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John P. McCrow, Ph.D. - Publications

Affiliations: 
2008 Computational Molecular Biology University of Southern California, Los Angeles, CA, United States 
Area:
Bioinformatics Biology
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jabre LJ, Allen AE, McCain JSP, McCrow JP, Tenenbaum N, Spackeen JL, Sipler RE, Green BR, Bronk DA, Hutchins DA, Bertrand EM. Molecular underpinnings and biogeochemical consequences of enhanced diatom growth in a warming Southern Ocean. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34301906 DOI: 10.1073/pnas.2107238118  0.309
2021 Cohen NR, McIlvin MR, Moran DM, Held NA, Saunders JK, Hawco NJ, Brosnahan M, DiTullio GR, Lamborg C, McCrow JP, Dupont CL, Allen AE, Saito MA. Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. Nature Microbiology. PMID 33398100 DOI: 10.1038/s41564-020-00814-7  0.347
2020 Schulhof MA, Allen AE, Allen EE, Mladenov N, McCrow JP, Jones NT, Blanton J, Cavalheri HB, Kaul D, Symons CC, Shurin JB. Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. Molecular Ecology. PMID 32578266 DOI: 10.1111/Mec.15469  0.348
2019 Smith SR, Dupont CL, McCarthy JK, Broddrick JT, Oborník M, Horák A, Füssy Z, Cihlář J, Kleessen S, Zheng H, McCrow JP, Hixson KK, Araújo WL, Nunes-Nesi A, Fernie A, et al. Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nature Communications. 10: 4552. PMID 31591397 DOI: 10.1038/S41467-019-12407-Y  0.412
2019 Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The Isme Journal. PMID 31320727 DOI: 10.1038/S41396-019-0472-2  0.411
2019 Kranzler CF, Krause JW, Brzezinski MA, Edwards BR, Biggs WP, Maniscalco M, McCrow JP, Van Mooy BAS, Bidle KD, Allen AE, Thamatrakoln K. Silicon limitation facilitates virus infection and mortality of marine diatoms. Nature Microbiology. PMID 31308524 DOI: 10.1038/S41564-019-0502-X  0.315
2018 Brunson JK, McKinnie SMK, Chekan JR, McCrow JP, Miles ZD, Bertrand EM, Bielinski VA, Luhavaya H, Oborník M, Smith GJ, Hutchins DA, Allen AE, Moore BS. Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom. Science (New York, N.Y.). 361: 1356-1358. PMID 30262498 DOI: 10.1126/Science.Aau0382  0.331
2018 Isson TT, Love GD, Dupont CL, Reinhard CT, Zumberge AJ, Asael D, Gueguen B, McCrow J, Gill BC, Owens J, Rainbird RH, Rooney AD, Zhao MY, Stueeken EE, Konhauser KO, et al. Tracking the rise of eukaryotes to ecological dominance with zinc isotopes. Geobiology. 16: 341-352. PMID 29869832 DOI: 10.1111/Gbi.12289  0.347
2018 McQuaid JB, Kustka AB, Oborník M, Horák A, McCrow JP, Karas BJ, Zheng H, Kindeberg T, Andersson AJ, Barbeau KA, Allen AE. Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms. Nature. PMID 29539640 DOI: 10.1038/Nature25982  0.363
2018 Bender SJ, Moran DM, McIlvin MR, Zheng H, McCrow JP, Badger J, DiTullio GR, Allen AE, Saito MA. Iron triggers colony formation in Phaeocystis antarctica : connecting molecular mechanisms with iron biogeochemistry Biogeosciences Discussions. 1-52. DOI: 10.5194/Bg-2017-558  0.375
2018 Bender SJ, Moran DM, McIlvin MR, Zheng H, McCrow JP, Badger J, DiTullio GR, Allen AE, Saito MA. Colony formation in <i>Phaeocystis antarctica</i>: connecting molecular mechanisms with iron biogeochemistry Biogeosciences. 15: 4923-4942. DOI: 10.5194/Bg-15-4923-2018  0.379
2017 Hippmann AA, Schuback N, Moon KM, McCrow JP, Allen AE, Foster LJ, Green BR, Maldonado MT. Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. Plos One. 12: e0181753. PMID 28837661 DOI: 10.1371/Journal.Pone.0181753  0.321
2017 McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth RA, Lichtle C, Goodenough U, Bowler C, Dupont CL, Allen AE. Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom. The Plant Cell. PMID 28765511 DOI: 10.1105/Tpc.16.00910  0.387
2016 Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. Plos Genetics. 12: e1006490. PMID 27973599 DOI: 10.1371/Journal.Pgen.1006490  0.384
2016 Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, et al. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnology For Biofuels. 9: 258. PMID 27933100 DOI: 10.1186/S13068-016-0670-3  0.34
2016 Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, et al. Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume. Plos One. 11: e0160929. PMID 27598790 DOI: 10.1371/Journal.Pone.0160929  0.446
2016 Asplund-Samuelsson J, Sundh J, Dupont CL, Allen AE, McCrow JP, Celepli NA, Bergman B, Ininbergs K, Ekman M. Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem. Frontiers in Microbiology. 7: 1043. PMID 27458440 DOI: 10.3389/Fmicb.2016.01043  0.429
2016 Diner RE, Schwenck SM, McCrow JP, Zheng H, Allen AE. Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms. Frontiers in Microbiology. 7: 880. PMID 27375600 DOI: 10.3389/Fmicb.2016.00880  0.38
2015 Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE. Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge. Proceedings of the National Academy of Sciences of the United States of America. PMID 26221022 DOI: 10.1073/Pnas.1501615112  0.437
2015 Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE. Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. The Isme Journal. 9: 1076-92. PMID 25333462 DOI: 10.1038/Ismej.2014.198  0.416
2014 Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, et al. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. Plos One. 9: e89549. PMID 24586863 DOI: 10.1371/Journal.Pone.0089549  0.412
2013 Allen AE, Allen LZ, McCrow JP. Lineage specific gene family enrichment at the microscale in marine systems. Current Opinion in Microbiology. 16: 605-17. PMID 24377115 DOI: 10.1016/J.Mib.2013.10.001  0.387
2012 Williamson SJ, Allen LZ, Lorenzi HA, Fadrosh DW, Brami D, Thiagarajan M, McCrow JP, Tovchigrechko A, Yooseph S, Venter JC. Metagenomic exploration of viruses throughout the Indian Ocean. Plos One. 7: e42047. PMID 23082107 DOI: 10.1371/Journal.Pone.0042047  0.389
2012 Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE. Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. The Isme Journal. 6: 1403-14. PMID 22278668 DOI: 10.1038/Ismej.2011.201  0.446
2011 Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature. 473: 203-7. PMID 21562560 DOI: 10.1038/Nature10074  0.437
2011 Kan J, Flood B, McCrow JP, Kim JS, Tan L, Nealson KH. A rapid fingerprinting approach to distinguish between closely related strains of Shewanella. Journal of Microbiological Methods. 86: 62-8. PMID 21477623 DOI: 10.1016/J.Mimet.2011.03.017  0.351
2010 Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, et al. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 468: 60-6. PMID 21048761 DOI: 10.1038/Nature09530  0.404
2010 Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, et al. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America. 107: 14679-84. PMID 20668244 DOI: 10.1073/Pnas.1001665107  0.465
2009 McCrow JP. Alignment of phylogenetically unambiguous indels in Shewanella. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1517-28. PMID 19958081 DOI: 10.1089/Cmb.2009.0188  0.356
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