Niels Klitgord - Publications

Bioinformatics Boston University, Boston, MA, United States 

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/Fmicb.2015.00277  0.4
2015 Regan JF, Kamitaki N, Legler T, Cooper S, Klitgord N, Karlin-Neumann G, Wong C, Hodges S, Koehler R, Tzonev S, McCarroll SA. A rapid molecular approach for chromosomal phasing. Plos One. 10: e0118270. PMID 25739099 DOI: 10.1371/Journal.Pone.0118270  0.4
2013 McDermott GP, Do D, Litterst CM, Maar D, Hindson CM, Steenblock ER, Legler TC, Jouvenot Y, Marrs SH, Bemis A, Shah P, Wong J, Wang S, Sally D, Javier L, ... ... Klitgord N, et al. Multiplexed target detection using DNA-binding dye chemistry in droplet digital PCR. Analytical Chemistry. 85: 11619-27. PMID 24180464 DOI: 10.1021/Ac403061N  0.4
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638  0.4
2013 Harcombe WR, Delaney NF, Leiby N, Klitgord N, Marx CJ. The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum. Plos Computational Biology. 9: e1003091. PMID 23818838 DOI: 10.1371/Journal.Pcbi.1003091  0.4
2013 Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/Ismej.2013.83  0.4
2012 Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, et al. Deep sequencing of the oral microbiome reveals signatures of periodontal disease Plos One. 7. PMID 22675498 DOI: 10.1371/Journal.Pone.0037919  0.4
2012 Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segrè D. Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis. Nucleic Acids Research. 40: 7132-49. PMID 22638572 DOI: 10.1093/nar/gks467  0.4
2011 Klitgord N, Segrè D. Ecosystems biology of microbial metabolism. Current Opinion in Biotechnology. 22: 541-6. PMID 21592777 DOI: 10.1016/J.Copbio.2011.04.018  0.32
2011 Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, et al. COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Research. 39: D11-4. PMID 21097892 DOI: 10.1093/Nar/Gkq1168  0.4
2010 Klitgord N, Segrè D. Environments that induce synthetic microbial ecosystems. Plos Computational Biology. 6: e1001002. PMID 21124952 DOI: 10.1371/Journal.Pcbi.1001002  0.32
2010 Yan H, Venkatesan K, Beaver JE, Klitgord N, Yildirim MA, Hao T, Hill DE, Cusick ME, Perrimon N, Roth FP, Vidal M. A genome-wide gene function prediction resource for Drosophila melanogaster. Plos One. 5: e12139. PMID 20711346 DOI: 10.1371/Journal.Pone.0012139  0.4
2010 Schütte M, Klitgord N, Segrè D, Ebenhöh O. Co-evolution of metabolism and protein sequences. Genome Informatics. International Conference On Genome Informatics. 22: 156-66. PMID 20238426  0.32
2010 Klitgord N, Segrè D. The importance of compartmentalization in metabolic flux models: yeast as an ecosystem of organelles. Genome Informatics. International Conference On Genome Informatics. 22: 41-55. PMID 20238418  0.32
2009 Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, et al. Edgetic perturbation models of human inherited disorders. Molecular Systems Biology. 5: 321. PMID 19888216 DOI: 10.1038/Msb.2009.80  0.4
2009 Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, et al. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nature Methods. 6: 47-54. PMID 19123269 DOI: 10.1038/Nmeth.1279  0.4
2009 Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, ... ... Klitgord N, et al. An empirical framework for binary interactome mapping. Nature Methods. 6: 83-90. PMID 19060904 DOI: 10.1038/Nmeth.1280  0.4
2008 Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/J.Cell.2008.07.009  0.4
2008 Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, et al. Revisiting the Saccharomyces cerevisiae predicted ORFeome. Genome Research. 18: 1294-303. PMID 18502943 DOI: 10.1101/Gr.076661.108  0.4
2008 Imielinski M, Klitgord N, Belta C. Investigating the genomic basis of metabolic robustness through in silico flux analysis Proceedings of the Ieee Conference On Decision and Control. 793-798. DOI: 10.1109/CDC.2008.4739459  0.4
2006 Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, Iakoucheva LM. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. Plos Computational Biology. 2: e100. PMID 16884331 DOI: 10.1371/Journal.Pcbi.0020100  0.4
2005 Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature. 437: 1173-8. PMID 16189514 DOI: 10.1038/Nature04209  0.4
2005 Baker PW, Tanaka KK, Klitgord N, Cripps RM. Adult myogenesis in Drosophila melanogaster can proceed independently of myocyte enhancer factor-2. Genetics. 170: 1747-59. PMID 15956678 DOI: 10.1534/Genetics.105.041749  0.4
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