| Year |
Citation |
Score |
| 2020 |
Sisu C, Muir P, Frankish A, Fiddes I, Diekhans M, Thybert D, Odom DT, Flicek P, Keane TM, Hubbard T, Harrow J, Gerstein M. Transcriptional activity and strain-specific history of mouse pseudogenes. Nature Communications. 11: 3695. PMID 32728065 DOI: 10.1038/S41467-020-17157-W |
0.31 |
|
| 2020 |
Aitken SJ, Anderson CJ, Connor F, Pich O, Sundaram V, Feig C, Rayner TF, Lukk M, Aitken S, Luft J, Kentepozidou E, Arnedo-Pac C, Beentjes SV, Davies SE, Drews RM, ... ... Odom DT, et al. Pervasive lesion segregation shapes cancer genome evolution. Nature. PMID 32581361 DOI: 10.1038/S41586-020-2435-1 |
0.361 |
|
| 2020 |
Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V, Bakal C, Marioni JC, Odom DT, Gergely F. A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division. Nature Communications. 11: 1851. PMID 32296040 DOI: 10.1038/S41467-020-14978-7 |
0.326 |
|
| 2020 |
Karagianni P, Moulos P, Schmidt D, Odom DT, Talianidis I. Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation. Cell Reports. 30: 1319-1328.e6. PMID 32023452 DOI: 10.1016/J.Celrep.2020.01.006 |
0.378 |
|
| 2020 |
Kentepozidou E, Aitken SJ, Feig C, Stefflova K, Ibarra-Soria X, Odom DT, Roller M, Flicek P. Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains. Genome Biology. 21: 5. PMID 31910870 DOI: 10.1186/S13059-019-1894-X |
0.318 |
|
| 2019 |
Yang M, Vesterlund M, Siavelis I, Moura-Castro LH, Castor A, Fioretos T, Jafari R, Lilljebjörn H, Odom DT, Olsson L, Ravi N, Woodward EL, Harewood L, Lehtiö J, Paulsson K. Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia. Nature Communications. 10: 1519. PMID 30944321 DOI: 10.1038/S41467-019-09469-3 |
0.35 |
|
| 2019 |
Ernst C, Eling N, Martinez-Jimenez CP, Marioni JC, Odom DT. Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis. Nature Communications. 10: 1251. PMID 30890697 DOI: 10.1038/S41467-019-09182-1 |
0.341 |
|
| 2019 |
Jacquin AL, Odom DT, Lukk M. Crisflash: Open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation. Bioinformatics (Oxford, England). PMID 30649181 DOI: 10.1093/Bioinformatics/Btz019 |
0.32 |
|
| 2018 |
Kolmogorov M, Armstrong J, Raney BJ, Streeter I, Dunn M, Yang F, Odom D, Flicek P, Keane TM, Thybert D, Paten B, Pham S. Chromosome assembly of large and complex genomes using multiple references. Genome Research. PMID 30341161 DOI: 10.1101/Gr.236273.118 |
0.31 |
|
| 2018 |
Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, ... ... Odom DT, et al. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nature Genetics. PMID 30275530 DOI: 10.1038/S41588-018-0223-8 |
0.33 |
|
| 2018 |
Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, ... ... Odom DT, et al. Integrative detection and analysis of structural variation in cancer genomes. Nature Genetics. PMID 30202056 DOI: 10.1038/S41588-018-0195-8 |
0.352 |
|
| 2018 |
Aitken SJ, Ibarra-Soria X, Kentepozidou E, Flicek P, Feig C, Marioni JC, Odom DT. CTCF maintains regulatory homeostasis of cancer pathways. Genome Biology. 19: 106. PMID 30086769 DOI: 10.1186/S13059-018-1484-3 |
0.401 |
|
| 2018 |
Stojic L, Lun ATL, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC, Gergely F, Odom DT. Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis. Nucleic Acids Research. PMID 29860520 DOI: 10.1093/Nar/Gky437 |
0.322 |
|
| 2018 |
Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, ... ... Odom DT, et al. Repeat associated mechanisms of genome evolution and function revealed by theandgenomes. Genome Research. PMID 29563166 DOI: 10.1101/Gr.234096.117 |
0.386 |
|
| 2018 |
Lowe R, Barton C, Jenkins CA, Ernst C, Forman O, Fernandez-Twinn DS, Bock C, Rossiter SJ, Faulkes CG, Ozanne SE, Walter L, Odom DT, Mellersh C, Rakyan VK. Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species. Genome Biology. 19: 22. PMID 29452591 DOI: 10.1186/S13059-018-1397-1 |
0.348 |
|
| 2018 |
Berthelot C, Villar D, Horvath JE, Odom DT, Flicek P. Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression. Nature Ecology & Evolution. 2: 152-163. PMID 29180706 DOI: 10.1038/S41559-017-0377-2 |
0.348 |
|
| 2017 |
Ernst C, Odom DT, Kutter C. The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity. Nature Communications. 8: 1411. PMID 29127279 DOI: 10.1038/S41467-017-01049-7 |
0.355 |
|
| 2017 |
Wong ES, Schmitt BM, Kazachenka A, Thybert D, Redmond A, Connor F, Rayner TF, Feig C, Ferguson-Smith AC, Marioni JC, Odom DT, Flicek P. Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution. Nature Communications. 8: 1092. PMID 29061983 DOI: 10.1038/S41467-017-01037-X |
0.378 |
|
| 2017 |
Thierion E, Odom DT. Charting the transcriptional regulatory changes in mouse liver during fasting. Hepatology (Baltimore, Md.). PMID 28833286 DOI: 10.1002/Hep.29474 |
0.39 |
|
| 2016 |
Ernst C, Pike J, Aitken SJ, Long HK, Eling N, Stojic L, Ward MC, Connor F, Rayner TF, Lukk M, Klose RJ, Kutter C, Odom DT. Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis. Elife. 5. PMID 27855777 DOI: 10.7554/Elife.20235 |
0.353 |
|
| 2016 |
Morgan AP, Holt JM, McMullan RC, Bell TA, Clayshulte AM, Didion JP, Yadgary L, Thybert D, Odom DT, Flicek P, McMillan L, Pardo-Manuel de Villena F. The Evolutionary Fates of a Large Segmental Duplication in Mouse. Genetics. PMID 27371833 DOI: 10.1534/Genetics.116.191007 |
0.309 |
|
| 2016 |
Rensch T, Villar D, Horvath J, Odom DT, Flicek P. Mitochondrial heteroplasmy in vertebrates using ChIP-sequencing data. Genome Biology. 17: 139. PMID 27349964 DOI: 10.1186/S13059-016-0996-Y |
0.333 |
|
| 2016 |
Rudolph KL, Schmitt BM, Villar D, White RJ, Marioni JC, Kutter C, Odom DT. Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States. Plos Genetics. 12: e1006024. PMID 27166679 DOI: 10.1371/Journal.Pgen.1006024 |
0.346 |
|
| 2016 |
Long HK, King HW, Patient RK, Odom DT, Klose RJ. Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved. Nucleic Acids Research. PMID 27084945 DOI: 10.1093/Nar/Gkw258 |
0.485 |
|
| 2016 |
Odom DT. Comparative Genomics: One for all. Elife. 5. PMID 26880550 DOI: 10.7554/Elife.14150 |
0.337 |
|
| 2016 |
Stojic L, Niemczyk M, Orjalo A, Ito Y, Ruijter AE, Uribe-Lewis S, Joseph N, Weston S, Menon S, Odom DT, Rinn J, Gergely F, Murrell A. Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions. Nature Communications. 7: 10406. PMID 26832224 DOI: 10.1038/Ncomms10406 |
0.323 |
|
| 2016 |
Martinez-Jimenez CP, Odom DT. The mechanisms shaping the single-cell transcriptional landscape. Current Opinion in Genetics & Development. 37: 27-35. PMID 26803530 DOI: 10.1016/J.Gde.2015.11.004 |
0.345 |
|
| 2015 |
Villar D, Odom DT. When the Snake Lost Its Limbs, What Did the Mouse and Lizard Say? Developmental Cell. 35: 3-4. PMID 26460939 DOI: 10.1016/J.Devcel.2015.09.022 |
0.351 |
|
| 2015 |
Leigh-Brown S, Goncalves A, Thybert D, Stefflova K, Watt S, Flicek P, Brazma A, Marioni JC, Odom DT. Regulatory Divergence of Transcript Isoforms in a Mammalian Model System. Plos One. 10: e0137367. PMID 26339903 DOI: 10.1371/Journal.Pone.0137367 |
0.354 |
|
| 2015 |
Vietri Rudan M, Barrington C, Henderson S, Ernst C, Odom DT, Tanay A, Hadjur S. Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture. Cell Reports. 10: 1297-309. PMID 25732821 DOI: 10.1016/J.Celrep.2015.02.004 |
0.357 |
|
| 2015 |
Villar D, Berthelot C, Aldridge S, Rayner TF, Lukk M, Pignatelli M, Park TJ, Deaville R, Erichsen JT, Jasinska AJ, Turner JM, Bertelsen MF, Murchison EP, Flicek P, Odom DT. Enhancer evolution across 20 mammalian species. Cell. 160: 554-66. PMID 25635462 DOI: 10.1016/J.Cell.2015.01.006 |
0.383 |
|
| 2015 |
Wong ES, Thybert D, Schmitt BM, Stefflova K, Odom DT, Flicek P. Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals. Genome Research. 25: 167-78. PMID 25394363 DOI: 10.1101/Gr.177840.114 |
0.393 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Odom DT, et al. Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. Elife. 3: e02626. PMID 25279814 DOI: 10.7554/Elife.02626 |
0.341 |
|
| 2014 |
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Odom DT, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679 |
0.351 |
|
| 2014 |
Schmitt BM, Rudolph KL, Karagianni P, Fonseca NA, White RJ, Talianidis I, Odom DT, Marioni JC, Kutter C. High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface. Genome Research. 24: 1797-807. PMID 25122613 DOI: 10.1101/Gr.176784.114 |
0.337 |
|
| 2014 |
Blanco S, Dietmann S, Flores JV, Hussain S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M, Kellner S, Hölter SM, Garrett L, Wurst W, Becker L, ... ... Odom DT, et al. Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. The Embo Journal. 33: 2020-39. PMID 25063673 DOI: 10.15252/Embj.201489282 |
0.308 |
|
| 2014 |
Villar D, Flicek P, Odom DT. Evolution of transcription factor binding in metazoans - mechanisms and functional implications. Nature Reviews. Genetics. 15: 221-33. PMID 24590227 DOI: 10.1038/Nrg3481 |
0.436 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Odom DT, et al. Author response: Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways Elife. DOI: 10.7554/Elife.02626.031 |
0.336 |
|
| 2013 |
Schwalie PC, Ward MC, Cain CE, Faure AJ, Gilad Y, Odom DT, Flicek P. Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes. Genome Biology. 14: R148. PMID 24380390 DOI: 10.1186/Gb-2013-14-12-R148 |
0.399 |
|
| 2013 |
Feig C, Odom DT. Cohesin's role as an active chromatin domain anchorage revealed. The Embo Journal. 32: 3114-5. PMID 24270571 DOI: 10.1038/Emboj.2013.248 |
0.413 |
|
| 2013 |
Aldridge S, Watt S, Quail MA, Rayner T, Lukk M, Bimson MF, Gaffney D, Odom DT. AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation. Genome Biology. 14: R124. PMID 24200198 DOI: 10.1186/Gb-2013-14-11-R124 |
0.325 |
|
| 2013 |
Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, Flicek P, Odom DT. Cooperativity and rapid evolution of cobound transcription factors in closely related mammals. Cell. 154: 530-40. PMID 23911320 DOI: 10.1016/J.Cell.2013.07.007 |
0.419 |
|
| 2013 |
Merkenschlager M, Odom DT. CTCF and cohesin: linking gene regulatory elements with their targets. Cell. 152: 1285-97. PMID 23498937 DOI: 10.1016/J.Cell.2013.02.029 |
0.383 |
|
| 2013 |
Funnell AP, Wilson MD, Ballester B, Mak KS, Burdach J, Magan N, Pearson RC, Lemaigre FP, Stowell KM, Odom DT, Flicek P, Crossley M. A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden. American Journal of Human Genetics. 92: 460-7. PMID 23472758 DOI: 10.1016/J.Ajhg.2013.02.003 |
0.313 |
|
| 2013 |
Long HK, Sims D, Heger A, Blackledge NP, Kutter C, Wright ML, Grützner F, Odom DT, Patient R, Ponting CP, Klose RJ. Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates. Elife. 2: e00348. PMID 23467541 DOI: 10.7554/Elife.00348 |
0.412 |
|
| 2013 |
Ward MC, Wilson MD, Barbosa-Morais NL, Schmidt D, Stark R, Pan Q, Schwalie PC, Menon S, Lukk M, Watt S, Thybert D, Kutter C, Kirschner K, Flicek P, Blencowe BJ, ... Odom DT, et al. Latent regulatory potential of human-specific repetitive elements. Molecular Cell. 49: 262-72. PMID 23246434 DOI: 10.1016/J.Molcel.2012.11.013 |
0.384 |
|
| 2012 |
Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC. Extensive compensatory cis-trans regulation in the evolution of mouse gene expression. Genome Research. 22: 2376-84. PMID 22919075 DOI: 10.1101/Gr.142281.112 |
0.308 |
|
| 2012 |
Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC. Rapid turnover of long noncoding RNAs and the evolution of gene expression. Plos Genetics. 8: e1002841. PMID 22844254 DOI: 10.1371/Journal.Pgen.1002841 |
0.41 |
|
| 2012 |
Chandra T, Kirschner K, Thuret JY, Pope BD, Ryba T, Newman S, Ahmed K, Samarajiwa SA, Salama R, Carroll T, Stark R, Janky R, Narita M, Xue L, Chicas A, ... ... Odom DT, et al. Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation. Molecular Cell. 47: 203-14. PMID 22795131 DOI: 10.1016/J.Molcel.2012.06.010 |
0.318 |
|
| 2012 |
Faure AJ, Schmidt D, Watt S, Schwalie PC, Wilson MD, Xu H, Ramsay RG, Odom DT, Flicek P. Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. Genome Research. 22: 2163-75. PMID 22780989 DOI: 10.1101/Gr.136507.111 |
0.439 |
|
| 2012 |
Pope BD, Chandra T, Buckley Q, Hoare M, Ryba T, Wiseman FK, Kuta A, Wilson MD, Odom DT, Gilbert DM. Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse. Human Molecular Genetics. 21: 4162-70. PMID 22736031 DOI: 10.1093/Hmg/Dds232 |
0.391 |
|
| 2012 |
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, ... ... Odom DT, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842 |
0.346 |
|
| 2012 |
Schmidt D, Schwalie PC, Wilson MD, Ballester B, Gonçalves A, Kutter C, Brown GD, Marshall A, Flicek P, Odom DT. Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell. 148: 335-48. PMID 22244452 DOI: 10.1016/J.Cell.2011.11.058 |
0.437 |
|
| 2012 |
Holmes KA, Hurtado A, Brown GD, Launchbury R, Ross-Innes CS, Hadfield J, Odom DT, Carroll JS. Transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 2748-53. PMID 21536917 DOI: 10.1073/Pnas.1018863108 |
0.36 |
|
| 2011 |
Nascimento EM, Cox CL, MacArthur S, Hussain S, Trotter M, Blanco S, Suraj M, Nichols J, Kübler B, Benitah SA, Hendrich B, Odom DT, Frye M. The opposing transcriptional functions of Sin3a and c-Myc are required to maintain tissue homeostasis. Nature Cell Biology. 13: 1395-405. PMID 22101514 DOI: 10.1038/Ncb2385 |
0.328 |
|
| 2011 |
Odom DT. Identification of Transcription Factor-DNA Interactions In Vivo. Sub-Cellular Biochemistry. 52: 175-91. PMID 21557083 DOI: 10.1007/978-90-481-9069-0_8 |
0.494 |
|
| 2011 |
Ip JY, Schmidt D, Pan Q, Ramani AK, Fraser AG, Odom DT, Blencowe BJ. Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation. Genome Research. 21: 390-401. PMID 21163941 DOI: 10.1101/Gr.111070.110 |
0.311 |
|
| 2010 |
Leigh-Brown S, Enriquez JA, Odom DT. Nuclear transcription factors in mammalian mitochondria. Genome Biology. 11: 215. PMID 20670382 DOI: 10.1186/Gb-2010-11-7-215 |
0.339 |
|
| 2010 |
Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, Marshall A, Kutter C, Watt S, Martinez-Jimenez CP, Mackay S, Talianidis I, Flicek P, Odom DT. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science (New York, N.Y.). 328: 1036-40. PMID 20378774 DOI: 10.1126/Science.1186176 |
0.474 |
|
| 2010 |
Schmidt D, Schwalie PC, Ross-Innes CS, Hurtado A, Brown GD, Carroll JS, Flicek P, Odom DT. A CTCF-independent role for cohesin in tissue-specific transcription. Genome Research. 20: 578-88. PMID 20219941 DOI: 10.1101/Gr.100479.109 |
0.387 |
|
| 2010 |
Bienvenu F, Jirawatnotai S, Elias JE, Meyer CA, Mizeracka K, Marson A, Frampton GM, Cole MF, Odom DT, Odajima J, Geng Y, Zagozdzon A, Jecrois M, Young RA, Liu XS, et al. Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen. Nature. 463: 374-8. PMID 20090754 DOI: 10.1038/Nature08684 |
0.342 |
|
| 2010 |
Flicek P, Schmidt D, Wilson M, Ballester B, Schwalie P, Brown G, Marshall A, Kutter C, Watt S, Odom D. The evolution of mammalian transcription factor binding New Biotechnology. 27: S4. DOI: 10.1016/J.Nbt.2010.01.295 |
0.358 |
|
| 2010 |
Kutter C, Brown G, Watt S, Odom D. Conservation and evolution of tRNA transcription in mammals New Biotechnology. 27: S34. DOI: 10.1016/J.Nbt.2010.01.041 |
0.322 |
|
| 2009 |
Wilson MD, Odom DT. Evolution of transcriptional control in mammals. Current Opinion in Genetics & Development. 19: 579-85. PMID 19913406 DOI: 10.1016/J.Gde.2009.10.003 |
0.449 |
|
| 2009 |
Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT. ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactions Methods. 48: 240-248. PMID 19275939 DOI: 10.1016/J.Ymeth.2009.03.001 |
0.418 |
|
| 2008 |
Schmidt D, Stark R, Wilson MD, Brown GD, Odom DT. Genome-scale validation of deep-sequencing libraries. Plos One. 3: e3713. PMID 19002256 DOI: 10.1371/Journal.Pone.0003713 |
0.351 |
|
| 2008 |
Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, Tybulewicz VL, Fisher EM, Tavaré S, Odom DT. Species-specific transcription in mice carrying human chromosome 21. Science (New York, N.Y.). 322: 434-8. PMID 18787134 DOI: 10.1126/Science.1160930 |
0.398 |
|
| 2007 |
Conboy CM, Spyrou C, Thorne NP, Wade EJ, Barbosa-Morais NL, Wilson MD, Bhattacharjee A, Young RA, Tavaré S, Lees JA, Odom DT. Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor. Plos One. 2: e1061. PMID 17957245 DOI: 10.1371/Journal.Pone.0001061 |
0.383 |
|
| 2007 |
Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nature Genetics. 39: 730-2. PMID 17529977 DOI: 10.1038/Ng2047 |
0.396 |
|
| 2006 |
Palomero T, Lim WK, Odom DT, Sulis ML, Real PJ, Margolin A, Barnes KC, O'Neil J, Neuberg D, Weng AP, Aster JC, Sigaux F, Soulier J, Look AT, Young RA, et al. NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth. Proceedings of the National Academy of Sciences of the United States of America. 103: 18261-6. PMID 17114293 DOI: 10.1073/Pnas.0606108103 |
0.313 |
|
| 2006 |
Wardle FC, Odom DT, Bell GW, Yuan B, Danford TW, Wiellette EL, Herbolsheimer E, Sive HL, Young RA, Smith JC. Zebrafish promoter microarrays identify actively transcribed embryonic genes. Genome Biology. 7: R71. PMID 16889661 DOI: 10.1186/Gb-2006-7-8-R71 |
0.459 |
|
| 2006 |
Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA. Core transcriptional regulatory circuitry in human hepatocytes. Molecular Systems Biology. 2: 2006.0017. PMID 16738562 DOI: 10.1038/Msb4100059 |
0.367 |
|
| 2006 |
Lee TI, Jenner RG, Boyer LA, Guenther MG, Levine SS, Kumar RM, Chevalier B, Johnstone SE, Cole MF, Isono K, Koseki H, Fuchikami T, Abe K, Murray HL, Zucker JP, ... ... Odom DT, et al. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell. 125: 301-13. PMID 16630818 DOI: 10.1016/J.Cell.2006.02.043 |
0.349 |
|
| 2006 |
Palomero T, Odom DT, O'Neil J, Ferrando AA, Margolin A, Neuberg DS, Winter SS, Larson RS, Li W, Liu XS, Young RA, Look AT. Transcriptional regulatory networks downstream of TAL1/SCL in T-cell acute lymphoblastic leukemia. Blood. 108: 986-92. PMID 16621969 DOI: 10.1182/Blood-2005-08-3482 |
0.338 |
|
| 2006 |
Scacheri PC, Davis S, Odom DT, Crawford GE, Perkins S, Halawi MJ, Agarwal SK, Marx SJ, Spiegel AM, Meltzer PS, Collins FS. Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis. Plos Genetics. 2: e51. PMID 16604156 DOI: 10.1371/Journal.Pgen.0020051 |
0.373 |
|
| 2006 |
Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E. A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data. Bioinformatics (Oxford, England). 22: 423-9. PMID 16332710 DOI: 10.1093/Bioinformatics/Bti815 |
0.384 |
|
| 2005 |
Zhang X, Odom DT, Koo SH, Conkright MD, Canettieri G, Best J, Chen H, Jenner R, Herbolsheimer E, Jacobsen E, Kadam S, Ecker JR, Emerson B, Hogenesch JB, Unterman T, et al. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proceedings of the National Academy of Sciences of the United States of America. 102: 4459-64. PMID 15753290 DOI: 10.1073/Pnas.0501076102 |
0.373 |
|
| 2004 |
Odom DT, Zizlsperger N, Gordon DB, Bell GW, Rinaldi NJ, Murray HL, Volkert TL, Schreiber J, Rolfe PA, Gifford DK, Fraenkel E, Bell GI, Young RA. Control of pancreas and liver gene expression by HNF transcription factors. Science (New York, N.Y.). 303: 1378-81. PMID 14988562 DOI: 10.1126/Science.1089769 |
0.353 |
|
| 2004 |
Palomero T, Odom DT, O’Neil J, Ferrando AA, Winter SS, Larson RS, Young RA, Look AT. Genome-Wide Transcriptional Regulatory Networks Downstream of TAL1/SCL in T-Cell Acute Lymphoblastic Leukemia. Blood. 104: 416-416. DOI: 10.1182/Blood.V104.11.416.416 |
0.39 |
|
| 2002 |
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (New York, N.Y.). 298: 799-804. PMID 12399584 DOI: 10.1126/Science.1075090 |
0.31 |
|
| 2001 |
Odom DT, Barton JK. Long-range oxidative damage in DNA/RNA duplexes. Biochemistry. 40: 8727-37. PMID 11467932 DOI: 10.1021/Bi0102961 |
0.56 |
|
| 2001 |
Odom DT, Dill EA, Barton JK. Charge transport through DNA four-way junctions Nucleic Acids Research. 29: 2026-2033. PMID 11353071 DOI: 10.1093/Nar/29.10.2026 |
0.535 |
|
| 2000 |
Odom DT, Dill EA, Barton JK. Robust charge transport in DNA double crossover assemblies Chemistry and Biology. 7: 475-481. PMID 10903935 DOI: 10.1016/S1074-5521(00)00133-2 |
0.561 |
|
| 2000 |
Williams TT, Odom DT, Barton JK. Variations in DNA Charge Transport with Nucleotide Composition and Sequence Journal of the American Chemical Society. 122: 9048-9049. DOI: 10.1021/Ja001552K |
0.695 |
|
| 2000 |
Vicie DA, Odom DT, Núñez ME, Gianolio DA, McLaughlin LW, Barton JK. Oxidative repair of a thymine dimer in DNA from a distance by a covalently linked organic intercalator Journal of the American Chemical Society. 122: 8603-8611. DOI: 10.1021/Ja000280I |
0.715 |
|
| 1999 |
Erkkila KE, Odom DT, Barton JK. Recognition and reaction of metallointercalators with DNA. Chemical Reviews. 99: 2777-96. PMID 11749500 DOI: 10.1021/Cr9804341 |
0.632 |
|
| 1999 |
Odom DT, Parker CS, Barton JK. Site-specific inhibition of transcription factor binding to DNA by a metallointercalator. Biochemistry. 38: 5155-63. PMID 10213621 DOI: 10.1021/Bi9827969 |
0.576 |
|
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