| Year |
Citation |
Score |
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis S, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Methods and Applications in Fluorescence. PMID 37726007 DOI: 10.1088/2050-6120/acfb58 |
0.786 |
|
| 2023 |
McMahon A, Andrews R, Groves D, Ghani SV, Cordes T, Kapanidis AN, Robb NC. High-throughput super-resolution analysis of influenza virus pleomorphism reveals insights into viral spatial organization. Plos Pathogens. 19: e1011484. PMID 37390113 DOI: 10.1371/journal.ppat.1011484 |
0.559 |
|
| 2023 |
Kümmerlin M, Mazumder A, Kapanidis AN. Bleaching-resistant, Near-continuous Single-molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. e202300175. PMID 37043705 DOI: 10.1002/cphc.202300175 |
0.779 |
|
| 2023 |
Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, ... ... Kapanidis AN, et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods. PMID 36973549 DOI: 10.1038/s41592-023-01807-0 |
0.779 |
|
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis SW, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Arxiv. PMID 36866225 |
0.786 |
|
| 2021 |
Evans GW, Craggs T, Kapanidis AN. The rate-limiting step of DNA synthesis by DNA polymerase occurs in the fingers-closed conformation. Journal of Molecular Biology. 167410. PMID 34929202 DOI: 10.1016/j.jmb.2021.167410 |
0.309 |
|
| 2021 |
Malinen AM, Bakermans J, Aalto-Setälä E, Blessing M, Bauer DLV, Parilova O, Belogurov GA, Dulin D, Kapanidis AN. Real-Time Single-Molecule Studies of RNA Polymerase-Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway. Journal of Molecular Biology. 434: 167383. PMID 34863780 DOI: 10.1016/j.jmb.2021.167383 |
0.756 |
|
| 2021 |
Mazumder A, Ebright RH, Kapanidis AN. Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism. Elife. 10. PMID 34633286 DOI: 10.7554/eLife.70090 |
0.82 |
|
| 2021 |
Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Jung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, ... ... Kapanidis AN, et al. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. Elife. 10. PMID 33779550 DOI: 10.7554/eLife.60416 |
0.775 |
|
| 2021 |
Mazumder A, Wang A, Uhm H, Ebright RH, Kapanidis AN. RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding. Nucleic Acids Research. PMID 33589919 DOI: 10.1093/nar/gkab074 |
0.807 |
|
| 2020 |
Mazumder A, Lin M, Kapanidis AN, Ebright RH. Closing and opening of the RNA polymerase trigger loop. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571927 DOI: 10.1073/Pnas.1920427117 |
0.824 |
|
| 2020 |
Mazumder A, Ebright RH, Kapanidis AN. Single-molecule Analysis Reveals the Mechanism for DNA Opening in Transcription Initiation Biophysical Journal. 118: 29a. DOI: 10.1016/J.Bpj.2019.11.339 |
0.804 |
|
| 2019 |
Gilboa B, Jing B, Cui TJ, Sow M, Plochowietz A, Mazumder A, Kapanidis AN. Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules. Biophysical Journal. PMID 31711608 DOI: 10.1016/J.Bpj.2019.10.033 |
0.772 |
|
| 2019 |
Craggs TD, Sustarsic M, Plochowietz A, Mosayebi M, Kaju H, Cuthbert A, Hohlbein J, Domicevica L, Biggin PC, Doye JPK, Kapanidis AN. Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase. Nucleic Acids Research. PMID 31544938 DOI: 10.1093/Nar/Gkz797 |
0.311 |
|
| 2019 |
Mazumder A, Kapanidis AN. Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms. Journal of Molecular Biology. PMID 31082441 DOI: 10.1016/J.Jmb.2019.04.046 |
0.748 |
|
| 2019 |
Robb NC, Te Velthuis AJW, Fodor E, Kapanidis AN. Real-time analysis of single influenza virus replication complexes reveals large promoter-dependent differences in initiation dynamics. Nucleic Acids Research. PMID 31032520 DOI: 10.1093/nar/gkz313 |
0.328 |
|
| 2018 |
Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Kapanidis AN, et al. Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. PMID 30327572 DOI: 10.1038/S41592-018-0193-X |
0.722 |
|
| 2018 |
Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Kapanidis AN, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/S41592-018-0085-0 |
0.755 |
|
| 2018 |
Duchi D, Mazumder A, Malinen AM, Ebright RH, Kapanidis AN. The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp. Nucleic Acids Research. PMID 29878276 DOI: 10.1093/Nar/Gky482 |
0.805 |
|
| 2018 |
Dulin D, Bauer DLV, Malinen AM, Bakermans JJW, Kaller M, Morichaud Z, Petushkov I, Depken M, Brodolin K, Kulbachinskiy A, Kapanidis AN. Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria. Nature Communications. 9: 1478. PMID 29662062 DOI: 10.1038/S41467-018-03902-9 |
0.706 |
|
| 2018 |
Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, ... ... Kapanidis AN, et al. Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Molecular Cell. PMID 29606590 DOI: 10.1016/J.Molcel.2018.02.026 |
0.78 |
|
| 2018 |
Duchi D, Gryte K, Robb NC, Morichaud Z, Sheppard C, Brodolin K, Wigneshweraraj S, Kapanidis AN. Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes. Nucleic Acids Research. 46: 677-688. PMID 29177430 DOI: 10.1093/nar/gkx1146 |
0.406 |
|
| 2017 |
Garza de Leon F, Sellars L, Stracy M, Busby SJW, Kapanidis AN. Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor. Biophysical Journal. 112: 1316-1327. PMID 28402875 DOI: 10.1016/j.bpj.2017.02.028 |
0.312 |
|
| 2016 |
Plochowietz A, El-Sagheer AH, Brown T, Kapanidis AN. Stable end-sealed DNA as robust nano-rulers for single-molecule fluorescence. Chemical Science. 7: 4418-4422. PMID 30155088 DOI: 10.1039/C6Sc00639F |
0.414 |
|
| 2016 |
Hohlbein J, Kapanidis AN. Probing the Conformational Landscape of DNA Polymerases Using Diffusion-Based Single-Molecule FRET. Methods in Enzymology. 581: 353-378. PMID 27793286 DOI: 10.1016/bs.mie.2016.08.023 |
0.41 |
|
| 2016 |
Robb NC, Te Velthuis AJ, Wieneke R, Tampé R, Cordes T, Fodor E, Kapanidis AN. Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. Nucleic Acids Research. 44: 10304-10315. PMID 27694620 DOI: 10.1093/Nar/Gkw884 |
0.658 |
|
| 2016 |
Duchi D, Bauer DL, Fernandez L, Evans G, Robb N, Hwang LC, Gryte K, Tomescu A, Zawadzki P, Morichaud Z, Brodolin K, Kapanidis AN. RNA Polymerase Pausing during Initial Transcription. Molecular Cell. PMID 27618490 DOI: 10.1016/J.Molcel.2016.08.011 |
0.402 |
|
| 2016 |
Bauer DL, Duchi D, Kapanidis AN. E. Coli RNA Polymerase Pauses during Initial Transcription Biophysical Journal. 110: 21a. DOI: 10.1016/J.Bpj.2015.11.170 |
0.384 |
|
| 2015 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. Corrigendum to "In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair" [FEBS Lett. 588 (19) (2014) 3585-3594]. Febs Letters. 589: 787. PMID 26864684 DOI: 10.1016/j.febslet.2015.01.021 |
0.309 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Alternating Laser Excitation for Solution-Based Single-Molecule FRET. Cold Spring Harbor Protocols. 2015: pdb.top086405. PMID 26527772 DOI: 10.1101/Pdb.Top086405 |
0.792 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Sample Preparation and Data Acquisition for μs-ALEX. Cold Spring Harbor Protocols. 2015: pdb.prot086439. PMID 26527767 DOI: 10.1101/Pdb.Prot086439 |
0.735 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Aligning the μs-ALEX Setup. Cold Spring Harbor Protocols. 2015: pdb.prot086421. PMID 26527766 DOI: 10.1101/Pdb.Prot086421 |
0.759 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Assembling the μs-ALEX Setup. Cold Spring Harbor Protocols. 2015: pdb.prot086413. PMID 26527765 DOI: 10.1101/Pdb.Prot086413 |
0.728 |
|
| 2015 |
Stracy M, Lesterlin C, Garza de Leon F, Uphoff S, Zawadzki P, Kapanidis AN. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid. Proceedings of the National Academy of Sciences of the United States of America. 112: E4390-9. PMID 26224838 DOI: 10.1073/pnas.1507592112 |
0.37 |
|
| 2015 |
Evans GW, Hohlbein J, Craggs T, Aigrain L, Kapanidis AN. Real-time single-molecule studies of the motions of DNA polymerase fingers illuminate DNA synthesis mechanisms. Nucleic Acids Research. 43: 5998-6008. PMID 26013816 DOI: 10.1093/Nar/Gkv547 |
0.366 |
|
| 2015 |
Aigrain L, Sustarsic M, Crawford R, Plochowietz A, Kapanidis AN. Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation. Journal of Visualized Experiments : Jove. PMID 25741968 DOI: 10.3791/52208 |
0.357 |
|
| 2015 |
Plochowietz A, Llumigusin DD, Zawadzki P, El-Sagheer AH, Brown T, Kapanidis AN. Real-Time Transcription Initiation by E. coli RNA Polymerase in vitro and in vivo Biophysical Journal. 108: 115a. DOI: 10.1016/J.Bpj.2014.11.646 |
0.402 |
|
| 2015 |
Sustarsic M, Craggs T, Hohlbein J, Cuthbert A, Taylor N, Kaju H, Mosayebi M, Doye J, Kapanidis AN. Single-Molecule FRET for Dynamic Structural Biology: DNA Polymerase i Structure and Mechanism with Angstrom Precision Biophysical Journal. 108: 14a. DOI: 10.1016/J.Bpj.2014.11.103 |
0.338 |
|
| 2014 |
May PF, Pinkney JN, Zawadzki P, Evans GW, Sherratt DJ, Kapanidis AN. Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging. Biophysical Journal. 107: 1205-16. PMID 25185556 DOI: 10.1016/j.bpj.2014.07.024 |
0.395 |
|
| 2014 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair. Febs Letters. 588: 3585-94. PMID 24859634 DOI: 10.1016/j.febslet.2014.05.026 |
0.381 |
|
| 2014 |
Plochowietz A, Crawford R, Kapanidis AN. Characterization of organic fluorophores for in vivo FRET studies based on electroporated molecules. Physical Chemistry Chemical Physics : Pccp. 16: 12688-94. PMID 24837080 DOI: 10.1039/c4cp00995a |
0.375 |
|
| 2014 |
Sustarsic M, Plochowietz A, Aigrain L, Yuzenkova Y, Zenkin N, Kapanidis A. Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation. Histochemistry and Cell Biology. 142: 113-24. PMID 24696085 DOI: 10.1007/S00418-014-1213-2 |
0.401 |
|
| 2014 |
Uphoff S, Sherratt DJ, Kapanidis AN. Visualizing protein-DNA interactions in live bacterial cells using photoactivated single-molecule tracking. Journal of Visualized Experiments : Jove. PMID 24638084 DOI: 10.3791/51177 |
0.323 |
|
| 2014 |
Kapanidis A. New FRET Methods for Studying Processing of Nucleic Acids by Protein Machines Biophysical Journal. 106: 44a. DOI: 10.1016/J.Bpj.2013.11.325 |
0.512 |
|
| 2014 |
Sustarsic M, Aigrain L, Plochowietz A, Craggs T, Kapanidis A. Optimized Internalization of Fluorescently Labeled Biomolecules into Live Bacteria Biophysical Journal. 106: 458a-459a. DOI: 10.1016/J.Bpj.2013.11.2600 |
0.421 |
|
| 2014 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis A. Super-Resolution Imaging of Transcription in Live Bacterial Cells Biophysical Journal. 106: 373a. DOI: 10.1016/J.Bpj.2013.11.2112 |
0.454 |
|
| 2014 |
Craggs TD, Sustarsic M, Hohlbein J, Cuthbert A, Taylor N, Evans G, Kapanidis AN. A Novel FRET-Based Structure of DNA Polymerase Complexed with Kinked Gapped-DNA Biophysical Journal. 106: 274a. DOI: 10.1016/J.Bpj.2013.11.1605 |
0.324 |
|
| 2014 |
Plochowietz A, Crawford R, Aigrain L, Sustarsic M, Kapanidis AN. Combining Accurate FRET and Tracking of Single Protein and DNA Molecules in Live Bacteria Biophysical Journal. 106: 223a-224a. DOI: 10.1016/j.bpj.2013.11.1308 |
0.316 |
|
| 2013 |
Crawford R, Torella JP, Aigrain L, Plochowietz A, Gryte K, Uphoff S, Kapanidis AN. Long-lived intracellular single-molecule fluorescence using electroporated molecules. Biophysical Journal. 105: 2439-50. PMID 24314075 DOI: 10.1016/j.bpj.2013.09.057 |
0.397 |
|
| 2013 |
Hohlbein J, Aigrain L, Craggs TD, Bermek O, Potapova O, Shoolizadeh P, Grindley ND, Joyce CM, Kapanidis AN. Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion. Nature Communications. 4: 2131. PMID 23831915 DOI: 10.1038/Ncomms3131 |
0.314 |
|
| 2013 |
Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: Implications for transcription start-site selection Journal of Molecular Biology. 425: 875-885. PMID 23274143 DOI: 10.1016/J.Jmb.2012.12.015 |
0.781 |
|
| 2013 |
Crawford R, Aigrain L, Plochowietz A, Torella JP, Uphoff S, Kapanidis AN. Internalization of Fluorescent Biomolecules for Long-Lived Single-Molecule Observation in Living Bacteria Biophysical Journal. 104: 176a. DOI: 10.1016/j.bpj.2012.11.990 |
0.314 |
|
| 2013 |
Tomescu AI, Robb NC, Hengrung N, Fodor E, Kapanidis AN. Characterizing Influenza a RNA Polymerase - Promoter Interaction using Ensemble Fluorescence Spectroscopy Biophysical Journal. 104: 584a. DOI: 10.1016/j.bpj.2012.11.3247 |
0.35 |
|
| 2013 |
Aigrain L, Crawford R, Torella JP, Plochowietz A, Sustarsic M, Kapanidis AN. Single-Molecule Fluorescence and FRET Measurements on Internalized Proteins in Living Bacteria Biophysical Journal. 104: 574a. DOI: 10.1016/j.bpj.2012.11.3188 |
0.326 |
|
| 2012 |
Craggs TD, Kapanidis AN. Six steps closer to FRET-driven structural biology Nature Methods. 9: 1157-1159. PMID 23223168 DOI: 10.1038/Nmeth.2257 |
0.307 |
|
| 2012 |
Pinkney JN, Zawadzki P, Mazuryk J, Arciszewska LK, Sherratt DJ, Kapanidis AN. Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence. Proceedings of the National Academy of Sciences of the United States of America. 109: 20871-6. PMID 23184986 DOI: 10.1073/pnas.1211922109 |
0.335 |
|
| 2012 |
Le Reste L, Hohlbein J, Gryte K, Kapanidis AN. Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET. Biophysical Journal. 102: 2658-68. PMID 22713582 DOI: 10.1016/j.bpj.2012.04.028 |
0.41 |
|
| 2012 |
Duchi Llumigusin D, Robb N, Gryte K, Kapanidis AN. Single-Molecule Studies of Transcription Initiation using a Vesicle Approach Biophysical Journal. 102: 485a. DOI: 10.1016/j.bpj.2011.11.2661 |
0.313 |
|
| 2012 |
Periz J, Celma C, Pinkney J, Roy P, Kapanidis A. Detection of Specific mRNA Synthesis in Rotavirus using Single Molecule Hybridization Biophysical Journal. 102: 287a. DOI: 10.1016/J.Bpj.2011.11.1587 |
0.505 |
|
| 2012 |
Pinkney J, Zawadzki P, Sherratt DJ, Kapanidis AN. Single-Molecule Fluorescence Studies of Site-Specific DNA Recombination Biophysical Journal. 102: 283a. DOI: 10.1016/j.bpj.2011.11.1563 |
0.36 |
|
| 2011 |
Torella JP, Holden SJ, Santoso Y, Hohlbein J, Kapanidis AN. Identifying molecular dynamics in single-molecule fret experiments with burst variance analysis Biophysical Journal. 100: 1568-1577. PMID 21402040 DOI: 10.1016/j.bpj.2011.01.066 |
0.338 |
|
| 2011 |
Gryte K, Cordes T, Tomescu A, Hwang L, Kapanidis A. Real-Time Initial Transcription by a Multisubunit RNA Polymerase Biophysical Journal. 100: 65a. DOI: 10.1016/J.Bpj.2010.12.554 |
0.717 |
|
| 2011 |
Hohlbein J, Joyce CM, Shoolizadeh P, Evans G, Potapova O, Bermek O, Duchillumigusin D, Grindley ND, Kapanidis AN. Novel Conformational States in Mutator DNA Polymerases Observed Using Single-Molecule FRET Biophysical Journal. 100: 240a-241a. DOI: 10.1016/J.Bpj.2010.12.1532 |
0.355 |
|
| 2010 |
Cordes T, Santoso Y, Tomescu AI, Gryte K, Hwang LC, Camará B, Wigneshweraraj S, Kapanidis AN. Sensing DNA opening in transcription using quenchable Förster resonance energy transfer Biochemistry. 49: 9171-9180. PMID 20818825 DOI: 10.1021/Bi101184G |
0.711 |
|
| 2010 |
Uphoff S, Holden SJ, Le Reste L, Periz J, Van De Linde S, Heilemann M, Kapanidis AN. Monitoring multiple distances within a single molecule using switchable FRET Nature Methods. 7: 831-836. PMID 20818380 DOI: 10.1038/nmeth.1502 |
0.415 |
|
| 2010 |
Hohlbein J, Gryte K, Heilemann M, Kapanidis AN. Surfing on a new wave of single-molecule fluorescence methods. Physical Biology. 7: 031001. PMID 20686191 DOI: 10.1088/1478-3975/7/3/031001 |
0.367 |
|
| 2010 |
Santoso Y, Torella JP, Kapanidis AN. Characterizing single-molecule FRET dynamics with probability distribution analysis. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 11: 2209-19. PMID 20575136 DOI: 10.1002/cphc.201000129 |
0.308 |
|
| 2010 |
Santoso Y, Joyce CM, Potapova O, Le Reste L, Hohlbein J, Torella JP, Grindley ND, Kapanidis AN. Conformational transitions in DNA polymerase I revealed by single-molecule FRET. Proceedings of the National Academy of Sciences of the United States of America. 107: 715-20. PMID 20080740 DOI: 10.1073/Pnas.0910909107 |
0.405 |
|
| 2010 |
Lymperopoulos K, Crawford R, Torella JP, Heilemann M, Hwang LC, Holden SJ, Kapanidis AN. Single-molecule DNA biosensors for protein and ligand detection Angewandte Chemie - International Edition. 49: 1316-1320. PMID 20077444 DOI: 10.1002/anie.200904597 |
0.372 |
|
| 2010 |
Endesfelder U, Finan K, Cook P, Kapanidis A, Heilemann M. Quantitative Studies of Transcription in E.coli With Subdiffraction Fluorescence Microscopy Biophysical Journal. 98: 69a-70a. DOI: 10.1016/J.Bpj.2009.12.395 |
0.449 |
|
| 2010 |
Hohlbein J, Le Reste L, Potapova O, Joyce C, El-Sagheer AH, Brown T, Kapanidis AN. Towards Dark Quencher Based Real Time DNA Sequencing Biophysical Journal. 98: 611a-612a. DOI: 10.1016/J.Bpj.2009.12.3336 |
0.406 |
|
| 2010 |
Crawford R, Lymperopoulos K, Torella JP, Heilemann M, Hwang LC, Holden SJ, Kapanidis A. Single-Molecule DNA Biosensors for Quantitative Transcription Factor Detection Biophysical Journal. 98: 611a. DOI: 10.1016/J.Bpj.2009.12.3333 |
0.455 |
|
| 2010 |
Santoso Y, Joyce CM, Potapova O, Le Reste L, Hohlbein J, Torella JP, Grindley ND, Kapanidis AN. Conformational Changes in DNA Polymerase I Revealed by Single-Molecule FRET Biophysical Journal. 98: 436a-437a. DOI: 10.1016/J.Bpj.2009.12.2370 |
0.399 |
|
| 2009 |
Santoso Y, Kapanidis AN. Probing biomolecular structures and dynamics of single molecules using in-gel alternating-laser excitation. Analytical Chemistry. 81: 9561-70. PMID 19863108 DOI: 10.1021/ac901423e |
0.37 |
|
| 2009 |
Heilemann M, Hwang LC, Lymperopoulos K, Kapanidis AN. Single-molecule FRET analysis of protein-DNA complexes. Methods in Molecular Biology (Clifton, N.J.). 543: 503-21. PMID 19378183 DOI: 10.1007/978-1-60327-015-1_29 |
0.435 |
|
| 2009 |
Kapanidis AN, Strick T. Biology, one molecule at a time. Trends in Biochemical Sciences. 34: 234-43. PMID 19362843 DOI: 10.1016/j.tibs.2009.01.008 |
0.306 |
|
| 2009 |
Ebright R, Weiss S, Chakraborty A, Wang D, Korlann Y, Kapanidis A, Margeat E. Single-Molecule Analysis of Transcription Biophysical Journal. 96: 202a. DOI: 10.1016/J.Bpj.2008.12.1085 |
0.812 |
|
| 2008 |
Santoso Y, Hwang LC, Le Reste L, Kapanidis AN. Red light, green light: probing single molecules using alternating-laser excitation. Biochemical Society Transactions. 36: 738-44. PMID 18631150 DOI: 10.1042/BST0360738 |
0.38 |
|
| 2007 |
Doose S, Heilemann M, Michalet X, Weiss S, Kapanidis AN. Periodic acceptor excitation spectroscopy of single molecules. European Biophysics Journal : Ebj. 36: 669-74. PMID 17279362 DOI: 10.1007/S00249-007-0133-7 |
0.523 |
|
| 2007 |
Lee NK, Kapanidis AN, Koh HR, Korlann Y, Ho SO, Kim Y, Gassman N, Kim SK, Weiss S. Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances. Biophysical Journal. 92: 303-12. PMID 17040983 DOI: 10.1529/Biophysj.106.093211 |
0.807 |
|
| 2006 |
Kapanidis AN, Margeat E, Ho SO, Kortkhonjia E, Weiss S, Ebright RH. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science (New York, N.Y.). 314: 1144-7. PMID 17110578 DOI: 10.1126/Science.1131399 |
0.805 |
|
| 2006 |
Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophysical Journal. 90: 1419-31. PMID 16299085 DOI: 10.1529/Biophysj.105.069252 |
0.851 |
|
| 2005 |
Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis. Molecular Cell. 20: 347-56. PMID 16285917 DOI: 10.1016/J.Molcel.2005.10.012 |
0.776 |
|
| 2005 |
Kapanidis AN, Laurence TA, Lee NK, Margeat E, Kong X, Weiss S. Alternating-laser excitation of single molecules. Accounts of Chemical Research. 38: 523-33. PMID 16028886 DOI: 10.1021/Ar0401348 |
0.694 |
|
| 2005 |
Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophysical Journal. 88: 2939-53. PMID 15653725 DOI: 10.1529/Biophysj.104.054114 |
0.806 |
|
| 2004 |
Kapanidis AN, Lee NK, Laurence TA, Doose S, Margeat E, Weiss S. Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proceedings of the National Academy of Sciences of the United States of America. 101: 8936-41. PMID 15175430 DOI: 10.1073/Pnas.0401690101 |
0.587 |
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| 2004 |
Laurence TA, Kapanidis AN, Kong X, Chemla DS, Weiss S. Photon arrival-time interval distribution (PAID): A novel tool for analyzing molecular interactions Journal of Physical Chemistry B. 108: 3051-3067. |
0.607 |
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| 2003 |
Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods in Enzymology. 371: 144-59. PMID 14712697 DOI: 10.1016/S0076-6879(03)71010-6 |
0.826 |
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| 2003 |
Michalet X, Kapanidis AN, Laurence T, Pinaud F, Doose S, Pflughoefft M, Weiss S. The power and prospects of fluorescence microscopies and spectroscopies. Annual Review of Biophysics and Biomolecular Structure. 32: 161-82. PMID 12598370 DOI: 10.1146/Annurev.Biophys.32.110601.142525 |
0.704 |
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| 2002 |
Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 108: 599-614. PMID 11893332 DOI: 10.1016/S0092-8674(02)00667-0 |
0.805 |
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| 2002 |
Kapanidis AN, Weiss S. Fluorescent probes and bioconjugation chemistries for single-molecule fluorescence analysis of biomolecules The Journal of Chemical Physics. 117: 10953-10964. DOI: 10.1063/1.1521158 |
0.537 |
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| 2001 |
Kapanidis AN, Ebright YW, Ebright RH. Site-specific incorporation of fluorescent probes into protein: Hexahistidine-tag-mediated fluorescent labeling with (Ni2+:Nitrilotriacetic Acid)n - Fluorochrome conjugates [20] Journal of the American Chemical Society. 123: 12123-12125. PMID 11724636 DOI: 10.1021/Ja017074A |
0.547 |
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| 2001 |
Kapanidis AN, Ebright YW, Ludescher RD, Chan S, Ebright RH. Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution Journal of Molecular Biology. 312: 453-468. PMID 11563909 DOI: 10.1006/Jmbi.2001.4976 |
0.565 |
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| 2001 |
Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 106: 453-63. PMID 11525731 DOI: 10.1016/S0092-8674(01)00464-0 |
0.813 |
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| 1998 |
Lagrange T, Kapanidis AN, Tang H, Reinberg D, Ebright RH. New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB Genes and Development. 12: 34-44. PMID 9420329 DOI: 10.1101/Gad.12.1.34 |
0.616 |
|
| 1996 |
Kapanidis AN, Lee T. Novel Method for the Production of Color-Compatible Ferrous Sulfate-Fortified Simulated Rice through Extrusion Journal of Agricultural and Food Chemistry. 44: 522-525. DOI: 10.1021/Jf950368T |
0.55 |
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| 1995 |
KAPANIDIS AN, LEE T. Heating Cruciferous Vegetables Increases in Vitro Dialyzability of Intrinsic and Extrinsic Iron Journal of Food Science. 60: 128-131. DOI: 10.1111/J.1365-2621.1995.Tb05621.X |
0.56 |
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| Low-probability matches (unlikely to be authored by this person) |
| 2010 |
Holden SJ, Uphoff S, Hohlbein J, Yadin D, Le Reste L, Britton OJ, Kapanidis AN. Defining the limits of single-molecule FRET resolution in TIRF microscopy Biophysical Journal. 99: 3102-3111. PMID 21044609 DOI: 10.1016/j.bpj.2010.09.005 |
0.299 |
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| 2015 |
Sustarsic M, Kapanidis AN. Taking the ruler to the jungle: single-molecule FRET for understanding biomolecular structure and dynamics in live cells. Current Opinion in Structural Biology. 34: 52-9. PMID 26295172 DOI: 10.1016/j.sbi.2015.07.001 |
0.298 |
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| 2013 |
Periz J, Celma C, Jing B, Pinkney JN, Roy P, Kapanidis AN. Rotavirus mRNAS are released by transcript-specific channels in the double-layered viral capsid. Proceedings of the National Academy of Sciences of the United States of America. 110: 12042-7. PMID 23818620 DOI: 10.1073/pnas.1220345110 |
0.297 |
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| 2017 |
Lamberte LE, Baniulyte G, Singh SS, Stringer AM, Bonocora RP, Stracy M, Kapanidis AN, Wade JT, Grainger DC. Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase. Nature Microbiology. 2: 16249. PMID 28067866 DOI: 10.1038/nmicrobiol.2016.249 |
0.293 |
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| 2016 |
Te Velthuis AJ, Robb NC, Kapanidis AN, Fodor E. The role of the priming loop in RNA synthesis. Nature Microbiology. 1. PMID 27274864 DOI: 10.1038/nmicrobiol.2016.29 |
0.293 |
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| 2008 |
Goodman RP, Heilemann M, Doose S, Erben CM, Kapanidis AN, Turberfield AJ. Reconfigurable, braced, three-dimensional DNA nanostructures. Nature Nanotechnology. 3: 93-6. PMID 18654468 DOI: 10.1038/nnano.2008.3 |
0.293 |
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| 2014 |
Tomescu AI, Robb NC, Hengrung N, Fodor E, Kapanidis AN. Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter. Proceedings of the National Academy of Sciences of the United States of America. 111: E3335-42. PMID 25071209 DOI: 10.1073/pnas.1406056111 |
0.292 |
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| 2017 |
Stracy M, Kapanidis AN. Single-molecule and super-resolution imaging of transcription in living bacteria. Methods (San Diego, Calif.). 120: 103-114. PMID 28414097 DOI: 10.1016/j.ymeth.2017.04.001 |
0.292 |
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| 2013 |
Uphoff S, Reyes-Lamothe R, Garza de Leon F, Sherratt DJ, Kapanidis AN. Single-molecule DNA repair in live bacteria. Proceedings of the National Academy of Sciences of the United States of America. 110: 8063-8. PMID 23630273 DOI: 10.1073/pnas.1301804110 |
0.289 |
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| 2013 |
Crawford R, Erben CM, Periz J, Hall LM, Brown T, Turberfield AJ, Kapanidis AN. Non-covalent single transcription factor encapsulation inside a DNA cage. Angewandte Chemie (International Ed. in English). 52: 2284-8. PMID 23325751 DOI: 10.1002/Anie.201207914 |
0.289 |
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| 2011 |
Uphoff S, Gryte K, Evans G, Kapanidis AN. Improved temporal resolution and linked hidden Markov modeling for switchable single-molecule FRET. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 12: 571-9. PMID 21280168 DOI: 10.1002/cphc.201000834 |
0.286 |
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| 2018 |
Andrews R, Steuer H, Shivalingam A, El-Sagheer AH, Brown T, Kapanidis AN. Short-Read Single-Molecule DNA Sequencing for Highly Parallel Analysis of Protein-DNA Interactions Biophysical Journal. 114: 92a. DOI: 10.1016/J.Bpj.2017.11.547 |
0.279 |
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| 2016 |
Te Velthuis AJ, Robb NC, Kapanidis AN, Fodor E. The role of the priming loop in influenza A virus RNA synthesis. Nature Microbiology. 1: 16029. PMID 27572643 DOI: 10.1038/nmicrobiol.2016.29 |
0.276 |
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| 2016 |
Meli M, Sustarsic M, Craggs TD, Kapanidis AN, Colombo G. DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations. Frontiers in Molecular Biosciences. 3: 20. PMID 27303671 DOI: 10.3389/Fmolb.2016.00020 |
0.275 |
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| 2012 |
Crawford R, Kelly DJ, Kapanidis AN. A protein biosensor that relies on bending of single DNA molecules. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 13: 918-22. PMID 22368093 DOI: 10.1002/cphc.201100881 |
0.274 |
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| 2015 |
May PF, Zawadzki P, Sherratt DJ, Kapanidis AN, Arciszewska LK. Assembly, translocation, and activation of XerCD-dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion. Proceedings of the National Academy of Sciences of the United States of America. 112: E5133-41. PMID 26324908 DOI: 10.1073/pnas.1510814112 |
0.27 |
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| 2014 |
Uphoff S, Kapanidis AN. Studying the organization of DNA repair by single-cell and single-molecule imaging. Dna Repair. 20: 32-40. PMID 24629485 DOI: 10.1016/j.dnarep.2014.02.015 |
0.266 |
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| 2012 |
Crawford R, Torella JP, Kapanidis AN. Single-Molecule FRET in Living Bacteria Biophysical Journal. 102: 234a. DOI: 10.1016/j.bpj.2011.11.1288 |
0.263 |
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| 2016 |
Stracy M, Lesterlin C, Uphoff S, Zawadzki P, Kapanidis AN. Single-Molecule Imaging of Transcription, Chromosome Organization, and DNA Repair in Live Bacteria Biophysical Journal. 110: 20a-21a. DOI: 10.1016/j.bpj.2015.11.169 |
0.262 |
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| 1998 |
Berk AJ, Boyer TG, Kapanidis AN, Ebrighit RH, Kobayashi NN, Horn PJ, Sullivan SM, Koop R, Surby MA, Triezenberg SJ. Mechanisms of viral activators Cold Spring Harbor Symposia On Quantitative Biology. 63: 243-252. PMID 10384288 DOI: 10.1101/Sqb.1998.63.243 |
0.258 |
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| 2016 |
Plochowietz A, Farrell I, Smilansky Z, Cooperman BS, Kapanidis AN. In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria. Nucleic Acids Research. PMID 27625389 DOI: 10.1093/Nar/Gkw787 |
0.256 |
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| 2018 |
Kapanidis AN, Uphoff S, Stracy M. Understanding Protein Mobility in Bacteria by Tracking Single Molecules. Journal of Molecular Biology. 430: 4443-4455. PMID 29753778 DOI: 10.1016/j.jmb.2018.05.002 |
0.256 |
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| 2018 |
Kapanidis AN, Lepore A, El Karoui M. Rediscovering Bacteria through Single-Molecule Imaging in Living Cells. Biophysical Journal. 115: 190-202. PMID 29680157 DOI: 10.1016/j.bpj.2018.03.028 |
0.252 |
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| 2016 |
Stracy M, Jaciuk M, Uphoff S, Kapanidis AN, Nowotny M, Sherratt DJ, Zawadzki P. Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli. Nature Communications. 7: 12568. PMID 27562541 DOI: 10.1038/ncomms12568 |
0.251 |
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| 2010 |
Torella JP, Santoso Y, Holden SJ, Hohlbein J, Joyce CM, Potapova O, Grindley ND, Kapanidis AN. Separating Static and Dynamic Heterogeneity in Single-Molecule FRET Experiments with Burst Variance Analysis (BVA) Biophysical Journal. 98: 591a. DOI: 10.1016/J.Bpj.2009.12.3213 |
0.249 |
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| 2015 |
Zawadzki P, Stracy M, Ginda K, Zawadzka K, Lesterlin C, Kapanidis AN, Sherratt DJ. The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF. Cell Reports. 13: 2587-96. PMID 26686641 DOI: 10.1016/j.celrep.2015.11.034 |
0.247 |
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| 2010 |
Uphoff S, Holden S, Le Reste L, van de Linde S, Heilemann M, Kapanidis AN. Measuring Multiple Distances within a Single Molecule using Switchable FRET Biophysical Journal. 98: 623a. DOI: 10.1016/J.BPJ.2009.12.3410 |
0.246 |
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| 2019 |
Klein HL, Ang KKH, Arkin MR, Beckwitt EC, Chang YH, Fan J, Kwon Y, Morten MJ, Mukherjee S, Pambos OJ, El Sayyed H, Thrall ES, Vieira-da-Rocha JP, Wang Q, Wang S, ... ... Kapanidis AN, et al. Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes. Microbial Cell (Graz, Austria). 6: 65-101. PMID 30652106 DOI: 10.15698/Mic2019.01.665 |
0.242 |
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| 2016 |
Sadler EE, Kapanidis AN, Tucker SJ. Solution-Based Single-Molecule FRET Studies of K(+) Channel Gating in a Lipid Bilayer. Biophysical Journal. 110: 2663-70. PMID 27332124 DOI: 10.1016/J.Bpj.2016.05.020 |
0.24 |
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| 2021 |
Stracy M, Schweizer J, Sherratt DJ, Kapanidis AN, Uphoff S, Lesterlin C. Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins. Molecular Cell. PMID 33621478 DOI: 10.1016/j.molcel.2021.01.039 |
0.239 |
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| 2007 |
Harding PJ, Attrill H, Ross S, Koeppe JR, Kapanidis AN, Watts A. Neurotensin receptor type 1: Escherichia coli expression, purification, characterization and biophysical study. Biochemical Society Transactions. 35: 760-3. PMID 17635142 DOI: 10.1042/BST0350760 |
0.234 |
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| 2015 |
Stracy M, Lesterlin C, De Leon FG, Uphoff S, Zawadzki P, Kapanidis AN, Ha T. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid Proceedings of the National Academy of Sciences of the United States of America. 112: E4390-E4399. DOI: 10.1073/pnas.1507592112 |
0.234 |
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| 2018 |
Gilboa B, Jing B, Sow M, Ju Cui T, Plochowietz A, Kapanidis AN. Wide-Field Monitoring of Single Fluorescent Molecules and Nanoparticles without Immobilization Biophysical Journal. 114: 169a. DOI: 10.1016/j.bpj.2017.11.945 |
0.234 |
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| 2009 |
Goodman RP, Erben CM, Malo J, Ho WM, McKee ML, Kapanidis AN, Turberfield AJ. A facile method for reversibly linking a recombinant protein to DNA. Chembiochem : a European Journal of Chemical Biology. 10: 1551-7. PMID 19449345 DOI: 10.1002/cbic.200900165 |
0.231 |
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| 2012 |
Finan KR, Heilemann M, Endesfelder U, Holden S, Cook PR, Kapanidis A. Super-Resolution Fluorescence Microscopy of Transcription Sites in E. Coli Biophysical Journal. 102: 229a. DOI: 10.1016/J.Bpj.2011.11.1256 |
0.229 |
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| 2020 |
Sow M, Steuer H, Adekanye S, Ginés L, Mandal S, Gilboa B, Williams OA, Smith JM, Kapanidis AN. High-throughput nitrogen-vacancy center imaging for nanodiamond photophysical characterization and pH nanosensing. Nanoscale. PMID 33103692 DOI: 10.1039/d0nr05931e |
0.226 |
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| 2013 |
Endesfelder U, Finan K, Holden SJ, Cook PR, Kapanidis AN, Heilemann M. Multiscale spatial organization of RNA polymerase in escherichia coli Biophysical Journal. 105: 172-181. PMID 23823236 DOI: 10.1016/J.Bpj.2013.05.048 |
0.222 |
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| 2023 |
Groves D, Hepp C, Kapanidis AN, Robb NC. Single-molecule FRETing for virology: 20 years of insight into protein structure and dynamics. Quarterly Reviews of Biophysics. 1-27. PMID 37198943 DOI: 10.1017/S0033583523000021 |
0.222 |
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| 2012 |
Gryte K, Wardrope A, Evans G, Uphoff S, Le Reste L, Kapanidis AN. Regime-Changing Hidden Markov Modeling and Statistical Analysis for Complex Single-Molecule Time Series Biophysical Journal. 102: 595a-596a. DOI: 10.1016/j.bpj.2011.11.3244 |
0.222 |
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| 2012 |
Finan K, Torella JP, Kapanidis AN, Cook PR. T7 RNA polymerase functions in vitro without clustering. Plos One. 7: e40207. PMID 22768341 DOI: 10.1371/Journal.Pone.0040207 |
0.219 |
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| 2009 |
Holden SJ, Kapanidis AN. Alternating-Laser Excitation and Pulsed-Interleaved Excitation of Single Molecules Single Particle Tracking and Single Molecule Energy Transfer. 131-162. DOI: 10.1002/9783527628360.ch6 |
0.204 |
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| 2023 |
Hickman SJ, Miller HL, Bukys A, Kapanidis AN, Berks BC. Aberrant topologies of bacterial membrane proteins revealed by high sensitivity fluorescence labelling. Journal of Molecular Biology. 168368. PMID 37977298 DOI: 10.1016/j.jmb.2023.168368 |
0.204 |
|
| 2013 |
Zawadzki P, May PF, Baker RA, Pinkney JN, Kapanidis AN, Sherratt DJ, Arciszewska LK. Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes. Proceedings of the National Academy of Sciences of the United States of America. 110: 17302-7. PMID 24101525 DOI: 10.1073/pnas.1311065110 |
0.198 |
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| 2023 |
Fan J, El Sayyed H, Pambos OJ, Stracy M, Kyropoulos J, Kapanidis AN. RNA polymerase redistribution supports growth in E. coli strains with a minimal number of rRNA operons. Nucleic Acids Research. PMID 37351576 DOI: 10.1093/nar/gkad511 |
0.192 |
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| 2010 |
Lymperopoulos K, Crawford R, Torella J, Heilemann M, Hwang L, Holden S, Kapanidis A. Einzelmolekül-DNA-Biosensoren zur Detektion von Proteinen und Liganden Angewandte Chemie. 122: 1338-1342. DOI: 10.1002/ANGE.200904597 |
0.191 |
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| 2019 |
Robb NC, Taylor JM, Kent A, Pambos OJ, Gilboa B, Evangelidou M, Mentis AA, Kapanidis AN. Rapid functionalisation and detection of viruses via a novel Ca-mediated virus-DNA interaction. Scientific Reports. 9: 16219. PMID 31700064 DOI: 10.1038/s41598-019-52759-5 |
0.177 |
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| 2018 |
Robb NC, te Velthuis AJ, Fodor E, Kapanidis AN. Single-Molecule Analysis of the Influenza Virus Replication Initiation Mechanism Biophysical Journal. 114: 246a. DOI: 10.1016/j.bpj.2017.11.1370 |
0.161 |
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| 2015 |
May PF, Zawadzki P, Arciszewska LK, Sherratt D, Kapanidis AN. Studies of the FtsK DNA Translocase using Two-Color Tethered Fluorophore Motion Biophysical Journal. 108: 67a. DOI: 10.1016/j.bpj.2014.11.399 |
0.158 |
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| 2021 |
Hepp C, Shiaelis N, Robb NC, Vaughan A, Matthews PC, Stoesser N, Crook D, Kapanidis AN. Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA. Scientific Reports. 11: 19579. PMID 34599242 DOI: 10.1038/s41598-021-98972-z |
0.154 |
|
| 2010 |
Holden SJ, Uphoff S, Yadin D, Hohlbein J, Le Reste L, Britton OJ, Kapanidis AN. TIRF-Based FRET with One Base-Pair Resolution Biophysical Journal. 98: 413a. DOI: 10.1016/j.bpj.2009.12.2230 |
0.141 |
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| 2009 |
Carstairs HM, Lymperopoulos K, Kapanidis AN, Bath J, Turberfield AJ. DNA monofunctionalization of quantum dots. Chembiochem : a European Journal of Chemical Biology. 10: 1781-3. PMID 19554595 DOI: 10.1002/cbic.200900300 |
0.12 |
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| 2021 |
Afanzar O, Di Paolo D, Eisenstein M, Levi K, Plochowietz A, Kapanidis AN, Berry RM, Eisenbach M. The switching mechanism of the bacterial rotary motor combines tight regulation with inherent flexibility. The Embo Journal. e104683. PMID 33620739 DOI: 10.15252/embj.2020104683 |
0.12 |
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| 2022 |
Shiaelis N, Tometzki A, Peto L, McMahon A, Hepp C, Bickerton E, Favard C, Muriaux D, Andersson M, Oakley S, Vaughan A, Matthews PC, Stoesser N, Crook DW, Kapanidis AN, et al. Virus Detection and Identification in Minutes Using Single-Particle Imaging and Deep Learning. Acs Nano. PMID 36541630 DOI: 10.1021/acsnano.2c10159 |
0.115 |
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| 2015 |
Plochowietz A, Kapanidis AN. Single in the (Cell) City: a protein-folding story. Nature Methods. 12: 715-6. PMID 26226360 DOI: 10.1038/nmeth.3491 |
0.111 |
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| 2023 |
Zagajewski A, Turner P, Feehily C, El Sayyed H, Andersson M, Barrett L, Oakley S, Stracy M, Crook D, Nellåker C, Stoesser N, Kapanidis AN. Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli. Communications Biology. 6: 1164. PMID 37964031 DOI: 10.1038/s42003-023-05524-4 |
0.101 |
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| 2019 |
Sow M, Steuer H, Gilboa B, Gines L, Mandal S, Adekanye S, Smith JM, Williams OA, Kapanidis AN. Single Nitrogen-Vacancy Imaging in Nanodiamonds for Multimodal Sensing Biophysical Journal. 116: 174a. DOI: 10.1016/j.bpj.2018.11.966 |
0.087 |
|
| 2015 |
McGinn S, Bauer D, Brefort T, Dong L, El-Sagheer A, Elsharawy A, Evans G, Falk-Sörqvist E, Forster M, Fredriksson S, Freeman P, Freitag C, Fritzsche J, Gibson S, Gullberg M, ... ... Kapanidis AN, et al. New technologies for DNA analysis - a review of the READNA Project. New Biotechnology. PMID 26514324 DOI: 10.1016/J.Nbt.2015.10.003 |
0.079 |
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| 2011 |
Uphoff S, Gryte K, Evans G, Kapanidis AN. Cover Picture: Improved Temporal Resolution and Linked Hidden Markov Modeling for Switchable Single‐Molecule FRET (ChemPhysChem 3/2011) Chemphyschem. 12: 421-421. DOI: 10.1002/CPHC.201190011 |
0.065 |
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| 2018 |
Kapanidis AN, Stracy M. Tracking tRNA packages. Nature Chemical Biology. 14: 528-529. PMID 29769738 DOI: 10.1038/s41589-018-0066-8 |
0.065 |
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| 2019 |
Pambos OJ, Kapanidis AN. Tracking antibiotic mechanisms. Nature Reviews. Microbiology. 17: 201. PMID 30804491 DOI: 10.1038/s41579-019-0167-8 |
0.063 |
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| 2012 |
Kapanidis AN, Crawford R. Colorful molecular diagnostics. Clinical Chemistry. 58: 659-60. PMID 22300628 DOI: 10.1373/clinchem.2011.180802 |
0.052 |
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| 2011 |
Holden SJ, Uphoff S, Kapanidis AN. DAOSTORM: An algorithm for high-density super-resolution microscopy Nature Methods. 8: 279-280. PMID 21451515 DOI: 10.1038/nmeth0411-279 |
0.018 |
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| Hide low-probability matches. |