| Year |
Citation |
Score |
| 2024 |
Tellini N, De Chiara M, Mozzachiodi S, Tattini L, Vischioni C, Naumova ES, Warringer J, Bergström A, Liti G. Ancient and recent origins of shared polymorphisms in yeast. Nature Ecology & Evolution. PMID 38472432 DOI: 10.1038/s41559-024-02352-5 |
0.634 |
|
| 2023 |
Li J, Stenberg S, Yue JX, Mikhalev E, Thompson D, Warringer J, Liti G. Genome instability footprint under rapamycin and hydroxyurea treatments. Plos Genetics. 19: e1011012. PMID 37931001 DOI: 10.1371/journal.pgen.1011012 |
0.64 |
|
| 2022 |
Jouhten P, Konstantinidis D, Pereira F, Andrejev S, Grkovska K, Castillo S, Ghiachi P, Beltran G, Almaas E, Mas A, Warringer J, Gonzalez R, Morales P, Patil KR. Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology. 18: e10980. PMID 36201279 DOI: 10.15252/msb.202210980 |
0.326 |
|
| 2022 |
Stenberg S, Li J, Gjuvsland AB, Persson K, Demitz-Helin E, González Peña C, Yue JX, Gilchrist C, Ärengård T, Ghiaci P, Larsson-Berghund L, Zackrisson M, Smits S, Hallin J, Höög JL, ... ... Warringer J, et al. Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative phosphorylation. Elife. 11. PMID 35801695 DOI: 10.7554/eLife.76095 |
0.739 |
|
| 2022 |
Van Wonterghem L, De Chiara M, Liti G, Warringer J, Farewell A, Verstraeten N, Michiels J. Genome-Wide Association Study Reveals Host Factors Affecting Conjugation in . Microorganisms. 10. PMID 35336183 DOI: 10.3390/microorganisms10030608 |
0.601 |
|
| 2022 |
De Chiara M, Barré BP, Persson K, Irizar A, Vischioni C, Khaiwal S, Stenberg S, Amadi OC, Žun G, Doberšek K, Taccioli C, Schacherer J, Petrovič U, Warringer J, Liti G. Domestication reprogrammed the budding yeast life cycle. Nature Ecology & Evolution. PMID 35210580 DOI: 10.1038/s41559-022-01671-9 |
0.671 |
|
| 2021 |
Mozzachiodi S, Tattini L, Llored A, Irizar A, Škofljanc N, D'Angiolo M, De Chiara M, Barré BP, Yue JX, Lutazi A, Loeillet S, Laureau R, Marsit S, Stenberg S, Albaud B, ... ... Warringer J, et al. Aborting meiosis allows recombination in sterile diploid yeast hybrids. Nature Communications. 12: 6564. PMID 34772931 DOI: 10.1038/s41467-021-26883-8 |
0.676 |
|
| 2021 |
Benkwitz-Bedford S, Palm M, Demirtas TY, Mustonen V, Farewell A, Warringer J, Parts L, Moradigaravand D. Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes. Msystems. 6: e0034621. PMID 34427505 DOI: 10.1128/mSystems.00346-21 |
0.318 |
|
| 2020 |
D'Angiolo M, De Chiara M, Yue JX, Irizar A, Stenberg S, Persson K, Llored A, Barré B, Schacherer J, Marangoni R, Gilson E, Warringer J, Liti G. A yeast living ancestor reveals the origin of genomic introgressions. Nature. PMID 33177709 DOI: 10.1038/s41586-020-2889-1 |
0.645 |
|
| 2020 |
Barre B, Hallin J, Yue JX, Persson K, Mikhalev E, Irizar A, Holt S, Thompson D, Molin M, Warringer J, Liti G. Intragenic repeat expansion in the cell wall protein gene controls yeast chronological aging. Genome Research. PMID 32277013 DOI: 10.1101/Gr.253351.119 |
0.77 |
|
| 2019 |
Li J, Vázquez-García I, Persson K, González A, Yue JX, Barré B, Hall MN, Long A, Warringer J, Mustonen V, Liti G. Shared molecular targets confer resistance over short and long evolutionary timescales. Molecular Biology and Evolution. PMID 30657986 DOI: 10.1093/Molbev/Msz006 |
0.692 |
|
| 2018 |
Moradigaravand D, Palm M, Farewell A, Mustonen V, Warringer J, Parts L. Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data. Plos Computational Biology. 14: e1006258. PMID 30550564 DOI: 10.1371/Journal.Pcbi.1006258 |
0.386 |
|
| 2017 |
Vázquez-García I, Salinas F, Li J, Fischer A, Barré B, Hallin J, Bergström A, Alonso-Perez E, Warringer J, Mustonen V, Liti G. Clonal Heterogeneity Influences the Fate of New Adaptive Mutations. Cell Reports. 21: 732-744. PMID 29045840 DOI: 10.1016/J.Celrep.2017.09.046 |
0.78 |
|
| 2017 |
Liti G, Warringer J, Blomberg A. Budding Yeast Strains and Genotype-Phenotype Mapping. Cold Spring Harbor Protocols. 2017: pdb.top077735. PMID 28765302 DOI: 10.1101/Pdb.Top077735 |
0.693 |
|
| 2017 |
Warringer J, Liti G, Blomberg A. Yeast Reciprocal Hemizygosity to Confirm the Causality of a Quantitative Trait Loci-Associated Gene. Cold Spring Harbor Protocols. 2017: pdb.prot089078. PMID 28765294 DOI: 10.1101/Pdb.Prot089078 |
0.675 |
|
| 2017 |
Liti G, Warringer J, Blomberg A. Mapping Quantitative Trait Loci in Yeast. Cold Spring Harbor Protocols. 2017: pdb.prot089060. PMID 28765293 DOI: 10.1101/Pdb.Prot089060 |
0.686 |
|
| 2017 |
Liti G, Warringer J, Blomberg A. Isolation and Laboratory Domestication of Natural Yeast Strains. Cold Spring Harbor Protocols. 2017: pdb.prot089052. PMID 28765292 DOI: 10.1101/Pdb.Prot089052 |
0.635 |
|
| 2017 |
Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nature Genetics. PMID 28416820 DOI: 10.1038/Ng.3847 |
0.788 |
|
| 2016 |
Gjuvsland AB, Zörgö E, Samy JK, Stenberg S, Demirsoy IH, Roque F, Maciaszczyk-Dziubinska E, Migocka M, Alonso-Perez E, Zackrisson M, Wysocki R, Tamás MJ, Jonassen I, Omholt SW, Warringer J. Disentangling genetic and epigenetic determinants of ultrafast adaptation. Molecular Systems Biology. 12: 892. PMID 27979908 DOI: 10.15252/Msb.20166951 |
0.414 |
|
| 2016 |
Hallin J, Märtens K, Young AI, Zackrisson M, Salinas F, Parts L, Warringer J, Liti G. Powerful decomposition of complex traits in a diploid model. Nature Communications. 7: 13311. PMID 27804950 DOI: 10.1038/Ncomms13311 |
0.79 |
|
| 2016 |
Zackrisson M, Hallin J, Ottosson LG, Dahl P, Fernandez-Parada E, Ländström E, Fernandez-Ricaud L, Kaferle P, Skyman A, Stenberg S, Omholt S, Petrovic U, Warringer J, Blomberg A. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale. G3 (Bethesda, Md.). PMID 27371952 DOI: 10.1534/G3.116.032342 |
0.781 |
|
| 2016 |
Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A. PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics. Bmc Bioinformatics. 17: 249. PMID 27334112 DOI: 10.1186/S12859-016-1134-2 |
0.397 |
|
| 2016 |
Märtens K, Hallin J, Warringer J, Liti G, Parts L. Predicting quantitative traits from genome and phenome with near perfect accuracy. Nature Communications. 7: 11512. PMID 27160605 DOI: 10.1038/Ncomms11512 |
0.783 |
|
| 2016 |
Gutiérrez A, Sancho M, Beltran G, Guillamon JM, Warringer J. Replenishment and mobilization of intracellular nitrogen pools decouples wine yeast nitrogen uptake from growth. Applied Microbiology and Biotechnology. 100: 3255-65. PMID 26754818 DOI: 10.1007/S00253-015-7273-Y |
0.32 |
|
| 2015 |
Kohler A, Böcker U, Shapaval V, Forsmark A, Andersson M, Warringer J, Martens H, Omholt SW, Blomberg A. High-throughput biochemical fingerprinting of Saccharomyces cerevisiae by Fourier transform infrared spectroscopy. Plos One. 10: e0118052. PMID 25706524 DOI: 10.1371/journal.pone.0118052 |
0.339 |
|
| 2015 |
Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JK, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J. Concerted evolution of life stage performances signals recent selection on yeast nitrogen use. Molecular Biology and Evolution. 32: 153-61. PMID 25349282 DOI: 10.1093/Molbev/Msu285 |
0.684 |
|
| 2014 |
Brown WR, Thomas G, Lee NC, Blythe M, Liti G, Warringer J, Loose MW. Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces pombe. Proceedings of the National Academy of Sciences of the United States of America. 111: 1903-8. PMID 24449889 DOI: 10.1073/Pnas.1216934111 |
0.626 |
|
| 2014 |
Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. A high-definition view of functional genetic variation from natural yeast genomes. Molecular Biology and Evolution. 31: 872-88. PMID 24425782 DOI: 10.1093/Molbev/Msu037 |
0.722 |
|
| 2013 |
Cubillos FA, Parts L, Salinas F, Bergström A, Scovacricchi E, Zia A, Illingworth CJ, Mustonen V, Ibstedt S, Warringer J, Louis EJ, Durbin R, Liti G. High-resolution mapping of complex traits with a four-parent advanced intercross yeast population. Genetics. 195: 1141-55. PMID 24037264 DOI: 10.1534/Genetics.113.155515 |
0.712 |
|
| 2013 |
Gutiérrez A, Beltran G, Warringer J, Guillamón JM. Genetic basis of variations in nitrogen source utilization in four wine commercial yeast strains. Plos One. 8: e67166. PMID 23826223 DOI: 10.1371/Journal.Pone.0067166 |
0.409 |
|
| 2013 |
Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J. Ancient evolutionary trade-offs between yeast ploidy states. Plos Genetics. 9: e1003388. PMID 23555297 DOI: 10.1371/Journal.Pgen.1003388 |
0.698 |
|
| 2013 |
Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA. High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome. Bmc Genomics. 14: 69. PMID 23368932 DOI: 10.1186/1471-2164-14-69 |
0.658 |
|
| 2013 |
Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J. Cell size partially explains ploidy–environment interactions. Plos Genetics. DOI: 10.1371/Journal.Pgen.1003388.G004 |
0.561 |
|
| 2013 |
Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J. Patterns of ploidy–environment interactions refute generalizing hypotheses on the effects of mutational load, toxin exposure, and nutrient restriction. Plos Genetics. DOI: 10.1371/Journal.Pgen.1003388.G003 |
0.568 |
|
| 2012 |
Mehmood T, Warringer J, Snipen L, Sæbø S. Improving stability and understandability of genotype-phenotype mapping in Saccharomyces using regularized variable selection in L-PLS regression. Bmc Bioinformatics. 13: 327. PMID 23216988 DOI: 10.1186/1471-2105-13-327 |
0.351 |
|
| 2012 |
Salinas F, Cubillos FA, Soto D, Garcia V, Bergström A, Warringer J, Ganga MA, Louis EJ, Liti G, Martinez C. The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae. Plos One. 7: e49640. PMID 23185390 DOI: 10.1371/Journal.Pone.0049640 |
0.7 |
|
| 2012 |
Hodgins-Davis A, Adomas AB, Warringer J, Townsend JP. Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae. Genome Biology and Evolution. 4: 1061-79. PMID 23019066 DOI: 10.1093/Gbe/Evs084 |
0.42 |
|
| 2012 |
Mehmood T, Bohlin J, Kristoffersen AB, Sæbø S, Warringer J, Snipen L. Exploration of multivariate analysis in microbial coding sequence modeling. Bmc Bioinformatics. 13: 97. PMID 22583558 DOI: 10.1186/1471-2105-13-97 |
0.318 |
|
| 2012 |
Zörgö E, Gjuvsland A, Cubillos FA, Louis EJ, Liti G, Blomberg A, Omholt SW, Warringer J. Life history shapes trait heredity by accumulation of loss-of-function alleles in yeast. Molecular Biology and Evolution. 29: 1781-9. PMID 22319169 DOI: 10.1093/Molbev/Mss019 |
0.695 |
|
| 2011 |
Brown WR, Liti G, Rosa C, James S, Roberts I, Robert V, Jolly N, Tang W, Baumann P, Green C, Schlegel K, Young J, Hirchaud F, Leek S, Thomas G, ... ... Warringer J, et al. A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity. G3 (Bethesda, Md.). 1: 615-26. PMID 22384373 DOI: 10.1534/G3.111.001123 |
0.652 |
|
| 2011 |
Mehmood T, Martens H, Saebø S, Warringer J, Snipen L. Mining for genotype-phenotype relations in Saccharomyces using partial least squares. Bmc Bioinformatics. 12: 318. PMID 21812956 DOI: 10.1186/1471-2105-12-318 |
0.413 |
|
| 2011 |
Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait variation in yeast is defined by population history. Plos Genetics. 7: e1002111. PMID 21698134 DOI: 10.1371/Journal.Pgen.1002111 |
0.724 |
|
| 2011 |
Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/Nbt.1832 |
0.462 |
|
| 2011 |
Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ, Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R, Liti G. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Research. 21: 1131-8. PMID 21422276 DOI: 10.1101/Gr.116731.110 |
0.706 |
|
| 2011 |
Park EH, Zhang F, Warringer J, Sunnerhagen P, Hinnebusch AG. Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide. Bmc Genomics. 12: 68. PMID 21269496 DOI: 10.1186/1471-2164-12-68 |
0.325 |
|
| 2011 |
Cubillos FA, Billi E, Zörgö E, Parts L, Fargier P, Omholt S, Blomberg A, Warringer J, Louis EJ, Liti G. Assessing the complex architecture of polygenic traits in diverged yeast populations. Molecular Ecology. 20: 1401-13. PMID 21261765 DOI: 10.1111/J.1365-294X.2011.05005.X |
0.71 |
|
| 2010 |
Ottosson LG, Logg K, Ibstedt S, Sunnerhagen P, Käll M, Blomberg A, Warringer J. Sulfate assimilation mediates tellurite reduction and toxicity in Saccharomyces cerevisiae. Eukaryotic Cell. 9: 1635-47. PMID 20675578 DOI: 10.1128/Ec.00078-10 |
0.347 |
|
| 2009 |
Gombault A, Warringer J, Caesar R, Godin F, Vallée B, Doudeau M, Chautard H, Blomberg A, Bénédetti H. A phenotypic study of TFS1 mutants differentially altered in the inhibition of Ira2p or CPY. Fems Yeast Research. 9: 867-74. PMID 19552705 DOI: 10.1111/J.1567-1364.2009.00535.X |
0.31 |
|
| 2009 |
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJ, van Oudenaarden A, et al. Population genomics of domestic and wild yeasts. Nature. 458: 337-41. PMID 19212322 DOI: 10.1038/Nature07743 |
0.705 |
|
| 2008 |
Jansson K, Warringer J, Farewell A, Park HO, Hoe KL, Kim DU, Hayles J, Sunnerhagen P. The tumor suppressor homolog in fission yeast, myh1(+), displays a strong interaction with the checkpoint gene rad1(+). Mutation Research. 644: 48-55. PMID 18675827 DOI: 10.1016/J.Mrfmmm.2008.07.001 |
0.318 |
|
| 2008 |
Esguerra J, Warringer J, Blomberg A. Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping. Rna (New York, N.Y.). 14: 649-56. PMID 18256246 DOI: 10.1261/Rna.845808 |
0.37 |
|
| 2007 |
Fernandez-Ricaud L, Warringer J, Ericson E, Glaab K, Davidsson P, Nilsson F, Kemp GJ, Nerman O, Blomberg A. PROPHECY--a yeast phenome database, update 2006. Nucleic Acids Research. 35: D463-7. PMID 17148481 DOI: 10.1093/Nar/Gkl1029 |
0.433 |
|
| 2006 |
Warringer J, Blomberg A. Evolutionary constraints on yeast protein size. Bmc Evolutionary Biology. 6: 61. PMID 16911784 DOI: 10.1186/1471-2148-6-61 |
0.332 |
|
| 2006 |
Osterberg M, Kim H, Warringer J, Melén K, Blomberg A, von Heijne G. Phenotypic effects of membrane protein overexpression in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 103: 11148-53. PMID 16847257 DOI: 10.1073/Pnas.0604078103 |
0.304 |
|
| 2006 |
Warringer J, Blomberg A. Involvement of yeast YOL151W/GRE2 in ergosterol metabolism. Yeast (Chichester, England). 23: 389-98. PMID 16598690 DOI: 10.1002/Yea.1363 |
0.358 |
|
| 2006 |
Ericson E, Pylvänäinen I, Fernandez-Ricaud L, Nerman O, Warringer J, Blomberg A. Genetic pleiotropy in Saccharomyces cerevisiae quantified by high-resolution phenotypic profiling. Molecular Genetics and Genomics : Mgg. 275: 605-14. PMID 16534619 DOI: 10.1007/S00438-006-0112-1 |
0.452 |
|
| 2006 |
Caesar R, Warringer J, Blomberg A. Physiological importance and identification of novel targets for the N-terminal acetyltransferase NatB. Eukaryotic Cell. 5: 368-78. PMID 16467477 DOI: 10.1128/Ec.5.2.368-378.2006 |
0.362 |
|
| 2005 |
Fernandez-Ricaud L, Warringer J, Ericson E, Pylvänäinen I, Kemp GJ, Nerman O, Blomberg A. PROPHECY--a database for high-resolution phenomics. Nucleic Acids Research. 33: D369-73. PMID 15608218 DOI: 10.1093/Nar/Gki126 |
0.419 |
|
| 2003 |
Warringer J, Ericson E, Fernandez L, Nerman O, Blomberg A. High-resolution yeast phenomics resolves different physiological features in the saline response. Proceedings of the National Academy of Sciences of the United States of America. 100: 15724-9. PMID 14676322 DOI: 10.1073/Pnas.2435976100 |
0.35 |
|
| 2003 |
Warringer J, Blomberg A. Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae. Yeast (Chichester, England). 20: 53-67. PMID 12489126 DOI: 10.1002/Yea.931 |
0.379 |
|
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