| Year |
Citation |
Score |
| 2023 |
Wright S, Zhao X, Rosikiewicz W, Mryncza S, Hyle J, Qi W, Liu Z, Yi S, Cheng Y, Xu B, Li C. Systematic characterization of the HOXA9 downstream targets in MLL-r leukemia by noncoding CRISPR screens. Nature Communications. 14: 7464. PMID 38016946 DOI: 10.1038/s41467-023-43264-5 |
0.751 |
|
| 2023 |
Barajas JM, Rasouli M, Umeda M, Hiltenbrand RL, Abdelhamed S, Mohnani R, Arthur B, Westover T, Thomas ME, Ashtiani M, Janke LJ, Xu B, Chang TC, Rosikiewicz W, Xiong E, et al. Acute myeloid leukemias with UBTF tandem duplications are sensitive to Menin inhibitors. Blood. PMID 37890156 DOI: 10.1182/blood.2023021359 |
0.746 |
|
| 2023 |
Klco J, Thomas M, Qi W, Walsh M, Ma J, Westover T, Abdelhamed S, Ezzell L, Rolle C, Xiong E, Rosikiewicz W, Xu B, Pruett-Miller S, Loughran A, Janke L. Functional Characterization of Cooperating MGA Mutations in RUNX1::RUNX1T1 Acute Myeloid Leukemia. Research Square. PMID 37790524 DOI: 10.21203/rs.3.rs-3315059/v1 |
0.752 |
|
| 2023 |
Matsui Y, Djekidel MN, Lindsay K, Samir P, Connolly N, Wu G, Yang X, Fan Y, Xu B, Peng JC. SNIP1 and PRC2 coordinate cell fates of neural progenitors during brain development. Nature Communications. 14: 4754. PMID 37553330 DOI: 10.1038/s41467-023-40487-4 |
0.718 |
|
| 2023 |
Lim B, Djekidel MN, Matsui Y, Jung S, Yuan ZF, Wang X, Yang X, Pilehroud AS, Pan H, Wang F, Pruett-Miller S, Kavdia K, Pagala V, Fan Y, Peng J, ... Xu B, et al. Phosphorylation of 53BP1 by ATM enforce neurodevelopmental programs in cortical organoids. Biorxiv : the Preprint Server For Biology. PMID 37205560 DOI: 10.1101/2023.05.04.539457 |
0.725 |
|
| 2023 |
Wright S, Hu J, Wang H, Hyle J, Zhang Y, Du G, Konopleva MY, Kornblau SM, Djekidel MN, Rosikiewicz W, Xu B, Lu R, Yang JJ, Li C. Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220134120. PMID 37036970 DOI: 10.1073/pnas.2220134120 |
0.733 |
|
| 2023 |
Hyle J, Djekidel MN, Williams J, Wright S, Shao Y, Xu B, Li C. Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation. Genome Biology. 24: 14. PMID 36698211 DOI: 10.1186/s13059-022-02843-3 |
0.739 |
|
| 2023 |
Wang R, Bhatt AB, Minden-Birkenmaier BA, Travis OK, Tiwari S, Jia H, Rosikiewicz W, Martinot O, Childs E, Loesch R, Tossou G, Jamieson S, Finkelstein D, Xu B, Labelle M. ZBTB18 restricts chromatin accessibility and prevents transcriptional adaptations that drive metastasis. Science Advances. 9: eabq3951. PMID 36608120 DOI: 10.1126/sciadv.abq3951 |
0.736 |
|
| 2022 |
Zhao X, Wang P, Diedrich JD, Smart B, Reyes N, Yoshimura S, Zhang J, Yang W, Barnett K, Xu B, Li Z, Huang X, Yu J, Crews K, Yeoh AEJ, et al. Epigenetic activation of the FLT3 gene by ZNF384 fusion confers a therapeutic susceptibility in acute lymphoblastic leukemia. Nature Communications. 13: 5401. PMID 36104354 DOI: 10.1038/s41467-022-33143-w |
0.339 |
|
| 2022 |
Wang X, Rosikiewicz W, Sedkov Y, Mondal B, Martinez T, Kallappagoudar S, Tvardovskiy A, Bajpai R, Xu B, Pruett-Miller SM, Schneider R, Herz HM. The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program. Life Science Alliance. 5. PMID 35820704 DOI: 10.26508/lsa.202201572 |
0.737 |
|
| 2022 |
Drosos Y, Myers JA, Xu B, Mathias KM, Beane EC, Radko-Juettner S, Mobley RJ, Larsen ME, Piccioni F, Ma X, Low J, Hansen BS, Peters ST, Bhanu NV, Dhanda SK, et al. NSD1 mediates antagonism between SWI/SNF and polycomb complexes and is required for transcriptional activation upon EZH2 inhibition. Molecular Cell. PMID 35537449 DOI: 10.1016/j.molcel.2022.04.015 |
0.324 |
|
| 2022 |
Qi W, Rosikiewicz W, Yin Z, Xu B, Jiang H, Wan S, Fan Y, Wu G, Wang L. Genomic profiling identifies genes and pathways dysregulated by HEY1-NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis. The Journal of Pathology. PMID 35342947 DOI: 10.1002/path.5899 |
0.743 |
|
| 2022 |
Wang X, Rosikiewicz W, Sedkov Y, Martinez T, Hansen BS, Schreiner P, Christensen J, Xu B, Pruett-Miller SM, Helin K, Herz HM. PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands. Life Science Alliance. 5. PMID 34667079 DOI: 10.26508/lsa.202101228 |
0.733 |
|
| 2021 |
Li J, Xu B, He M, Zong X, Cunningham T, Sha C, Fan Y, Cross R, Hanna JH, Feng Y. Control of Foxp3 induction and maintenance by sequential histone acetylation and DNA demethylation. Cell Reports. 37: 110124. PMID 34910919 DOI: 10.1016/j.celrep.2021.110124 |
0.316 |
|
| 2021 |
D'Oto A, Fang J, Jin H, Xu B, Singh S, Mullasseril A, Jones V, Abu-Zaid A, von Buttlar X, Cooke B, Hu D, Shohet J, Murphy AJ, Davidoff AM, Yang J. KDM6B promotes activation of the oncogenic CDK4/6-pRB-E2F pathway by maintaining enhancer activity in MYCN-amplified neuroblastoma. Nature Communications. 12: 7204. PMID 34893606 DOI: 10.1038/s41467-021-27502-2 |
0.342 |
|
| 2021 |
Li H, Dong H, Xu B, Xiong QP, Li CT, Yang WQ, Li J, Huang ZX, Zeng QY, Wang ED, Liu RJ. A dual role of human tRNA methyltransferase hTrmt13 in regulating translation and transcription. The Embo Journal. e108544. PMID 34850409 DOI: 10.15252/embj.2021108544 |
0.313 |
|
| 2021 |
Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome Biology. 22: 244. PMID 34429148 DOI: 10.1186/s13059-021-02466-0 |
0.753 |
|
| 2021 |
Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes. Biorxiv : the Preprint Server For Biology. PMID 34075382 DOI: 10.1101/2021.05.14.444026 |
0.736 |
|
| 2020 |
Xu P, Scott DC, Xu B, Yao Y, Feng R, Cheng L, Mayberry K, Bi W, Palmer LE, King MT, Wang H, Li Y, Fan Y, Alpi AF, Li C, et al. FBXO11-Mediated Proteolysis of BAHD1 Relieves PRC2-dependent Transcriptional Repression in Erythropoiesis. Blood. PMID 33156908 DOI: 10.1182/blood.2020007809 |
0.369 |
|
| 2020 |
Zhang H, Zhang Y, Zhou X, Wright S, Hyle J, Zhao L, An J, Zhao X, Shao Y, Xu B, Lee HM, Chen T, Zhou Y, Chen X, Lu R, et al. Functional interrogation of regulome in MLLr leukemia via reporter-based CRISPR/Cas9 screen. Elife. 9. PMID 33001025 DOI: 10.7554/eLife.57858 |
0.325 |
|
| 2020 |
Xu B, Mulvey B, Salie M, Yang X, Matsui Y, Nityanandam A, Fan Y, Peng JC. UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells. Epigenetics & Chromatin. 13: 38. PMID 32977832 DOI: 10.1186/s13072-020-00359-3 |
0.315 |
|
| 2020 |
Evans MK, Matsui Y, Xu B, Willis C, Loome J, Milburn L, Fan Y, Pagala V, Peng JC. Ybx1 fine-tunes PRC2 activities to control embryonic brain development. Nature Communications. 11: 4060. PMID 32792512 DOI: 10.1038/S41467-020-17878-Y |
0.452 |
|
| 2020 |
Li J, Wang YN, Xu BS, Liu YP, Zhou M, Long T, Li H, Dong H, Nie Y, Chen PR, Wang ED, Liu RJ. Intellectual disability-associated gene ftsj1 is responsible for 2'-O-methylation of specific tRNAs. Embo Reports. e50095. PMID 32558197 DOI: 10.15252/Embr.202050095 |
0.355 |
|
| 2020 |
Zeineldin M, Federico S, Chen X, Fan Y, Xu B, Stewart E, Zhou X, Jeon J, Griffiths L, Nguyen R, Norrie J, Easton J, Mulder H, Yergeau D, Liu Y, et al. MYCN amplification and ATRX mutations are incompatible in neuroblastoma. Nature Communications. 11: 913. PMID 32060267 DOI: 10.1038/S41467-020-14682-6 |
0.331 |
|
| 2020 |
Wijaya J, Vo BT, Liu J, Xu B, Wu G, Wang Y, Peng J, Zhang J, Janke LJ, Orr BA, Yu J, Roussel MF, Schuetz JD. An ABC transporter drives medulloblastoma pathogenesis by regulating Sonic Hedgehog signaling. Cancer Research. PMID 31948942 DOI: 10.1158/0008-5472.Can-19-2054 |
0.328 |
|
| 2020 |
Williams J, Xu B, Putnam D, Chen X. Abstract 6576: DNA methylation reveals alternative promoter usage in genes critical to pediatric tumors Cancer Research. 80: 6576-6576. DOI: 10.1158/1538-7445.Am2020-6576 |
0.401 |
|
| 2019 |
Wei J, Long L, Zheng W, Dhungana Y, Lim SA, Guy C, Wang Y, Wang YD, Qian C, Xu B, Kc A, Saravia J, Huang H, Yu J, Doench JG, et al. Targeting REGNASE-1 programs long-lived effector T cells for cancer therapy. Nature. PMID 31827283 DOI: 10.1038/S41586-019-1821-Z |
0.305 |
|
| 2019 |
Norrie JL, Lupo MS, Xu B, Al Diri I, Valentine M, Putnam D, Griffiths L, Zhang J, Johnson D, Easton J, Shao Y, Honnell V, Frase S, Miller S, Stewart V, et al. Nucleome Dynamics during Retinal Development. Neuron. PMID 31493975 DOI: 10.1016/J.Neuron.2019.08.002 |
0.387 |
|
| 2019 |
Tian L, Shao Y, Nance S, Dang J, Xu B, Ma X, Li Y, Ju B, Dong L, Newman S, Zhou X, Schreiner P, Tseng E, Hon T, Ashby M, et al. Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia. Nature Communications. 10: 2789. PMID 31243274 DOI: 10.1038/S41467-019-10637-8 |
0.353 |
|
| 2019 |
Hyle J, Zhang Y, Wright S, Xu B, Shao Y, Easton J, Tian L, Feng R, Xu P, Li C. Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping. Nucleic Acids Research. PMID 31127282 DOI: 10.1093/Nar/Gkz462 |
0.48 |
|
| 2019 |
Silveira AB, Kasper LH, Fan Y, Jin H, Wu G, Shaw TI, Zhu X, Larson JD, Easton J, Shao Y, Yergeau DA, Rosencrance C, Boggs K, Rusch MC, Ding L, ... ... Xu B, et al. H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo. Acta Neuropathologica. PMID 30770999 DOI: 10.1007/S00401-019-01975-4 |
0.361 |
|
| 2019 |
Yang X, Xu B, Mulvey B, Evans M, Jordan S, Wang YD, Pagala V, Peng J, Fan Y, Patel A, Peng JC. Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1. Nature Neuroscience. PMID 30718900 DOI: 10.1038/S41593-018-0328-5 |
0.426 |
|
| 2018 |
Larson JD, Kasper LH, Paugh BS, Jin H, Wu G, Kwon CH, Fan Y, Shaw TI, Silveira AB, Qu C, Xu R, Zhu X, Zhang J, Russell HR, Peters JL, ... ... Xu B, et al. Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression. Cancer Cell. PMID 30595505 DOI: 10.1016/J.Ccell.2018.11.015 |
0.382 |
|
| 2018 |
Lavado A, Park JY, Paré J, Finkelstein D, Pan H, Xu B, Fan Y, Kumar RP, Neale G, Kwak YD, McKinnon PJ, Johnson RL, Cao X. The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number. Developmental Cell. 47: 576-591.e8. PMID 30523785 DOI: 10.1016/J.Devcel.2018.09.021 |
0.431 |
|
| 2018 |
Stewart E, McEvoy J, Wang H, Chen X, Honnell V, Ocarz M, Gordon B, Dapper J, Blankenship K, Yang Y, Li Y, Shaw TI, Cho JH, Wang X, Xu B, et al. Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses. Cancer Cell. PMID 30146332 DOI: 10.1016/J.Ccell.2018.07.012 |
0.351 |
|
| 2018 |
Vo BT, Kwon JA, Li C, Finkelstein D, Xu B, Orr BA, Sherr CJ, Roussel MF. Mouse medulloblastoma driven by CRISPR activation of cellular Myc. Scientific Reports. 8: 8733. PMID 29880921 DOI: 10.1038/S41598-018-24956-1 |
0.382 |
|
| 2018 |
Wang L, Hiler D, Xu B, AlDiri I, Chen X, Zhou X, Griffiths L, Valentine M, Shirinifard A, Sablauer A, Thiagarajan S, Barabas ME, Zhang J, Johnson D, Frase S, et al. Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures. Cell Reports. 22: 2601-2614. PMID 29514090 DOI: 10.1016/J.Celrep.2018.01.075 |
0.325 |
|
| 2018 |
Zeineldin M, Federico S, Chen X, Xu B, Stewart E, Naranjo A, Hogarty MD, Dyer MA. Abstract IA18: MYCN amplification and ATRX mutations are incompatible in neuroblastoma Cancer Research. 78. DOI: 10.1158/1538-7445.Pedca17-Ia18 |
0.303 |
|
| 2018 |
Chang Y, Woessner DW, Lin W, Chen T, Xu B, Fan Y, Tan H, Peng J, Kasper L, Churchman ML, Gerhard DS, Loh ML, Hunger SP, Seth A, Gascoigne K, et al. Abstract IA12: Modeling and targeting CREBBP mutations in relapsed acute lymphoblastic leukemia Cancer Research. 78. DOI: 10.1158/1538-7445.Pedca17-Ia12 |
0.361 |
|
| 2018 |
Tian L, Xu B, Shao Y, Ma X, Li Y, Newman S, Zhou X, Ashby M, Hon T, Clark T, Tseng E, Easton J, Zhang J. Abstract 1485: Allelic specificity of immunoglobulin heavy chain (IGH) translocation in B-cell acute lymphoblastic leukemia (B-ALL) unveiled by long-read sequencing Cancer Research. 78: 1485-1485. DOI: 10.1158/1538-7445.Am2018-1485 |
0.363 |
|
| 2017 |
Zimmerman MW, Liu Y, He S, Durbin AD, Abraham BJ, Easton J, Shao Y, Xu B, Zhu S, Zhang X, Li Z, Weichert-Leahey N, Young RA, Zhang J, Look AT. c-MYC drives a subset of high-risk pediatric neuroblastomas and is activated through mechanisms including enhancer hijacking and focal enhancer amplification. Cancer Discovery. PMID 29284669 DOI: 10.1158/2159-8290.Cd-17-0993 |
0.335 |
|
| 2017 |
Aldiri I, Xu B, Wang L, Chen X, Hiler D, Griffiths L, Valentine M, Shirinifard A, Thiagarajan S, Sablauer A, Barabas ME, Zhang J, Johnson D, Frase S, Zhou X, et al. The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis. Neuron. 94: 550-568.e10. PMID 28472656 DOI: 10.1016/J.Neuron.2017.04.022 |
0.385 |
|
| 2016 |
Zhang J, McCastlain K, Yoshihara H, Xu B, Chang Y, Churchman ML, Wu G, Li Y, Wei L, Iacobucci I, Liu Y, Qu C, Wen J, Edmonson M, Payne-Turner D, et al. Deregulation of DUX4 and ERG in acute lymphoblastic leukemia. Nature Genetics. PMID 27776115 DOI: 10.1038/Ng.3691 |
0.443 |
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| 2016 |
Jones BG, Penkert RR, Xu B, Fan Y, Neale G, Gearhart PJ, Hurwitz JL. Binding of estrogen receptors to switch sites and regulatory elements in the immunoglobulin heavy chain locus of activated B cells suggests a direct influence of estrogen on antibody expression. Molecular Immunology. 77: 97-102. PMID 27494228 DOI: 10.1016/J.Molimm.2016.07.015 |
0.315 |
|
| 2015 |
Aldiri I, Ajioka I, Xu B, Zhang J, Chen X, Benavente C, Finkelstein D, Johnson D, Akiyama J, Pennacchio LA, Dyer MA. Brg1 coordinates multiple processes during retinogenesis and is a tumor suppressor in retinoblastoma. Development (Cambridge, England). 142: 4092-106. PMID 26628093 DOI: 10.1242/Dev.124800 |
0.355 |
|
| 2015 |
Hiler D, Chen X, Hazen J, Kupriyanov S, Carroll PA, Qu C, Xu B, Johnson D, Griffiths L, Frase S, Rodriguez AR, Martin G, Zhang J, Jeon J, Fan Y, et al. Quantification of Retinogenesis in 3D Cultures Reveals Epigenetic Memory and Higher Efficiency in iPSCs Derived from Rod Photoreceptors. Cell Stem Cell. 17: 101-115. PMID 26140606 DOI: 10.1016/J.Stem.2015.05.015 |
0.32 |
|
| 2015 |
Li Z, Dai H, Martos SN, Xu B, Gao Y, Li T, Zhu G, Schones DE, Wang Z. Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells. Genome Biology. 16: 115. PMID 26032981 DOI: 10.1186/S13059-015-0685-2 |
0.678 |
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| 2014 |
Jose CC, Xu B, Jagannathan L, Trac C, Mallela RK, Hattori T, Lai D, Koide S, Schones DE, Cuddapah S. Epigenetic dysregulation by nickel through repressive chromatin domain disruption. Proceedings of the National Academy of Sciences of the United States of America. 111: 14631-6. PMID 25246589 DOI: 10.1073/Pnas.1406923111 |
0.692 |
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| 2013 |
Xu B, Schones DE, Wang Y, Liang H, Li G. A structural-based strategy for recognition of transcription factor binding sites. Plos One. 8: e52460. PMID 23320072 DOI: 10.1371/Journal.Pone.0052460 |
0.711 |
|
| 2013 |
Xu B, Schones DE, Wang Y, Liang H, Li G. Correction: A Structural-Based Strategy for Recognition of Transcription Factor Binding Sites Plos One. 8. DOI: 10.1371/Annotation/0312E1Be-336D-430A-Aa90-101Bbb44F8Db |
0.682 |
|
| 2011 |
Liu RJ, Tan M, Du DH, Xu BS, Eriani G, Wang ED. Peripheral insertion modulates the editing activity of the isolated CP1 domain of leucyl-tRNA synthetase. The Biochemical Journal. 440: 217-27. PMID 21819379 DOI: 10.1042/Bj20111177 |
0.319 |
|
| 2009 |
Xu B, Yang Y, Liang H, Zhou Y. An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles. Proteins. 76: 718-30. PMID 19274740 DOI: 10.1002/Prot.22384 |
0.709 |
|
| 2004 |
Xu B, Huang L, Liang H. Thermodynamic behaviors of polyampholytes at low temperatures. The Journal of Chemical Physics. 121: 7494-500. PMID 15473824 DOI: 10.1063/1.1792191 |
0.467 |
|
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