy of Sciences of the United States of America. 95: 8721-6. PMID 9671745 DOI: 10.1073/Pnas.95.15.8721 |
0.77 |
|
| 1998 |
Dinman JD, Ruiz-Echevarria MJ, Peltz SW. Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents. Trends in Biotechnology. 16: 190-6. PMID 9586242 DOI: 10.1016/S0167-7799(97)01167-0 |
0.722 |
|
| 1998 |
Cui Y, Dinman JD, Kinzy TG, Peltz SW. The Mof2/Sui1 protein is a general monitor of translational accuracy Molecular and Cellular Biology. 18: 1506-1516. PMID 9488467 DOI: 10.1128/Mcb.18.3.1506 |
0.834 |
|
| 1998 |
Tumer NE, Parikh BA, Li P, Dinman JD. The pokeweed antiviral protein specifically inhibits Ty1-directed +1 ribosomal frameshifting and retrotransposition in Saccharomyces cerevisiae. Journal of Virology. 72: 1036-42. PMID 9444997 DOI: 10.1128/Jvi.72.2.1036-1042.1998 |
0.767 |
|
| 1997 |
Dinman JD, Ruiz-Echevarria MJ, Czaplinski K, Peltz SW. Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems. Proceedings of the National Academy of Sciences of the United States of America. 94: 6606-11. PMID 9192612 DOI: 10.1073/Pnas.94.13.6606 |
0.75 |
|
| 1996 |
Cui Y, Dinman JD, Peltz SW. mof4-1 is an allele of the UPF1/IFS2 gene which affects both mRNA turnover and -1 ribosomal frameshifting efficiency Embo Journal. 15: 5726-5736. PMID 8896465 DOI: 10.1002/J.1460-2075.1996.Tb00956.X |
0.724 |
|
| 1995 |
Dinman JD. Ribosomal frameshifting in yeast viruses Yeast. 11: 1115-1127. PMID 8619310 DOI: 10.1002/yea.320111202 |
0.638 |
|
| 1995 |
Dinman JD, Wickner RB. 5 S rRNA is involved in fidelity of translational reading frame Genetics. 141: 95-105. PMID 8536994 |
0.703 |
|
| 1995 |
Triteeraprapab S, Richie TL, Tuan RS, Shepley KJ, Dinman JD, Neubert TA, Scott AL. Molecular cloning of a gene expressed during early embryonic development in Onchocerca volvulus Molecular and Biochemical Parasitology. 69: 161-171. PMID 7770081 DOI: 10.1016/0166-6851(94)00187-R |
0.722 |
|
| 1994 |
Balasundaram D, Dinman JD, Wickner RB, Tabor CW, Tabor H. Spermidine deficiency increases +1 ribosomal frameshifting efficiency and inhibits Ty1 retrotransposition in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 91: 172-6. PMID 8278359 DOI: 10.1073/Pnas.91.1.172 |
0.794 |
|
| 1994 |
Balasundaram D, Dinman JD, Tabor CW, Tabor H. SPE1 and SPE2: two essential genes in the biosynthesis of polyamines that modulate +1 ribosomal frameshifting in Saccharomyces cerevisiae. Journal of Bacteriology. 176: 7126-8. PMID 7961484 DOI: 10.1128/Jb.176.22.7126-7128.1994 |
0.699 |
|
| 1994 |
Vermut M, Widner WR, Dinman JD, Wickner RB. Sequence of MKT1, needed for propagation of M2 satellite dsRNA of the L-A virus of Saccharomyces cerevisiae Yeast. 10: 1477-1479. PMID 7532890 DOI: 10.1002/Yea.320101111 |
0.685 |
|
| 1993 |
Tercero JC, Dinman JD, Wickner RB. Yeast MAK3 N-acetyltransferase recognizes the N-terminal four amino acids of the major coat protein (gag) of the L-A double-stranded RNA virus Journal of Bacteriology. 175: 3192-3194. PMID 8491733 DOI: 10.1128/Jb.175.10.3192-3194.1993 |
0.688 |
|
| 1992 |
Dinman JD, Wickner RB. Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation Journal of Virology. 66: 3669-3676. PMID 1583726 DOI: 10.1128/Jvi.66.6.3669-3676.1992 |
0.728 |
|
| 1991 |
Dinman JD, Icho T, Wickner RB. A -1 ribosomal frameshift in a double-stranded RNA virus of yeast forms a gag-pol fusion protein Proceedings of the National Academy of Sciences of the United States of America. 88: 174-178. PMID 1986362 DOI: 10.1073/Pnas.88.1.174 |
0.722 |
|
| 1990 |
Dinman JD, Scott AL. Onchocerca volvulus: Molecular cloning, primary structure, and expression of a microfilarial surface-associated antigen Experimental Parasitology. 71: 176-188. PMID 1695577 DOI: 10.1016/0014-4894(90)90020-D |
0.66 |
|
| 1989 |
Scott AL, Dinman J, Sussman DJ, Yenbutr P, Ward S. Major sperm protein genes from Onchocerca volvulus Molecular and Biochemical Parasitology. 36: 119-126. PMID 2770787 DOI: 10.1016/0166-6851(89)90184-9 |
0.695 |
|
| 1989 |
Scott AL, Dinman J, Sussman DJ, Ward S. Major sperm protein and actin genes in free-living and parasitic nematodes Parasitology. 98: 471-478. PMID 2570394 DOI: 10.1017/S0031182000061564 |
0.679 |
|
| 1987 |
Huang PC, Morris S, Dinman J, Pine R, Smith B. Role of metallothionein in detoxification and tolerance to transition metals. Experientia. Supplementum. 52: 439-46. PMID 2959533 DOI: 10.1007/978-3-0348-6784-9_43 |
0.53 |
|
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